Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 5.5e-101 370.9 184 100.0
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 4.7e-68 261.5 201 71.1
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 4.7e-68 261.5 200 71.5
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 5.2e-67 258.1 200 69.5
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 6.8e-67 257.7 200 69.0
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 3.4e-66 255.4 164 83.5
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 5.8e-66 254.6 200 69.0
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 7.6e-66 254.2 200 68.0
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 9.9e-66 253.8 197 69.5
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 1.2e-63 246.9 199 68.8
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 6.0e-63 244.6 199 68.3
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 6.0e-63 244.6 199 68.3
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 1.6e-60 236.5 201 67.2
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 1.6e-60 236.5 192 67.7
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 1.1e-59 233.8 201 66.7
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 2.3e-54 216.1 204 60.3
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 6.6e-54 214.5 192 61.5
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.5e-53 213.4 192 61.5
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 1.5e-53 213.4 192 60.9
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 1.5e-53 213.4 192 62.0
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 1.5e-53 213.4 190 61.6
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 3.3e-53 212.2 192 61.5
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 3.3e-53 212.2 192 60.9
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 5.6e-53 211.5 200 60.0
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 5.6e-53 211.5 192 60.9
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 7.3e-53 211.1 190 62.6
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 7.3e-53 211.1 190 60.0
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 9.6e-53 210.7 192 60.4
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 1.6e-52 209.9 193 61.7
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 1.6e-52 209.9 192 60.4
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 1.6e-52 209.9 192 60.9
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 2.1e-52 209.5 192 60.9
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 3.6e-52 208.8 192 60.4
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 3.6e-52 208.8 192 60.9
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 4.8e-52 208.4 192 60.4
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 6.2e-52 208.0 193 60.1
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 8.1e-52 207.6 196 60.7
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 1.1e-51 207.2 190 61.6
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 1.4e-51 206.8 193 60.1
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.4e-51 206.8 193 60.1
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.8e-51 206.5 193 60.6
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 1.8e-51 206.5 197 57.4
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 2.4e-51 206.1 192 60.4
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 2.4e-51 206.1 192 60.4
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 3.1e-51 205.7 190 60.5
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 3.1e-51 205.7 190 60.5
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 4.0e-51 205.3 192 58.9
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 4.0e-51 205.3 189 59.8
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 4.0e-51 205.3 196 58.7
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 9.0e-51 204.1 192 59.9
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 9.0e-51 204.1 190 59.5
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 1.5e-50 203.4 192 58.3
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 1.5e-50 203.4 190 60.0
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 2.0e-50 203.0 163 66.3
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 2.0e-50 203.0 192 59.9
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 2.0e-50 203.0 193 57.5
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 2.0e-50 203.0 190 58.4
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 2.6e-50 202.6 198 58.6
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 2.6e-50 202.6 198 58.6
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.4e-50 202.2 190 60.5
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.4e-50 202.2 192 59.9
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 4.5e-50 201.8 190 60.5
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 4.5e-50 201.8 198 57.6
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 4.5e-50 201.8 198 57.6
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 5.8e-50 201.4 190 58.9
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 7.6e-50 201.1 192 59.4
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 7.6e-50 201.1 192 57.8
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 9.9e-50 200.7 192 58.9
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 9.9e-50 200.7 192 58.3
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 1.3e-49 200.3 201 57.7
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.7e-49 199.9 189 59.8
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.7e-49 199.9 189 59.8
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 1.7e-49 199.9 192 58.9
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 1.7e-49 199.9 192 59.4
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 2.9e-49 199.1 196 58.7
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 3.8e-49 198.7 192 57.8
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 3.8e-49 198.7 192 57.8
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 4.9e-49 198.4 190 57.9
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 4.9e-49 198.4 190 58.9
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 4.9e-49 198.4 185 58.9
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 8.4e-49 197.6 189 59.3
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 8.4e-49 197.6 191 59.2
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 1.9e-48 196.4 189 58.7
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 2.4e-48 196.1 193 58.5
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 2.4e-48 196.1 198 57.6
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 4.2e-48 195.3 192 57.3
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 5.4e-48 194.9 190 57.4
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 7.1e-48 194.5 192 57.3
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 7.1e-48 194.5 192 56.8
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 7.1e-48 194.5 191 57.6
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 9.3e-48 194.1 193 58.0
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.2e-47 193.7 219 53.9
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.2e-47 193.7 192 56.8
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.1e-47 193.0 192 56.2
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 2.1e-47 193.0 192 56.2
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 2.7e-47 192.6 199 56.8
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 3.5e-47 192.2 191 57.6
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 3.5e-47 192.2 192 58.3
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 4.6e-47 191.8 192 57.3
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 6.0e-47 191.4 219 53.4
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 7.9e-47 191.0 192 58.9
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.8e-46 189.9 188 55.9
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 1.8e-46 189.9 189 56.1
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 3.0e-46 189.1 188 56.4
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 3.9e-46 188.7 190 55.3
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 3.9e-46 188.7 188 55.9
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 3.9e-46 188.7 188 56.4
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 5.1e-46 188.3 192 56.8
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 8.7e-46 187.6 191 56.5
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 1.1e-45 187.2 203 54.7
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 2.5e-45 186.0 193 54.9
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 9.6e-45 184.1 156 65.4
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 9.6e-45 184.1 193 53.4
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 2.8e-44 182.6 193 53.9
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 8.1e-44 181.0 180 59.4
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 4.5e-42 175.3 233 46.4
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 7.6e-42 174.5 179 55.3
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 7.6e-42 174.5 175 58.9
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 7.6e-42 174.5 190 51.1
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.3e-41 173.7 174 56.9
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 2.2e-41 172.9 177 57.1
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 2.9e-41 172.6 178 55.6
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 6.5e-41 171.4 177 55.9
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 3.9e-38 162.2 163 57.7
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 5.1e-38 161.8 184 54.3
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 1.5e-37 160.2 157 58.6
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 2.0e-34 149.8 175 50.3
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 7.6e-34 147.9 183 47.0
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 7.6e-34 147.9 183 47.0
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 5.5e-32 141.7 177 46.3
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 7.2e-32 141.4 195 47.2
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 1.1e-29 134.0 157 51.0
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 1.1e-29 134.0 157 51.0
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.5e-29 132.9 184 42.9
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 5.9e-26 121.7 146 49.3
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.3e-25 120.6 181 42.0
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.7e-20 103.6 148 41.9
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 1.7e-20 103.6 129 51.2
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 2.8e-20 102.8 107 54.2
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 1.2e-18 97.4 105 52.4
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 1.3e-17 94.0 67 70.1
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 1.7e-17 93.6 57 78.9
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 8.5e-17 91.3 57 77.2
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 4.2e-16 89.0 47 93.6
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 9.4e-16 87.8 69 62.3
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 2.3e-14 83.2 68 64.7
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 5.3e-11 72.0 84 48.8
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 4.5e-10 68.9 62 59.7
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 5.9e-10 68.6 62 54.8
C09p34920 Brassica napus HOM05D001108 ORTHO05D005418 1.0e-09 67.8 53 67.9
BolC9t56339H Brassica oleracea HOM05D001108 ORTHO05D005418 1.0e-09 67.8 53 67.9
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 1.3e-09 67.4 156 33.3
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 2.2e-09 66.6 103 36.9
C09p34930 Brassica napus HOM05D001108 ORTHO05D005418 3.8e-09 65.9 49 71.4
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.1e-08 64.3 156 30.1
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 4.2e-08 62.4 154 31.2
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 7.2e-08 61.6 46 67.4
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 8.0e-07 58.2 110 33.6


User provided reference genes

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