Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 1.3e-73 279.6 141 100.0
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 2.3e-70 268.9 142 96.5
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 6.0e-63 244.2 141 91.5
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 3.9e-62 241.5 143 88.8
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 8.7e-62 240.4 142 88.7
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 1.3e-60 236.5 143 88.1
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 6.9e-59 230.7 142 85.2
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 3.4e-58 228.4 142 83.8
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 3.8e-57 224.9 142 82.4
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 3.8e-57 224.9 142 82.4
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 3.8e-57 224.9 142 82.4
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 1.1e-56 223.4 142 81.7
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 2.4e-56 222.2 143 83.2
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 1.2e-55 219.9 143 82.5
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 3.5e-55 218.4 142 81.0
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 5.1e-54 214.5 142 79.6
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 5.1e-54 214.5 143 81.1
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 8.7e-54 213.8 132 82.6
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 1.1e-53 213.4 142 79.6
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 7.4e-53 210.7 140 80.7
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 3.6e-52 208.4 142 78.2
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 4.8e-52 208.0 142 75.4
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 1.2e-50 203.4 122 85.2
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 3.2e-48 195.3 142 75.4
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 1.5e-42 176.4 145 67.6
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 2.6e-42 175.6 144 66.7
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 6.0e-39 164.5 144 63.9
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 2.3e-38 162.5 144 64.6
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 6.7e-38 161.0 156 60.9
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 1.1e-37 160.2 150 60.0
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 1.9e-37 159.5 144 61.8
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 9.6e-37 157.1 131 67.2
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 9.6e-37 157.1 149 59.7
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 1.6e-36 156.4 149 62.4
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 4.8e-36 154.8 145 62.1
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 6.3e-36 154.5 149 59.1
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 1.1e-35 153.7 149 61.1
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 1.8e-35 152.9 144 62.5
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 3.1e-35 152.1 150 58.0
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 4.1e-35 151.8 151 58.3
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 6.9e-35 151.0 153 59.5
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 1.5e-34 149.8 148 60.8
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 2.0e-34 149.4 146 61.0
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 4.5e-34 148.3 148 57.4
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 5.9e-34 147.9 138 59.4
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 1.7e-33 146.4 149 57.7
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 2.9e-33 145.6 154 55.8
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 1.9e-32 142.9 147 60.5
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 1.9e-32 142.9 146 61.0
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 3.2e-32 142.1 133 61.7
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 5.5e-32 141.4 146 56.8
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 9.3e-32 140.6 146 57.5
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 9.3e-32 140.6 144 59.0
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 1.2e-31 140.2 149 56.4
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 2.1e-31 139.4 137 59.1
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 1.0e-30 137.1 156 55.8
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 1.8e-30 136.3 129 61.2
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 1.8e-30 136.3 149 57.0
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 2.3e-30 136.0 155 53.5
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 3.9e-30 135.2 127 60.6
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 8.7e-30 134.0 153 53.6
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 1.1e-29 133.7 145 51.7
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.5e-29 133.3 153 53.6
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 3.3e-29 132.1 141 56.0
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 4.3e-29 131.7 129 62.8
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 7.4e-29 131.0 148 57.4
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 9.7e-29 130.6 155 52.3
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 2.2e-28 129.4 153 52.3
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 2.8e-28 129.0 153 55.6
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 2.8e-28 129.0 165 50.3
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 3.7e-28 128.6 141 55.3
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 3.7e-28 128.6 156 52.6
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 8.2e-28 127.5 138 54.3
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 8.2e-28 127.5 125 56.8
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 8.2e-28 127.5 152 54.6
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.1e-27 127.1 144 54.9
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 1.8e-27 126.3 147 51.0
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 2.4e-27 125.9 132 57.6
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 4.1e-27 125.2 142 52.8
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 5.3e-27 124.8 166 51.8
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 1.2e-26 123.6 141 53.2
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.5e-26 123.2 143 54.5
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 1.5e-26 123.2 145 51.0
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 1.5e-26 123.2 125 57.6
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.0e-26 122.9 166 51.2
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.0e-26 122.9 166 51.2
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 2.0e-26 122.9 153 53.6
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 2.0e-26 122.9 163 48.5
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 3.4e-26 122.1 153 48.4
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 4.5e-26 121.7 122 56.6
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 4.5e-26 121.7 148 49.3
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 7.7e-26 120.9 193 44.0
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 1.0e-25 120.6 142 48.6
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 1.3e-25 120.2 127 55.9
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.7e-25 119.8 167 47.3
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 2.2e-25 119.4 133 52.6
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 2.2e-25 119.4 192 43.2
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 2.9e-25 119.0 123 53.7
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 5.0e-25 118.2 155 49.0
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 2.5e-24 115.9 153 49.0
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 9.4e-24 114.0 146 50.7
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 2.1e-23 112.8 152 47.4
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 2.7e-23 112.5 124 51.6
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 4.6e-23 111.7 129 49.6
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 6.1e-23 111.3 125 50.4
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 1.0e-22 110.5 143 48.3
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 1.0e-22 110.5 144 47.9
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 1.0e-22 110.5 141 46.1
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 2.3e-22 109.4 147 44.9
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 2.3e-22 109.4 139 48.9
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 3.0e-22 109.0 146 47.9
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 3.9e-22 108.6 139 50.4
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 5.1e-22 108.2 160 46.9
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 6.7e-22 107.8 142 48.6
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 6.7e-22 107.8 124 51.6
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 8.8e-22 107.5 134 50.0
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 1.5e-21 106.7 138 47.1
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 1.5e-21 106.7 171 44.4
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 2.0e-21 106.3 140 47.9
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 2.0e-21 106.3 153 47.1
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 3.3e-21 105.5 129 48.8
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 5.7e-21 104.8 145 47.6
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 7.4e-21 104.4 138 46.4
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 1.3e-20 103.6 158 43.7
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 1.7e-20 103.2 142 47.2
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 3.7e-20 102.1 132 46.2
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 3.7e-20 102.1 159 42.8
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 4.8e-20 101.7 144 43.8
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 1.8e-19 99.8 120 49.2
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 2.4e-19 99.4 144 45.1
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 3.1e-19 99.0 143 46.9
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 5.3e-19 98.2 163 42.9
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 6.9e-19 97.8 149 43.6
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 9.1e-19 97.4 133 44.4
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 2.0e-18 96.3 152 43.4
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 4.5e-18 95.1 120 47.5
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 1.0e-17 94.0 156 41.7
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 2.2e-17 92.8 116 48.3
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 2.9e-17 92.4 125 45.6
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 3.3e-13 79.0 102 50.0
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 3.3e-13 79.0 193 33.7
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 3.7e-12 75.5 98 45.9
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 1.1e-11 73.9 123 42.3
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 2.4e-11 72.8 174 33.9
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 2.4e-11 72.8 156 35.9
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 3.1e-11 72.4 114 46.5
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 9.1e-11 70.9 72 52.8
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 5.9e-10 68.2 101 40.6
AUR62033229 Chenopodium quinoa HOM05D004757 ORTHO05D005743 5.0e-09 65.1 90 48.9
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 1.2e-07 60.5 110 40.9
AUR62021312 Chenopodium quinoa HOM05D004757 ORTHO05D005743 1.6e-07 60.1 93 48.4


User provided reference genes

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