Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p14930 Brassica napus HOM05D000192 ORTHO05D006528 6.2e-97 357.5 179 100.0
A07p41810 Brassica napus HOM05D000192 ORTHO05D006528 1.6e-65 253.1 164 84.8
BraA07t31711Z Brassica rapa HOM05D000192 ORTHO05D006528 1.6e-65 253.1 164 84.8
BcaC08g47275 Brassica carinata HOM05D000192 ORTHO05D006528 2.1e-65 252.7 164 84.1
C06p50200 Brassica napus HOM05D000192 ORTHO05D006528 2.1e-65 252.7 164 84.1
BolC6t40060H Brassica oleracea HOM05D000192 ORTHO05D006528 2.1e-65 252.7 164 84.1
BcaC08g47122 Brassica carinata HOM05D000192 ORTHO05D006528 3.4e-63 245.4 164 80.5
BcaC04g22821 Brassica carinata HOM05D000192 ORTHO05D006528 3.0e-59 232.3 166 76.5
Sp5g31380 Schrenkiella parvula HOM05D000192 ORTHO05D006528 2.5e-58 229.2 166 72.9
Thhalv10019441m.g Eutrema salsugineum HOM05D000192 ORTHO05D006528 3.3e-58 228.8 166 71.1
AL2G36320 Arabidopsis lyrata HOM05D000192 ORTHO05D006528 8.2e-57 224.2 166 71.1
Carub.0002s2313 Capsella rubella HOM05D000192 ORTHO05D006528 1.8e-56 223.0 166 70.5
AT1G76240 Arabidopsis thaliana HOM05D000192 ORTHO05D006528 4.0e-56 221.9 166 70.5
BcaB05g24976 Brassica carinata HOM05D000192 ORTHO05D006528 2.5e-53 212.6 160 70.6
Aa31LG4G6330 Aethionema arabicum HOM05D000192 ORTHO05D006528 1.6e-52 209.9 169 65.7
CARHR069800 Cardamine hirsuta HOM05D000192 ORTHO05D006528 1.6e-52 209.9 166 66.9
THA.LOC104813758 Tarenaya hassleriana HOM05D000192 ORTHO05D006528 2.2e-49 199.5 166 66.3
THA.LOC104809754 Tarenaya hassleriana HOM05D000192 ORTHO05D006528 1.6e-44 183.3 173 60.1
A07p08880 Brassica napus HOM05D000192 ORTHO05D006528 2.9e-38 162.5 113 81.4
Cpa.g.sc26.210 Carica papaya HOM05D000192 ORTHO05D006528 3.8e-30 135.6 172 47.1
Ciclev10003381m.g Citrus clementina HOM05D000192 ORTHO05D006528 1.1e-29 134.0 127 52.8
Gohir.A01G106900 Gossypium hirsutum HOM05D000192 ORTHO05D006528 1.5e-29 133.7 165 47.9
CiPaw.07G139700 Carya illinoinensis HOM05D000192 ORTHO05D006528 4.2e-29 132.1 165 47.3
Potri.005G249500 Populus trichocarpa HOM05D000192 ORTHO05D006528 9.4e-29 131.0 166 45.8
Gorai.002G118700 Gossypium raimondii HOM05D000192 ORTHO05D006528 1.2e-28 130.6 165 46.7
Gohir.D01G093300 Gossypium hirsutum HOM05D000192 ORTHO05D006528 2.7e-28 129.4 165 46.7
Sabra02G0009200 Salix brachista HOM05D000192 ORTHO05D006528 4.7e-28 128.6 127 48.8
Manes.05G135200 Manihot esculenta HOM05D000192 ORTHO05D006528 6.1e-28 128.3 145 47.6
Thecc.08G057400 Theobroma cacao HOM05D000192 ORTHO05D006528 6.1e-28 128.3 163 47.2
Potri.002G011600 Populus trichocarpa HOM05D000192 ORTHO05D006528 1.4e-27 127.1 127 49.6
Sabra05G0193000 Salix brachista HOM05D000192 ORTHO05D006528 1.4e-27 127.1 165 45.5
COL.COLO4_03996 Corchorus olitorius HOM05D000192 ORTHO05D006528 2.3e-27 126.3 164 45.1
Gorai.009G188400 Gossypium raimondii HOM05D000192 ORTHO05D006528 2.3e-27 126.3 166 45.8
QL02p013914 Quercus lobata HOM05D000192 ORTHO05D006528 3.0e-27 125.9 155 47.1
Gohir.A05G180100 Gossypium hirsutum HOM05D000192 ORTHO05D006528 3.9e-27 125.6 166 45.8
Manes.18G006100 Manihot esculenta HOM05D000192 ORTHO05D006528 3.9e-27 125.6 163 42.3
Dinv31930 Davidia involucrata HOM05D000192 ORTHO05D006528 6.7e-27 124.8 138 49.3
Atru.chr13.154 Acer truncatum HOM05D000192 ORTHO05D006528 1.1e-26 124.0 160 42.5
ClCG11G018620 Citrullus lanatus HOM05D000192 ORTHO05D006528 1.5e-26 123.6 154 46.8
Sabra02G0009100 Salix brachista HOM05D000192 ORTHO05D006528 1.5e-26 123.6 127 47.2
Nitab4.5_0002710g0070 Nicotiana tabacum HOM05D000192 ORTHO05D006528 2.6e-26 122.9 165 45.5
MELO3C017013.2 Cucumis melo HOM05D000192 ORTHO05D006528 3.3e-26 122.5 161 46.6
Duzib093G0457 Durio zibethinus HOM05D000192 ORTHO05D006528 5.7e-26 121.7 163 42.9
TWI56G1025 Tripterygium wilfordii HOM05D000192 ORTHO05D006528 7.4e-26 121.3 175 40.6
Haze_22755 Corylus avellana HOM05D000192 ORTHO05D006528 9.7e-26 120.9 158 46.8
Gohir.D05G183100 Gossypium hirsutum HOM05D000192 ORTHO05D006528 1.7e-25 120.2 166 44.6
THA.LOC104807040 Tarenaya hassleriana HOM05D000192 ORTHO05D006528 1.7e-25 120.2 144 47.9
CANSAT25G1315 Cannabis sativa HOM05D000192 ORTHO05D006528 2.2e-25 119.8 142 48.6
CsaV3_4G037150 Cucumis sativus L. HOM05D000192 ORTHO05D006528 2.2e-25 119.8 158 45.6
Duzib041G0263 Durio zibethinus HOM05D000192 ORTHO05D006528 4.8e-25 118.6 163 44.2
Nitab4.5_0000337g0210 Nicotiana tabacum HOM05D000192 ORTHO05D006528 6.3e-25 118.2 143 47.6
Nn5g30919 Nelumbo nucifera HOM05D000192 ORTHO05D006528 1.8e-24 116.7 164 42.7
TAR628G1559 Trochodendron aralioides HOM05D000192 ORTHO05D006528 1.8e-24 116.7 164 43.3
VMungo1309G1647 Vigna mungo HOM05D000192 ORTHO05D006528 1.8e-24 116.7 166 40.4
PSO541G6369 Papaver somniferum HOM05D000192 ORTHO05D006528 7.0e-24 114.8 129 45.0
Phvul.009G021700 Phaseolus vulgaris HOM05D000192 ORTHO05D006528 7.0e-24 114.8 166 39.8
arahy.Tifrunner.gnm1.ann1.D59EVQ Arachis hypogaea HOM05D000192 ORTHO05D006528 9.1e-24 114.4 173 41.6
PSO675G4094 Papaver somniferum HOM05D000192 ORTHO05D006528 1.6e-23 113.6 129 45.0
RcHm_v2.0_Chr6g0304151 Rosa chinensis HOM05D000192 ORTHO05D006528 2.6e-23 112.8 167 40.1
FAN15G0671 Fragaria x ananassa HOM05D000192 ORTHO05D006528 5.9e-23 111.7 165 38.2
Sed0010871 Sechium edule HOM05D000192 ORTHO05D006528 5.9e-23 111.7 129 45.7
MBI08_g42655_MAGBIO Magnolia biondii HOM05D000192 ORTHO05D006528 7.7e-23 111.3 129 44.2
Rhsim07G0254400 Rhododendron simsii HOM05D000192 ORTHO05D006528 7.7e-23 111.3 119 47.1
FvH4_2g37580 Fragaria vesca HOM05D000192 ORTHO05D006528 1.0e-22 110.9 165 38.2
FAN27G2646 Fragaria x ananassa HOM05D000192 ORTHO05D006528 1.3e-22 110.5 165 38.2
Glyma.04G018800 Glycine max HOM05D000192 ORTHO05D006528 1.7e-22 110.2 166 37.3
Glyma.06G019100 Glycine max HOM05D000192 ORTHO05D006528 1.7e-22 110.2 166 36.7
Lj1g0016081 Lotus japonicus HOM05D000192 ORTHO05D006528 2.2e-22 109.8 177 36.7
Rhsim07G0254500 Rhododendron simsii HOM05D000192 ORTHO05D006528 2.2e-22 109.8 167 42.5
vmacro04400 Vaccinium macrocarpon HOM05D000192 ORTHO05D006528 2.2e-22 109.8 149 45.0
PGR083G2156 Punica granatum HOM05D000192 ORTHO05D006528 2.9e-22 109.4 137 44.5
Peaxi162Scf00400g00022 Petunia axillaris HOM05D000192 ORTHO05D006528 3.8e-22 109.0 163 40.5
Aqoxy6G01755 Aquilegia oxysepala HOM05D000192 ORTHO05D006528 6.5e-22 108.2 174 37.4
DCAR_009526 Daucus carota HOM05D000192 ORTHO05D006528 1.9e-21 106.7 164 40.2
TAR376G0017 Trochodendron aralioides HOM05D000192 ORTHO05D006528 1.9e-21 106.7 155 42.6
CAN.G311.110 Capsicum annuum HOM05D000192 ORTHO05D006528 5.5e-21 105.1 165 41.8
Migut.C00951 Erythranthe guttata HOM05D000192 ORTHO05D006528 5.5e-21 105.1 158 42.4
Eucgr.F01753 Eucalyptus grandis HOM05D000192 ORTHO05D006528 7.2e-21 104.8 118 47.5
Psat5g011840 Pisum sativum HOM05D000192 ORTHO05D006528 1.2e-20 104.0 129 41.9
Rhsim07G0254600 Rhododendron simsii HOM05D000192 ORTHO05D006528 1.6e-20 103.6 168 39.9
SalBow7G2283 Salvia bowleyana HOM05D000192 ORTHO05D006528 2.1e-20 103.2 127 43.3
Sed0005663 Sechium edule HOM05D000192 ORTHO05D006528 2.1e-20 103.2 126 41.3
Actinidia29784 Actinidia chinensis HOM05D000192 ORTHO05D006528 2.7e-20 102.8 126 46.0
Oeu004529.1 Olea europaea HOM05D000192 ORTHO05D006528 2.7e-20 102.8 163 38.0
Medtr3g115150 Medicago truncatula HOM05D000192 ORTHO05D006528 3.6e-20 102.4 168 37.5
PGSC0003DMG400009973 Solanum tuberosum HOM05D000192 ORTHO05D006528 3.6e-20 102.4 164 39.0
Lalb_Chr03g0033641 Lupinus albus HOM05D000192 ORTHO05D006528 4.7e-20 102.1 163 37.4
Solyc04g082270.3 Solanum lycopersicum HOM05D000192 ORTHO05D006528 6.1e-20 101.7 164 39.0
Sopen04g035890 Solanum pennellii HOM05D000192 ORTHO05D006528 6.1e-20 101.7 164 39.0
TPR.G38156 Trifolium pratense HOM05D000192 ORTHO05D006528 8.0e-20 101.3 178 36.0
EL10Ac1g01984 Beta vulgaris HOM05D000192 ORTHO05D006528 1.0e-19 100.9 134 42.5
CsaV3_6G031640 Cucumis sativus L. HOM05D000192 ORTHO05D006528 1.0e-19 100.9 162 37.0
GSVIVG01008683001 Vitis vinifera HOM05D000192 ORTHO05D006528 1.0e-19 100.9 112 48.2
ClCG08G009500 Citrullus lanatus HOM05D000192 ORTHO05D006528 1.8e-19 100.1 162 37.0
ClCG08G009560 Citrullus lanatus HOM05D000192 ORTHO05D006528 1.8e-19 100.1 162 37.0
MELO3C026545.2 Cucumis melo HOM05D000192 ORTHO05D006528 1.8e-19 100.1 162 36.4
Ah.00g000410 Amaranthus hybridus HOM05D000192 ORTHO05D006528 3.0e-19 99.4 131 38.2
PSO170G2613 Papaver somniferum HOM05D000192 ORTHO05D006528 3.0e-19 99.4 162 33.3
Cfa014060 Carpinus fangiana HOM05D000192 ORTHO05D006528 4.0e-19 99.0 158 44.3
Cc10_g00760 Coffea canephora HOM05D000192 ORTHO05D006528 4.0e-19 99.0 130 41.5
PSO210G4940 Papaver somniferum HOM05D000192 ORTHO05D006528 4.0e-19 99.0 126 37.3
MD08G1003400 Malus domestica HOM05D000192 ORTHO05D006528 6.8e-19 98.2 163 36.8
Ah.11g041040 Amaranthus hybridus HOM05D000192 ORTHO05D006528 1.2e-18 97.4 149 38.9
Prupe.1G355300 Prunus persica HOM05D000192 ORTHO05D006528 3.4e-18 95.9 196 33.7
unitig_747.g21520 Utricularia gibba HOM05D000192 ORTHO05D006528 4.4e-18 95.5 117 44.4
Nn6g31750 Nelumbo nucifera HOM05D000192 ORTHO05D006528 3.7e-17 92.4 126 36.5
AUR62036889 Chenopodium quinoa HOM05D000192 ORTHO05D006528 1.4e-16 90.5 180 35.0
Actinidia37969 Actinidia chinensis HOM05D000192 ORTHO05D006528 1.2e-15 87.4 118 47.5
Sc15g0004480 Simmondsia chinensis HOM05D000192 ORTHO05D006528 1.2e-15 87.4 115 42.6
Sed0016603 Sechium edule HOM05D000192 ORTHO05D006528 3.5e-15 85.9 126 38.9
unitig_26.g9892 Utricularia gibba HOM05D000192 ORTHO05D006528 1.3e-14 84.0 147 36.1
HPP92_003498 Vanilla planifolia HOM05D000192 ORTHO05D006528 1.3e-14 84.0 124 36.3
HPP92_026895 Vanilla planifolia HOM05D000192 ORTHO05D006528 1.3e-14 84.0 124 36.3
unitig_0.g2103 Utricularia gibba HOM05D000192 ORTHO05D006528 6.5e-14 81.6 157 36.9
Peaxi162Scf01481g00033 Petunia axillaris HOM05D000192 ORTHO05D006528 5.5e-13 78.6 111 38.7
CDE02G3917 Ceratophyllum demersum HOM05D000192 ORTHO05D006528 4.7e-12 75.5 139 32.4
CDE04G2625 Ceratophyllum demersum HOM05D000192 ORTHO05D006528 1.4e-11 73.9 103 35.0
A04p23780 Brassica napus HOM05D016870 ORTHO05D006528 1.8e-11 73.6 145 42.1
Lsat_1_v5_gn_9_44960 Lactuca sativa HOM05D000192 ORTHO05D006528 5.2e-11 72.0 96 39.6
SGA_v2.0_scaffold108G30845 Striga asiatica HOM05D000192 ORTHO05D006528 4.4e-10 68.9 109 35.8
ECA232G4383 Erigeron canadensis HOM05D000192 ORTHO05D006528 7.5e-10 68.2 135 32.6
Os10g0542700 Oryza sativa ssp. japonica HOM05D000192 ORTHO05D006528 1.7e-09 67.0 113 34.5
Psat2g150760 Pisum sativum HOM05D000192 ORTHO05D000123 5.4e-08 62.0 140 28.6
ATR0661G095 Amborella trichopoda HOM05D000192 ORTHO05D006528 7.0e-08 61.6 120 27.5
Medtr5g023520 Medicago truncatula HOM05D000192 ORTHO05D000123 9.1e-08 61.2 140 24.3
HanXRQChr05g0146821 Helianthus annuus HOM05D000192 ORTHO05D006528 1.2e-07 60.8 96 35.4
Psat2g150560 Pisum sativum HOM05D000192 ORTHO05D000123 2.0e-07 60.1 140 27.9
Medtr5g023550 Medicago truncatula HOM05D000192 ORTHO05D000123 3.5e-07 59.3 140 23.6
Cfa007047 Carpinus fangiana HOM05D000192 ORTHO05D000123 4.5e-07 58.9 139 29.5
Medtr5g023580 Medicago truncatula HOM05D000192 ORTHO05D000123 4.5e-07 58.9 140 24.3
Os06g0725700 Oryza sativa ssp. japonica HOM05D000192 ORTHO05D006528 7.7e-07 58.2 139 26.6
Medtr5g023340 Medicago truncatula HOM05D000192 ORTHO05D000123 1.3e-06 57.4 140 24.3
TPR.G25130 Trifolium pratense HOM05D000192 ORTHO05D000123 1.7e-06 57.0 140 24.3
Medtr5g023320 Medicago truncatula HOM05D000192 ORTHO05D000123 2.9e-06 56.2 141 22.0
Medtr5g023390 Medicago truncatula HOM05D000192 ORTHO05D000123 2.9e-06 56.2 140 24.3
Medtr5g023600 Medicago truncatula HOM05D000192 ORTHO05D000123 2.9e-06 56.2 140 24.3
Medtr5g023370 Medicago truncatula HOM05D000192 ORTHO05D000123 3.8e-06 55.8 140 27.1
Os10g0510200 Oryza sativa ssp. japonica HOM05D000192 ORTHO05D006528 3.8e-06 55.8 132 27.3
Medtr5g023350 Medicago truncatula HOM05D000192 ORTHO05D000123 5.0e-06 55.5 140 22.9
Psat2g150800 Pisum sativum HOM05D000192 ORTHO05D000123 5.0e-06 55.5 140 25.0


User provided reference genes

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