Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p15250 Brassica napus HOM05D007918 ORTHO05D010025 4.4e-65 251.1 125 100.0
BcaC04g22795 Brassica carinata HOM05D007918 ORTHO05D010025 8.2e-64 246.9 125 96.8
BolC9t54431H Brassica oleracea HOM05D007918 ORTHO05D010025 8.2e-64 246.9 125 96.8
A09p12860 Brassica napus HOM05D007918 ORTHO05D010025 2.2e-61 238.8 124 94.4
BcaB07g31591 Brassica carinata HOM05D007918 ORTHO05D010025 3.8e-61 238.0 124 92.7
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 1.1e-60 236.5 124 94.4
Sp3g33610 Schrenkiella parvula HOM05D007918 ORTHO05D010025 5.7e-57 224.2 124 87.1
CARHR110890 Cardamine hirsuta HOM05D007918 ORTHO05D010025 9.1e-55 216.9 124 83.1
BcaB08g34905 Brassica carinata HOM05D007918 ORTHO05D010025 1.2e-54 216.5 124 82.3
A09p58930 Brassica napus HOM05D007918 ORTHO05D010025 5.0e-53 211.1 121 84.3
BraA09t41278Z Brassica rapa HOM05D007918 ORTHO05D010025 5.0e-53 211.1 121 84.3
BcaC07g41218 Brassica carinata HOM05D007918 ORTHO05D010025 3.2e-52 208.4 121 83.5
BolC8t51784H Brassica oleracea HOM05D007918 ORTHO05D010025 3.2e-52 208.4 121 83.5
Thhalv10002121m.g Eutrema salsugineum HOM05D007918 ORTHO05D010025 2.7e-51 205.3 125 80.8
C08p42250 Brassica napus HOM05D007918 ORTHO05D010025 1.4e-50 203.0 121 81.0
AT2G20362 Arabidopsis thaliana HOM05D007918 ORTHO05D010025 7.5e-49 197.2 125 80.0
Carub.0003s3475 Capsella rubella HOM05D007918 ORTHO05D010025 1.3e-48 196.4 125 77.6
AL3G53330 Arabidopsis lyrata HOM05D007918 ORTHO05D010025 1.7e-48 196.1 124 79.8
THA.LOC104814533 Tarenaya hassleriana HOM05D007918 ORTHO05D010025 2.6e-33 145.6 126 61.9
BcaB03g16829 Brassica carinata HOM05D007918 ORTHO05D010025 5.6e-28 127.9 96 71.9
VMungo1383G2778 Vigna mungo HOM05D007918 ORTHO05D010025 1.9e-12 76.3 103 42.7
CiPaw.03G271500 Carya illinoinensis HOM05D007918 ORTHO05D010025 5.6e-12 74.7 82 46.3
COL.COLO4_02903 Corchorus olitorius HOM05D007918 ORTHO05D010025 1.2e-11 73.6 108 40.7
Glyma.03G167700 Glycine max HOM05D007918 ORTHO05D010025 2.8e-11 72.4 104 44.2
Lj1g0000049 Lotus japonicus HOM05D007918 ORTHO05D010025 3.6e-11 72.0 97 43.3
Rhsim01G0260000 Rhododendron simsii HOM05D007918 ORTHO05D010025 6.2e-11 71.2 109 41.3
QL09p041632 Quercus lobata HOM05D007918 ORTHO05D010025 3.1e-10 68.9 103 43.7
TPR.G20079 Trifolium pratense HOM05D007918 ORTHO05D010025 3.1e-10 68.9 98 42.9
TPR.G29178 Trifolium pratense HOM05D007918 ORTHO05D010025 3.1e-10 68.9 96 40.6
Glyma.19G168900 Glycine max HOM05D007918 ORTHO05D010025 4.0e-10 68.6 104 41.3
Thecc.01G249400 Theobroma cacao HOM05D007918 ORTHO05D010025 4.0e-10 68.6 113 37.2
Cpa.g.sc87.38 Carica papaya HOM05D007918 ORTHO05D010025 5.2e-10 68.2 106 38.7
Sabra02G0194600 Salix brachista HOM05D007918 ORTHO05D010025 5.2e-10 68.2 94 39.4
Atru.chr5.1868 Acer truncatum HOM05D007918 ORTHO05D010025 8.9e-10 67.4 73 43.8
TAR362G0051 Trochodendron aralioides HOM05D007918 ORTHO05D010025 8.9e-10 67.4 103 38.8
Duzib211G0621 Durio zibethinus HOM05D007918 ORTHO05D010025 1.5e-09 66.6 119 37.8
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 2.0e-09 66.2 103 40.8
Potri.002G256100 Populus trichocarpa HOM05D007918 ORTHO05D010025 2.6e-09 65.9 112 37.5
Migut.D00482 Erythranthe guttata HOM05D007918 ORTHO05D010025 4.4e-09 65.1 70 44.3
Phvul.001G165400 Phaseolus vulgaris HOM05D007918 ORTHO05D010025 4.4e-09 65.1 107 38.3
PGSC0003DMG400008578 Solanum tuberosum HOM05D007918 ORTHO05D010025 4.4e-09 65.1 70 47.1
Prupe.8G214800 Prunus persica HOM05D007918 ORTHO05D010025 5.8e-09 64.7 75 46.7
FvH4_2g20371 Fragaria vesca HOM05D007918 ORTHO05D010025 7.5e-09 64.3 78 44.9
FAN24G2847 Fragaria x ananassa HOM05D007918 ORTHO05D010025 7.5e-09 64.3 78 44.9
Medtr7g098680 Medicago truncatula HOM05D007918 ORTHO05D010025 7.5e-09 64.3 108 38.0
Manes.13G039200 Manihot esculenta HOM05D007918 ORTHO05D010025 9.9e-09 63.9 69 44.9
MD05G1187800 Malus domestica HOM05D007918 ORTHO05D010025 1.3e-08 63.5 77 42.9
Sopen09g025600 Solanum pennellii HOM05D000691 ORTHO05D000378 1.3e-08 63.5 70 45.7
FAN15G1752 Fragaria x ananassa HOM05D007918 ORTHO05D010025 1.7e-08 63.2 79 43.0
Oeu015438.1 Olea europaea HOM05D007918 ORTHO05D010025 1.7e-08 63.2 95 41.1
Gohir.A07G203900 Gossypium hirsutum HOM05D007918 ORTHO05D010025 2.2e-08 62.8 74 40.5
Gohir.D07G209900 Gossypium hirsutum HOM05D007918 ORTHO05D010025 2.2e-08 62.8 74 40.5
Gorai.001G237300 Gossypium raimondii HOM05D007918 ORTHO05D010025 2.2e-08 62.8 74 40.5
FAN27G3434 Fragaria x ananassa HOM05D007918 ORTHO05D010025 2.9e-08 62.4 80 43.8
Solyc09g064460.1 Solanum lycopersicum HOM05D007918 ORTHO05D010025 2.9e-08 62.4 70 45.7
SalBow4G0315 Salvia bowleyana HOM05D007918 ORTHO05D010025 8.3e-08 60.8 69 43.5
Hma1.2p1_2127F.1_g314650 Hydrangea macrophylla HOM05D007918 ORTHO05D010025 1.1e-07 60.5 67 43.3
Aqoxy5G00124 Aquilegia oxysepala HOM05D007918 ORTHO05D010025 1.4e-07 60.1 99 36.4
TWI12G1379 Tripterygium wilfordii HOM05D007918 ORTHO05D010025 1.4e-07 60.1 66 42.4
Ciclev10024004m.g Citrus clementina HOM05D007918 ORTHO05D010025 1.9e-07 59.7 60 50.0
Lalb_Chr25g0289821 Lupinus albus HOM05D007918 ORTHO05D010025 1.9e-07 59.7 121 38.8
Nn1g03000 Nelumbo nucifera HOM05D007918 ORTHO05D010025 2.4e-07 59.3 111 32.4
Sc05g0002860 Simmondsia chinensis HOM05D007918 ORTHO05D010025 2.4e-07 59.3 83 36.1
Gorai.001G182300 Gossypium raimondii HOM05D007918 ORTHO05D010025 4.1e-07 58.5 93 37.6
Gohir.A07G153050 Gossypium hirsutum HOM05D007918 ORTHO05D010025 5.4e-07 58.2 122 36.9
Eucgr.K01423 Eucalyptus grandis HOM05D007918 ORTHO05D010025 7.1e-07 57.8 105 38.1
Lsat_1_v5_gn_0_19161 Lactuca sativa HOM05D007918 ORTHO05D010025 7.1e-07 57.8 96 36.5
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 7.1e-07 57.8 90 38.9
DCAR_000468 Daucus carota HOM05D000121 ORTHO05D000102 9.2e-07 57.4 74 41.9
Gohir.D07G159200 Gossypium hirsutum HOM05D007918 ORTHO05D010025 9.2e-07 57.4 117 38.5
Lsat_1_v5_gn_8_91021 Lactuca sativa HOM05D007918 ORTHO05D010025 9.2e-07 57.4 102 34.3
Actinidia23702 Actinidia chinensis HOM05D007918 ORTHO05D010025 1.6e-06 56.6 66 45.5
HanXRQChr04g0107631 Helianthus annuus HOM05D007918 ORTHO05D010025 2.7e-06 55.8 69 42.0
CsaV3_6G007330 Cucumis sativus L. HOM05D007918 ORTHO05D010025 7.8e-06 54.3 105 33.3
MBI07_g21057_MAGBIO Magnolia biondii HOM05D007918 ORTHO05D010025 7.8e-06 54.3 60 48.3


User provided reference genes

Program Settings