Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p14230 Brassica napus HOM05D003414 ORTHO05D003913 7.8e-49 196.8 100 100.0
BolC9t54324H Brassica oleracea HOM05D003414 ORTHO05D003913 1.3e-43 179.5 100 92.0
BcaC06g36459 Brassica carinata HOM05D003414 ORTHO05D003913 6.6e-24 114.0 76 73.7
C07p04000 Brassica napus HOM05D001097 ORTHO05D001009 6.6e-24 114.0 76 73.7
BolC7t40789H Brassica oleracea HOM05D003414 ORTHO05D003913 6.6e-24 114.0 76 73.7
BcaB03g16667 Brassica carinata HOM05D003414 ORTHO05D003913 2.5e-23 112.1 79 73.4
BraA07t27987Z Brassica rapa HOM05D003414 ORTHO05D003913 2.5e-23 112.1 76 72.4
A07p01870 Brassica napus HOM05D001097 ORTHO05D001009 1.3e-22 109.8 76 71.1
Sp3g32260 Schrenkiella parvula HOM05D003414 ORTHO05D003913 3.6e-22 108.2 77 70.1
Thhalv10014432m.g Eutrema salsugineum HOM05D003414 ORTHO05D003913 6.2e-22 107.5 75 73.3
Aa31LG8G15890 Aethionema arabicum HOM05D003414 ORTHO05D003913 1.1e-21 106.7 74 70.3
AT5G05670 Arabidopsis thaliana HOM05D003414 ORTHO05D003913 1.8e-21 105.9 75 72.0
AL3G53170 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 3.1e-21 105.1 73 69.9
Carub.0006s0456 Capsella rubella HOM05D003414 ORTHO05D003913 3.1e-21 105.1 75 72.0
AL6G15560 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 4.0e-21 104.8 75 72.0
AT2G18770 Arabidopsis thaliana HOM05D003414 ORTHO05D003913 1.2e-20 103.2 73 71.2
Carub.0003s3304 Capsella rubella HOM05D003414 ORTHO05D003913 1.5e-20 102.8 73 68.5
BcaC06g32272 Brassica carinata HOM05D003414 ORTHO05D003913 3.4e-20 101.7 74 67.6
CARHR109370 Cardamine hirsuta HOM05D003414 ORTHO05D003913 3.4e-20 101.7 72 72.2
Sp6g37220 Schrenkiella parvula HOM05D003414 ORTHO05D003913 4.5e-20 101.3 74 67.6
C09p71170 Brassica napus HOM05D003414 ORTHO05D003913 5.8e-20 100.9 74 67.6
CARHR207610 Cardamine hirsuta HOM05D003414 ORTHO05D003913 7.6e-20 100.5 74 66.2
BcaB01g05755 Brassica carinata HOM05D003414 ORTHO05D003913 1.3e-19 99.8 75 69.3
BraA03t09601Z Brassica rapa HOM05D003414 ORTHO05D003913 2.2e-19 99.0 75 66.7
BraA10t45110Z Brassica rapa HOM05D003414 ORTHO05D003913 2.2e-19 99.0 74 66.2
Thhalv10022817m.g Eutrema salsugineum HOM05D003414 ORTHO05D003913 2.9e-19 98.6 76 65.8
C03p02730 Brassica napus HOM05D003414 ORTHO05D003913 4.9e-19 97.8 75 66.7
BcaB01g05959 Brassica carinata HOM05D003414 ORTHO05D003913 1.4e-18 96.3 75 65.3
BolC3t12827H Brassica oleracea HOM05D003414 ORTHO05D003913 1.4e-18 96.3 75 65.3
THA.LOC104807784 Tarenaya hassleriana HOM05D003414 ORTHO05D003913 3.2e-18 95.1 74 66.2
BolC9t59879H Brassica oleracea HOM05D003414 ORTHO05D003913 5.4e-18 94.4 81 59.3
THA.LOC104824779 Tarenaya hassleriana HOM05D003414 ORTHO05D003913 2.7e-17 92.0 73 65.8
Potri.002G020900 Populus trichocarpa HOM05D003414 ORTHO05D003913 5.1e-16 87.8 74 55.4
Sabra02G0017100 Salix brachista HOM05D000201 ORTHO05D000490 6.7e-16 87.4 74 56.8
PGSC0003DMG400000451 Solanum tuberosum HOM05D003414 ORTHO05D003913 1.5e-15 86.3 75 57.3
CsaV3_5G031410 Cucumis sativus L. HOM05D003414 ORTHO05D003913 1.9e-15 85.9 72 59.7
Sopen11g019580 Solanum pennellii HOM05D003414 ORTHO05D003913 4.3e-15 84.7 75 56.0
MELO3C011981.2 Cucumis melo HOM05D003414 ORTHO05D003913 5.6e-15 84.3 72 58.3
Solyc11g043150.2 Solanum lycopersicum HOM05D003414 ORTHO05D003913 5.6e-15 84.3 75 56.0
Nitab4.5_0000329g0140 Nicotiana tabacum HOM05D003414 ORTHO05D003913 7.4e-15 84.0 75 54.7
ClCG05G025490 Citrullus lanatus HOM05D003414 ORTHO05D003913 2.1e-14 82.4 72 58.3
Nitab4.5_0001819g0040 Nicotiana tabacum HOM05D003414 ORTHO05D003913 2.8e-14 82.0 75 54.7
Nitab4.5_0000570g0070 Nicotiana tabacum HOM05D003414 ORTHO05D003913 4.8e-14 81.3 75 53.3
Nitab4.5_0004438g0070 Nicotiana tabacum HOM05D003414 ORTHO05D003913 1.1e-13 80.1 75 52.0
CANSAT01G0332 Cannabis sativa HOM05D003414 ORTHO05D003913 2.4e-13 79.0 71 49.3
GSVIVG01013784001 Vitis vinifera HOM05D003414 ORTHO05D003913 2.4e-13 79.0 72 54.2
Dinv17534 Davidia involucrata HOM05D003414 ORTHO05D003913 3.1e-13 78.6 62 62.9
Peaxi162Scf00086g00329 Petunia axillaris HOM05D003414 ORTHO05D003913 3.1e-13 78.6 75 50.7
MSTRG.13359 Avicennia marina HOM05D003414 ORTHO05D003913 6.9e-13 77.4 75 52.0
Actinidia13495 Actinidia chinensis HOM05D003414 ORTHO05D003913 9.0e-13 77.0 72 52.8
Sed0009810 Sechium edule HOM05D003414 ORTHO05D003913 1.2e-12 76.6 71 56.3
Prupe.4G272800 Prunus persica HOM05D003414 ORTHO05D003913 2.6e-12 75.5 69 53.6
Solyc03g112450.4 Solanum lycopersicum HOM05D003414 ORTHO05D003913 2.6e-12 75.5 75 52.0
Rhsim12G0043300 Rhododendron simsii HOM05D003414 ORTHO05D003913 3.4e-12 75.1 77 49.4
Sopen03g031530 Solanum pennellii HOM05D003414 ORTHO05D003913 3.4e-12 75.1 75 52.0
SalBow8G5473 Salvia bowleyana HOM05D003414 ORTHO05D003913 4.5e-12 74.7 75 50.7
CAN.G546.30 Capsicum annuum HOM05D003414 ORTHO05D003913 5.8e-12 74.3 75 48.0
Nn3g18717 Nelumbo nucifera HOM05D003414 ORTHO05D003913 5.8e-12 74.3 74 51.4
Sed0017421 Sechium edule HOM05D003414 ORTHO05D003913 5.8e-12 74.3 72 50.0
A10p30690 Brassica napus HOM05D003414 ORTHO05D003913 7.6e-12 73.9 74 54.1
TWI18G0866 Tripterygium wilfordii HOM05D003414 ORTHO05D003913 7.6e-12 73.9 63 55.6
Hma1.2p1_0160F.1_g071100 Hydrangea macrophylla HOM05D003414 ORTHO05D003913 1.0e-11 73.6 72 51.4
CSS0045981 Camellia sinensis var. sinensis HOM05D003414 ORTHO05D003913 1.7e-11 72.8 71 49.3
Eucgr.H02550 Eucalyptus grandis HOM05D003414 ORTHO05D003913 1.7e-11 72.8 83 47.0
Gohir.A03G000026 Gossypium hirsutum HOM05D003414 ORTHO05D003913 1.7e-11 72.8 60 55.0
MD06G1037800 Malus domestica HOM05D003414 ORTHO05D003913 1.7e-11 72.8 76 47.4
unitig_22.g6429 Utricularia gibba HOM05D003414 ORTHO05D003913 1.7e-11 72.8 75 45.3
Oeu056411.1 Olea europaea HOM05D003414 ORTHO05D003913 2.2e-11 72.4 75 48.0
Peaxi162Scf00086g00133 Petunia axillaris HOM05D003414 ORTHO05D003913 2.2e-11 72.4 75 45.3
Gohir.D03G176800 Gossypium hirsutum HOM05D003414 ORTHO05D003913 4.9e-11 71.2 60 55.0
Manes.13G027800 Manihot esculenta HOM05D003414 ORTHO05D003913 4.9e-11 71.2 64 54.7
MD10G1002700 Malus domestica HOM05D003414 ORTHO05D003913 6.5e-11 70.9 65 50.8
Atru.chr11.2070 Acer truncatum HOM05D003414 ORTHO05D003913 8.4e-11 70.5 76 48.7
CiPaw.05G186600 Carya illinoinensis HOM05D003414 ORTHO05D003913 1.1e-10 70.1 58 56.9
Duzib084G0257 Durio zibethinus HOM05D003414 ORTHO05D003913 2.5e-10 68.9 56 58.9
Gohir.A08G153100 Gossypium hirsutum HOM05D003414 ORTHO05D003913 2.5e-10 68.9 55 58.2
Gorai.004G181700 Gossypium raimondii HOM05D003414 ORTHO05D003913 2.5e-10 68.9 55 58.2
Glyma.01G029000 Glycine max HOM05D003414 ORTHO05D003913 3.2e-10 68.6 71 52.1
Glyma.02G036200 Glycine max HOM05D003414 ORTHO05D003913 3.2e-10 68.6 71 52.1
Manes.12G026100 Manihot esculenta HOM05D003414 ORTHO05D003913 3.2e-10 68.6 74 48.6
COL.COLO4_16919 Corchorus olitorius HOM05D003414 ORTHO05D003913 4.2e-10 68.2 51 66.7
TAR629G3074 Trochodendron aralioides HOM05D003414 ORTHO05D003913 4.2e-10 68.2 51 64.7
Ca_03139_v3 Cicer arietinum L. HOM05D003414 ORTHO05D003913 5.5e-10 67.8 76 43.4
DCAR_001175 Daucus carota HOM05D003414 ORTHO05D003913 5.5e-10 67.8 64 53.1
DCAR_010112 Daucus carota HOM05D003414 ORTHO05D003913 5.5e-10 67.8 64 53.1
TAR371G0246 Trochodendron aralioides HOM05D003414 ORTHO05D003913 7.1e-10 67.4 71 53.5
FAN11G3592 Fragaria x ananassa HOM05D003414 ORTHO05D003913 9.3e-10 67.0 56 58.9
FAN21G2683 Fragaria x ananassa HOM05D003414 ORTHO05D003913 9.3e-10 67.0 56 57.1
RcHm_v2.0_Chr4g0406261 Rosa chinensis HOM05D003414 ORTHO05D003913 9.3e-10 67.0 86 44.2
FAN07G0063 Fragaria x ananassa HOM05D003414 ORTHO05D003913 1.2e-09 66.6 68 50.0
HanXRQChr13g0415431 Helianthus annuus HOM05D003414 ORTHO05D003913 1.2e-09 66.6 76 43.4
Phvul.002G064800 Phaseolus vulgaris HOM05D003414 ORTHO05D003913 1.2e-09 66.6 75 48.0
Lsat_1_v5_gn_6_83720 Lactuca sativa HOM05D003414 ORTHO05D003913 1.6e-09 66.2 64 50.0
Duzib205G0939 Durio zibethinus HOM05D003414 ORTHO05D003913 3.5e-09 65.1 57 54.4
Gorai.003G186100 Gossypium raimondii HOM05D003414 ORTHO05D003913 3.5e-09 65.1 65 52.3
Medtr4g071550 Medicago truncatula HOM05D003414 ORTHO05D003913 3.5e-09 65.1 76 43.4
VMungo1215G2070 Vigna mungo HOM05D003414 ORTHO05D003913 3.5e-09 65.1 71 46.5
Psat7g182200 Pisum sativum HOM05D003414 ORTHO05D003913 4.6e-09 64.7 56 55.4
Migut.L01464 Erythranthe guttata HOM05D003414 ORTHO05D003913 6.0e-09 64.3 69 49.3
PSO063G3439 Papaver somniferum HOM05D003414 ORTHO05D003913 6.0e-09 64.3 73 39.7
RcHm_v2.0_Chr2g0115401 Rosa chinensis HOM05D003414 ORTHO05D003913 6.0e-09 64.3 86 41.9
RcHm_v2.0_Chr7g0219271 Rosa chinensis HOM05D003414 ORTHO05D003913 6.0e-09 64.3 86 43.0
SGA_v2.0_scaffold63G21706 Striga asiatica HOM05D003414 ORTHO05D003913 6.0e-09 64.3 75 52.0
ECA232G2835 Erigeron canadensis HOM05D003414 ORTHO05D003913 7.9e-09 63.9 65 46.2
FvH4_3g28340 Fragaria vesca HOM05D003414 ORTHO05D003913 7.9e-09 63.9 56 57.1
PSO832G1583 Papaver somniferum HOM05D003414 ORTHO05D003913 7.9e-09 63.9 73 39.7
QL03p059258 Quercus lobata HOM05D003414 ORTHO05D003913 1.0e-08 63.5 57 50.9
Dinv29446 Davidia involucrata HOM05D003414 ORTHO05D003913 1.3e-08 63.2 51 62.7
arahy.Tifrunner.gnm1.ann1.1EZN5T Arachis hypogaea HOM05D003414 ORTHO05D003913 2.3e-08 62.4 75 46.7
Lalb_Chr16g0382141 Lupinus albus HOM05D003414 ORTHO05D003913 2.3e-08 62.4 71 45.1
Thecc.03G311500 Theobroma cacao HOM05D003414 ORTHO05D003913 2.3e-08 62.4 51 60.8
Actinidia08151 Actinidia chinensis HOM05D003414 ORTHO05D003913 3.0e-08 62.0 71 45.1
arahy.Tifrunner.gnm1.ann1.566SHA Arachis hypogaea HOM05D003414 ORTHO05D003913 3.0e-08 62.0 75 46.7
FvH4_4g10641 Fragaria vesca HOM05D003414 ORTHO05D003913 3.0e-08 62.0 59 50.8
FAN12G1958 Fragaria x ananassa HOM05D003414 ORTHO05D003913 3.0e-08 62.0 59 50.8
TPR.G16233 Trifolium pratense HOM05D003414 ORTHO05D003913 3.0e-08 62.0 74 45.9
arahy.Tifrunner.gnm1.ann1.27SX2S Arachis hypogaea HOM05D003414 ORTHO05D003913 3.9e-08 61.6 75 46.7
Lj2g0023712 Lotus japonicus HOM05D003414 ORTHO05D003913 5.1e-08 61.2 56 51.8
PGR119G0039 Punica granatum HOM05D003414 ORTHO05D003913 5.1e-08 61.2 81 39.5
Aqoxy3G02886 Aquilegia oxysepala HOM05D003414 ORTHO05D003913 6.7e-08 60.8 53 52.8
Cc01_g10380 Coffea canephora HOM05D003414 ORTHO05D003913 6.7e-08 60.8 75 41.3
Lalb_Chr09g0326281 Lupinus albus HOM05D003414 ORTHO05D003913 6.7e-08 60.8 74 44.6
MBI10_g27995_MAGBIO Magnolia biondii HOM05D003414 ORTHO05D003913 6.7e-08 60.8 83 41.0
Glyma.08G284800 Glycine max HOM05D003414 ORTHO05D003913 8.7e-08 60.5 68 48.5
Haze_12213 Corylus avellana HOM05D003414 ORTHO05D003913 1.1e-07 60.1 51 56.9
Medtr5g033930 Medicago truncatula HOM05D003414 ORTHO05D003913 1.1e-07 60.1 74 43.2
A06p14670 Brassica napus HOM05D003414 ORTHO05D099663 1.5e-07 59.7 56 50.0
Prupe.5G031200 Prunus persica HOM05D003414 ORTHO05D003913 1.5e-07 59.7 51 54.9
FAN22G0068 Fragaria x ananassa HOM05D003414 ORTHO05D003913 1.9e-07 59.3 56 51.8
Hund09448 Selenicereus undatus HOM05D003414 ORTHO05D003913 1.9e-07 59.3 59 50.8
Cfa009179 Carpinus fangiana HOM05D003414 ORTHO05D003913 3.3e-07 58.5 51 54.9
MSTRG.7908 Avicennia marina HOM05D003414 ORTHO05D003913 5.7e-07 57.8 74 41.9
Lj6A808T47 Lonicera japonica HOM05D003414 ORTHO05D003913 5.7e-07 57.8 71 42.3
TPR.G21092 Trifolium pratense HOM05D003414 ORTHO05D003913 1.3e-06 56.6 70 42.9
HPP92_024705 Vanilla planifolia HOM05D003414 ORTHO05D003913 1.3e-06 56.6 71 40.8
Aqoxy6G00029 Aquilegia oxysepala HOM05D003414 ORTHO05D003913 2.1e-06 55.8 73 42.5
HPP92_005090 Vanilla planifolia HOM05D003414 ORTHO05D003913 2.8e-06 55.5 71 39.4
ATR0199G007 Amborella trichopoda HOM05D003414 ORTHO05D003913 3.7e-06 55.1 65 46.2
EL10Ac5g10731 Beta vulgaris HOM05D003414 ORTHO05D003913 3.7e-06 55.1 74 43.2
Sc12g0005240 Simmondsia chinensis HOM05D003414 ORTHO05D003913 4.8e-06 54.7 76 36.8


User provided reference genes

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