Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 4.2e-259 897.5 450 100.0
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 7.4e-256 886.7 450 98.9
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 1.6e-146 523.5 271 97.8
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 5.5e-110 402.1 269 80.7
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 7.9e-109 398.3 269 79.9
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 7.9e-109 398.3 270 78.5
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 2.6e-107 393.3 269 78.8
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 4.4e-107 392.5 269 78.4
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.3e-106 391.0 269 78.4
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 2.2e-106 390.2 270 77.8
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 4.8e-106 389.0 269 77.7
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 6.3e-106 388.7 270 77.4
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.4e-105 387.5 271 76.8
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 2.4e-105 386.7 270 77.0
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 5.3e-105 385.6 270 77.4
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 1.9e-86 323.9 269 66.9
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 1.4e-76 291.2 274 58.0
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 2.6e-75 287.0 258 66.3
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 6.8e-68 262.3 276 53.3
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 1.5e-67 261.2 279 54.1
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 9.8e-67 258.5 279 52.0
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 9.8e-67 258.5 278 52.2
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 1.7e-66 257.7 278 51.8
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 1.7e-66 257.7 274 51.8
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 6.4e-66 255.8 279 51.3
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 6.4e-66 255.8 279 49.5
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 8.3e-66 255.4 276 50.7
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 2.4e-65 253.8 278 50.7
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 1.2e-64 251.5 274 50.4
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 4.6e-64 249.6 279 50.9
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 4.6e-64 249.6 282 48.6
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 6.0e-64 249.2 278 50.7
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 7.8e-64 248.8 279 50.9
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 1.0e-63 248.4 272 49.3
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 1.0e-63 248.4 277 51.6
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 1.0e-63 248.4 274 51.5
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 1.7e-63 247.7 279 50.5
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 2.3e-63 247.3 272 48.9
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 2.3e-63 247.3 275 50.5
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 3.0e-63 246.9 289 48.1
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 3.0e-63 246.9 277 48.7
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 3.9e-63 246.5 279 49.5
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 8.6e-63 245.4 273 48.7
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 1.5e-62 244.6 276 50.4
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 2.5e-62 243.8 276 50.0
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 2.5e-62 243.8 274 49.6
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 3.3e-62 243.4 272 49.3
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 3.3e-62 243.4 276 49.6
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 4.3e-62 243.0 271 49.1
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 5.6e-62 242.7 280 50.7
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 7.3e-62 242.3 276 48.6
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 2.8e-61 240.4 277 49.5
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 3.6e-61 240.0 272 49.6
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 6.2e-61 239.2 280 47.9
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 6.2e-61 239.2 274 48.5
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 8.0e-61 238.8 265 50.9
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 1.1e-60 238.4 278 49.3
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 1.4e-60 238.0 280 47.9
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 1.4e-60 238.0 273 50.2
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 6.8e-60 235.7 276 48.6
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 6.8e-60 235.7 275 48.4
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 6.8e-60 235.7 279 47.3
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.6e-59 233.8 276 48.9
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 4.4e-59 233.0 303 47.2
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 4.4e-59 233.0 277 48.0
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 1.3e-58 231.5 281 48.4
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 3.7e-58 229.9 276 48.6
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 8.3e-58 228.8 277 46.9
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 8.3e-58 228.8 289 45.7
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 1.1e-57 228.4 279 47.0
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 1.4e-57 228.0 274 46.7
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 4.1e-57 226.5 274 47.1
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 7.1e-57 225.7 271 46.1
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 7.1e-57 225.7 272 46.3
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 9.2e-57 225.3 277 48.0
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 1.2e-56 224.9 276 48.6
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 1.2e-56 224.9 275 46.5
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 3.5e-56 223.4 276 48.6
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 1.3e-55 221.5 279 46.2
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 2.3e-55 220.7 271 45.0
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 5.1e-55 219.5 273 46.9
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 8.6e-55 218.8 279 47.0
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 1.5e-54 218.0 273 46.2
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 4.3e-54 216.5 275 45.1
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 5.6e-54 216.1 273 45.4
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 5.6e-54 216.1 268 44.8
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 7.3e-54 215.7 278 45.0
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 7.3e-54 215.7 274 44.2
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 9.5e-54 215.3 338 39.1
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 4.0e-52 209.9 250 49.6
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 6.8e-52 209.1 274 43.8
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 4.4e-51 206.5 277 42.2
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 5.8e-51 206.1 278 44.2
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 1.3e-50 204.9 268 45.9
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 1.7e-50 204.5 274 44.5
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 2.2e-50 204.1 275 44.0
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 6.4e-50 202.6 256 48.8
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 7.1e-49 199.1 274 44.2
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 2.1e-48 197.6 262 47.3
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 3.3e-46 190.3 274 40.5
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 8.1e-45 185.7 262 46.6
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 2.0e-43 181.0 256 42.2
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 2.7e-40 170.6 257 45.1
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 3.3e-38 163.7 241 40.2
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 7.6e-35 152.5 187 47.1
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 1.3e-34 151.8 249 39.4
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 3.2e-33 147.1 195 41.0
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 1.9e-30 137.9 257 40.5
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 4.3e-30 136.7 276 36.6
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 7.3e-30 136.0 104 71.2
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 8.1e-29 132.5 105 69.5
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 1.8e-28 131.3 172 43.6
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 9.9e-27 125.6 278 32.4
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 1.3e-26 125.2 257 37.4
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 1.9e-25 121.3 284 30.6
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 1.8e-23 114.8 288 29.5
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 5.1e-23 113.2 291 31.3
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 7.4e-22 109.4 269 30.5
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 2.4e-20 104.4 138 42.0
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 2.6e-19 100.9 135 44.4
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 3.4e-19 100.5 186 37.6
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 1.1e-17 95.5 88 54.5
BcaB01g00855 Brassica carinata HOM05D016513 ORTHO05D032437 4.2e-17 93.6 72 65.3
C03p70920 Brassica napus HOM05D016513 ORTHO05D027391 2.1e-16 91.3 103 48.5
BolC3t19367H Brassica oleracea HOM05D016513 ORTHO05D027391 3.5e-16 90.5 103 48.5
BcaC07g37848 Brassica carinata HOM05D016513 ORTHO05D027391 7.9e-16 89.4 119 45.4
BolC8t48236H Brassica oleracea HOM05D016513 ORTHO05D027391 7.9e-16 89.4 119 45.4
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 5.8e-11 73.2 64 53.1
CARHR240490 Cardamine hirsuta HOM05D004893 ORTHO05D006320 7.1e-09 66.2 62 51.6
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 2.7e-08 64.3 39 79.5
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.0e-07 62.4 66 43.9
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 1.3e-07 62.0 48 66.7
Peaxi162Scf00309g00810 Petunia axillaris HOM05D001003 ORTHO05D007825 1.1e-06 58.9 63 41.3
Haze_05151 Corylus avellana HOM05D001003 ORTHO05D007825 7.4e-06 56.2 45 55.6


User provided reference genes

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