Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 1.3e-186 656.4 367 100.0
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 1.3e-186 656.4 367 100.0
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 7.7e-179 630.6 367 97.0
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 1.9e-177 625.9 395 87.3
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 2.8e-176 622.1 391 90.3
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 6.8e-175 617.5 353 97.7
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 9.8e-174 613.6 371 92.7
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 2.3e-170 602.4 382 86.6
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 2.1e-168 595.9 383 86.2
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 6.2e-168 594.3 384 90.1
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 6.4e-165 584.3 371 86.8
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 4.3e-153 545.0 382 83.0
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 2.1e-147 526.2 377 81.2
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 2.5e-137 492.7 352 77.8
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 9.6e-137 490.7 350 78.0
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 2.1e-136 489.6 350 77.4
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 3.6e-136 488.8 346 79.2
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 8.1e-136 487.6 350 76.6
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 1.1e-135 487.3 370 73.8
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 4.0e-135 485.3 365 74.8
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 4.0e-135 485.3 350 76.3
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 9.0e-135 484.2 348 79.3
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 1.5e-134 483.4 344 77.0
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 2.0e-134 483.0 368 74.2
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 2.6e-134 482.6 368 74.2
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 5.8e-134 481.5 350 76.3
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 1.7e-133 479.9 350 77.4
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 2.2e-133 479.6 367 74.4
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 2.9e-133 479.2 367 73.3
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 6.4e-133 478.0 344 75.0
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 6.4e-133 478.0 342 76.3
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 6.4e-133 478.0 367 74.9
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 8.4e-133 477.6 362 71.8
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 8.4e-133 477.6 382 70.7
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 1.1e-132 477.2 369 74.5
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 1.4e-132 476.9 369 73.7
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 1.9e-132 476.5 350 78.0
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 1.9e-132 476.5 382 73.6
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 3.2e-132 475.7 360 74.4
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 7.1e-132 474.6 360 74.2
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 9.3e-132 474.2 357 73.7
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 1.2e-131 473.8 347 76.4
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 1.6e-131 473.4 344 76.7
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 2.1e-131 473.0 350 75.4
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 2.7e-131 472.6 361 75.3
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 2.7e-131 472.6 346 77.2
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 6.0e-131 471.5 344 76.5
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 1.8e-130 469.9 350 77.1
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 3.9e-130 468.8 346 74.9
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 5.1e-130 468.4 350 76.9
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 6.7e-130 468.0 368 74.2
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 6.7e-130 468.0 346 77.7
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 1.1e-129 467.2 344 73.8
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 1.5e-129 466.8 346 77.7
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 2.5e-129 466.1 354 72.3
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 2.5e-129 466.1 345 73.3
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 3.3e-129 465.7 348 72.4
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 3.3e-129 465.7 353 76.8
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 4.3e-129 465.3 352 72.4
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 4.3e-129 465.3 346 72.8
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 7.4e-129 464.5 373 70.5
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 7.4e-129 464.5 362 73.2
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 7.4e-129 464.5 348 75.0
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 9.6e-129 464.2 350 77.1
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 9.6e-129 464.2 345 73.0
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 1.3e-128 463.8 345 73.0
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 1.3e-128 463.8 373 68.6
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 2.1e-128 463.0 369 72.1
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 2.8e-128 462.6 367 68.9
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 3.7e-128 462.2 346 77.5
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 6.2e-128 461.5 361 74.8
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 6.2e-128 461.5 355 73.8
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 8.1e-128 461.1 367 75.7
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 2.4e-127 459.5 357 70.9
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 2.4e-127 459.5 359 69.6
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 1.2e-126 457.2 331 75.8
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 2.0e-126 456.4 344 71.2
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 2.0e-126 456.4 410 66.8
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 4.5e-126 455.3 368 71.7
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 7.6e-126 454.5 352 69.6
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 7.6e-126 454.5 344 77.3
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 7.6e-126 454.5 344 77.3
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 2.2e-125 453.0 344 76.2
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 3.8e-125 452.2 351 74.9
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 8.4e-125 451.1 368 71.5
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 4.2e-124 448.7 346 71.1
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 9.3e-124 447.6 342 73.4
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 9.3e-124 447.6 354 73.4
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 1.2e-123 447.2 342 69.6
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 1.0e-122 444.1 342 75.1
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 1.8e-122 443.4 285 87.0
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 1.8e-122 443.4 344 74.4
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 2.3e-122 443.0 331 76.7
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 8.7e-122 441.0 346 73.1
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 2.5e-121 439.5 337 73.9
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 4.3e-121 438.7 360 68.9
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 7.4e-121 438.0 344 71.5
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 1.6e-120 436.8 367 71.4
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 8.2e-120 434.5 355 71.8
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 2.4e-119 433.0 352 72.7
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 2.0e-118 429.9 353 72.5
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 1.7e-117 426.8 343 73.8
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.1e-116 424.1 368 70.7
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.4e-116 423.7 327 76.1
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 1.6e-115 420.2 329 75.1
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 2.1e-115 419.9 344 70.3
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 6.0e-115 418.3 346 67.6
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 3.0e-114 416.0 370 68.4
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 6.7e-114 414.8 356 69.9
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 3.7e-112 409.1 348 64.9
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 6.9e-111 404.8 351 64.1
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 4.5e-110 402.1 350 70.6
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 2.9e-109 399.4 350 66.3
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 4.2e-108 395.6 298 75.5
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 9.3e-108 394.4 312 69.2
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 1.2e-107 394.0 335 66.9
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 5.1e-106 388.7 348 61.2
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 4.1e-103 379.0 364 60.4
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 2.5e-100 369.8 346 65.9
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 4.2e-100 369.0 340 60.3
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.8e-98 363.6 344 59.3
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.5e-97 360.5 313 69.0
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 7.4e-97 358.2 324 61.7
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.8e-96 356.3 288 66.0
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 1.8e-95 353.6 292 74.3
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 3.4e-94 349.4 344 57.6
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 4.5e-94 349.0 282 69.9
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 1.0e-93 347.8 268 70.9
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 1.1e-92 344.4 333 56.8
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 2.1e-91 340.1 333 63.1
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.8e-90 337.0 295 66.4
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 6.7e-90 335.1 348 58.0
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 8.2e-88 328.2 247 71.7
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.2e-86 324.3 359 53.2
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 3.6e-83 312.8 291 68.7
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 4.8e-80 302.4 218 78.4
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 2.0e-78 297.0 280 62.9
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.3e-74 283.5 224 72.3
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 1.1e-63 248.1 174 77.0
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 3.9e-45 186.4 124 81.5
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 3.3e-36 156.8 137 66.4
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.0e-33 147.5 118 66.9
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 1.9e-31 141.0 132 64.4
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 2.4e-31 140.6 133 60.9
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 7.3e-28 129.0 79 74.7
BolC9t54329H Brassica oleracea HOM05D004327 ORTHO05D005032 3.6e-27 126.7 72 97.2
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 3.6e-27 126.7 70 81.4
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 5.2e-26 122.9 70 80.0
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 3.8e-24 116.7 101 64.4
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 3.9e-21 106.7 94 60.6
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.1e-20 105.1 93 51.6
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 7.6e-17 92.4 82 62.2
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 1.1e-15 88.6 81 63.0
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 2.7e-14 84.0 130 45.4
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 5.1e-13 79.7 80 56.2
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 5.1e-13 79.7 58 77.6
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.3e-11 75.1 98 51.0
COL.COLO4_28287 Corchorus olitorius HOM05D004327 ORTHO05D005032 1.1e-10 72.0 66 66.7
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 1.4e-10 71.6 235 31.9
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 4.0e-10 70.1 42 78.6
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 7.6e-09 65.9 64 51.6
BcaC03g14154 Brassica carinata HOM05D004327 ORTHO05D032179 1.1e-07 62.0 182 31.3


User provided reference genes

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