Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 1.8e-86 322.8 188 100.0
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 1.8e-78 296.2 192 94.3
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 1.8e-78 296.2 192 94.3
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 4.0e-78 295.0 190 90.5
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 4.1e-75 285.0 188 90.4
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 3.7e-68 261.9 173 83.2
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 5.4e-67 258.1 190 76.3
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 1.6e-66 256.5 167 79.0
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 1.6e-66 256.5 167 79.0
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 3.5e-66 255.4 167 79.0
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 2.9e-65 252.3 167 77.2
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 6.5e-65 251.1 167 77.8
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 6.5e-65 251.1 167 77.8
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.0e-62 243.8 188 74.5
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 1.8e-62 243.0 167 76.0
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 2.0e-58 229.6 166 75.9
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 7.3e-56 221.1 188 74.5
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 2.8e-55 219.2 188 75.0
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 8.3e-52 207.6 165 77.0
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 1.5e-48 196.8 205 60.5
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 5.2e-46 188.3 182 64.8
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.6e-42 176.8 189 59.3
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 2.0e-42 176.4 194 56.7
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 1.3e-41 173.7 203 53.7
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 1.7e-41 173.3 203 53.7
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 3.0e-41 172.6 209 52.6
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 3.9e-41 172.2 203 53.2
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 6.6e-41 171.4 203 53.2
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 1.5e-37 160.2 182 53.8
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 1.5e-37 160.2 182 53.8
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 5.8e-37 158.3 175 58.9
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 7.5e-37 157.9 182 53.3
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 9.9e-37 157.5 182 53.3
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.6e-34 150.2 203 51.7
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 2.7e-34 149.4 192 51.6
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 1.0e-33 147.5 116 71.6
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 1.5e-32 143.7 190 52.1
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 3.3e-32 142.5 191 50.8
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 4.3e-32 142.1 169 52.1
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 1.2e-31 140.6 186 51.6
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 8.9e-30 134.4 119 68.1
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 2.9e-28 129.4 200 46.5
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 1.9e-27 126.7 212 44.3
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 4.1e-27 125.6 215 43.3
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 3.5e-26 122.5 209 45.0
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 3.5e-26 122.5 212 41.0
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 4.6e-26 122.1 209 43.5
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 2.3e-25 119.8 186 48.9
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 3.9e-25 119.0 192 44.3
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.9e-24 116.7 166 43.4
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 2.5e-24 116.3 213 41.8
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 5.6e-24 115.2 185 44.3
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 1.2e-23 114.0 197 43.1
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 4.7e-23 112.1 171 44.4
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 6.2e-23 111.7 210 40.0
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 6.2e-23 111.7 210 40.0
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 1.1e-22 110.9 168 44.0
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.1e-22 109.4 202 42.1
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.2e-21 107.5 160 46.2
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 7.6e-21 104.8 98 58.2
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 7.6e-21 104.8 160 45.6
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 6.4e-20 101.7 169 42.0
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 6.4e-20 101.7 211 40.8
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 6.4e-20 101.7 164 43.9
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 1.1e-19 100.9 139 48.2
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 1.4e-19 100.5 169 42.0
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 1.4e-19 100.5 215 43.7
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 3.2e-19 99.4 168 41.7
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 4.2e-19 99.0 164 38.4
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 5.4e-19 98.6 173 43.4
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 7.1e-19 98.2 180 40.6
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 9.3e-19 97.8 180 36.7
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 9.3e-19 97.8 161 42.9
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 9.3e-19 97.8 154 40.3
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 1.6e-18 97.1 167 40.1
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 1.6e-18 97.1 190 35.8
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 2.1e-18 96.7 183 45.9
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 2.1e-18 96.7 184 38.0
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 2.7e-18 96.3 187 43.3
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 2.7e-18 96.3 207 37.7
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 3.5e-18 95.9 72 70.8
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 6.0e-18 95.1 170 39.4
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 7.8e-18 94.7 206 37.9
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 1.3e-17 94.0 161 42.2
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 1.7e-17 93.6 175 42.3
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 3.0e-17 92.8 161 41.6
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 3.0e-17 92.8 176 42.6
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 3.9e-17 92.4 167 40.1
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 6.6e-17 91.7 163 44.8
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 8.7e-17 91.3 170 48.8
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 8.7e-17 91.3 120 45.8
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 1.1e-16 90.9 165 37.0
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 1.1e-16 90.9 169 42.6
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.9e-16 90.1 165 43.6
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.9e-16 90.1 171 46.8
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 3.3e-16 89.4 171 46.8
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 3.3e-16 89.4 162 43.8
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.3e-16 89.0 170 47.6
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 5.6e-16 88.6 170 37.6
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 5.6e-16 88.6 181 43.6
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 9.6e-16 87.8 159 41.5
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 9.6e-16 87.8 205 41.0
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 1.6e-15 87.0 146 43.8
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.1e-15 86.7 205 36.6
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 2.8e-15 86.3 163 41.1
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 2.8e-15 86.3 162 39.5
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 6.2e-15 85.1 162 42.0
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 6.2e-15 85.1 130 43.1
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 6.2e-15 85.1 136 43.4
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 8.1e-15 84.7 70 77.1
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 1.4e-14 84.0 149 44.3
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 1.4e-14 84.0 178 39.3
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 1.8e-14 83.6 164 40.2
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.4e-14 83.2 168 42.3
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.4e-14 83.2 168 42.3
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 5.3e-14 82.0 150 42.7
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 5.3e-14 82.0 166 36.7
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 5.3e-14 82.0 168 36.9
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 6.9e-14 81.6 170 37.6
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 9.0e-14 81.3 134 34.3
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 9.0e-14 81.3 168 41.7
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 1.2e-13 80.9 137 43.8
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.5e-13 80.5 172 37.2
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.6e-13 79.7 181 40.3
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 2.6e-13 79.7 179 41.3
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.6e-13 79.7 183 36.6
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 5.8e-13 78.6 163 38.7
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.3e-12 77.4 201 37.3
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 1.7e-12 77.0 154 36.4
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.2e-12 76.6 201 36.3
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 4.9e-12 75.5 157 38.2
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 4.9e-12 75.5 156 40.4
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 8.4e-12 74.7 153 39.2
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 1.4e-11 73.9 153 38.6
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 2.4e-11 73.2 157 38.2
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.4e-11 73.2 163 40.5
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 1.6e-10 70.5 140 45.0
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 1.6e-10 70.5 185 35.7
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 1.6e-10 70.5 209 36.4
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 2.1e-10 70.1 142 44.4
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 2.1e-10 70.1 155 38.7
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 2.7e-10 69.7 153 37.9
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 6.0e-10 68.6 135 41.5
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 6.0e-10 68.6 120 40.0
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 7.9e-10 68.2 150 36.0
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 7.9e-10 68.2 126 40.5
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 1.3e-09 67.4 154 38.3
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 1.8e-09 67.0 164 37.2
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 2.3e-09 66.6 168 39.3
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 3.0e-09 66.2 164 32.9
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 8.7e-09 64.7 156 38.5
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 1.5e-08 63.9 152 32.2
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 1.5e-08 63.9 181 37.6
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 5.6e-08 62.0 78 55.1
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 9.6e-08 61.2 165 32.7
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 1.3e-07 60.8 121 38.0
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 2.8e-07 59.7 97 41.2
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 3.7e-07 59.3 169 38.5
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 3.7e-07 59.3 134 35.8
Os05g0559316 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 6.2e-07 58.5 102 41.2
Zm00001eb343410 Zea mays HOM05D003644 ORTHO05D004305 1.4e-06 57.4 100 38.0
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 6.9e-06 55.1 67 47.8


User provided reference genes

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