Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p13630 Brassica napus HOM05D004095 ORTHO05D003197 1.9e-145 519.2 281 100.0
BcaC04g22942 Brassica carinata HOM05D004095 ORTHO05D003197 5.1e-138 494.6 290 91.7
A09p11580 Brassica napus HOM05D004095 ORTHO05D003197 4.0e-127 458.4 293 83.3
BraA09t36805Z Brassica rapa HOM05D004095 ORTHO05D003197 1.5e-118 429.9 295 84.4
C07p05400 Brassica napus HOM05D004095 ORTHO05D003197 2.8e-67 259.6 341 53.1
Thhalv10022767m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 3.6e-67 259.2 357 54.3
BolC7t40940H Brassica oleracea HOM05D004095 ORTHO05D003197 1.8e-66 256.9 341 52.8
BcaB07g31703 Brassica carinata HOM05D004095 ORTHO05D003197 1.2e-65 254.2 292 57.5
BcaC06g36322 Brassica carinata HOM05D004095 ORTHO05D003197 3.9e-53 212.6 324 48.1
BraA07t28113Z Brassica rapa HOM05D004095 ORTHO05D003197 1.2e-51 207.6 321 46.4
AT2G17787 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 2.8e-51 206.5 338 46.4
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 2.0e-49 200.3 318 44.7
AL3G50810 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 1.6e-43 180.6 340 45.9
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 6.2e-43 178.7 307 46.9
Carub.0003s3193 Capsella rubella HOM05D004095 ORTHO05D003197 6.4e-40 168.7 340 40.6
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 3.9e-37 159.5 351 41.6
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 4.3e-36 156.0 330 41.2
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 2.8e-35 153.3 345 39.1
A03p63990 Brassica napus HOM05D004095 ORTHO05D003197 1.6e-30 137.5 370 37.0
BraA03t15466Z Brassica rapa HOM05D004095 ORTHO05D003197 2.1e-30 137.1 373 36.7
AL7G15100 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 5.6e-28 129.0 369 35.2
Aa31LG6G12890 Aethionema arabicum HOM05D004095 ORTHO05D003197 4.7e-27 125.9 393 34.6
AT4G35940 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 1.4e-26 124.4 379 33.5
Carub.0007s0428 Capsella rubella HOM05D004095 ORTHO05D003197 1.4e-26 124.4 351 35.6
BraA01t00262Z Brassica rapa HOM05D004095 ORTHO05D003197 3.1e-26 123.2 354 37.6
BcaNung05051 Brassica carinata HOM05D004095 ORTHO05D003197 1.5e-25 120.9 360 36.4
Sp7g33720 Schrenkiella parvula HOM05D004095 ORTHO05D003197 9.9e-25 118.2 357 34.2
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 7.1e-23 112.1 335 36.4
BolC7t46570H Brassica oleracea HOM05D004095 ORTHO05D003197 7.1e-23 112.1 382 33.0
BcaNung00778 Brassica carinata HOM05D004095 ORTHO05D003197 4.6e-22 109.4 341 37.5
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 3.9e-21 106.3 323 36.2
Thhalv10027062m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 3.9e-21 106.3 250 35.6
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 1.1e-20 104.8 321 32.1
C07p61450 Brassica napus HOM05D004095 ORTHO05D003197 1.9e-20 104.0 360 33.9
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 5.6e-20 102.4 331 35.0
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 3.6e-19 99.8 350 34.6
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 1.1e-18 98.2 342 33.0
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.4e-18 97.1 341 32.8
A01p02760 Brassica napus HOM05D004095 ORTHO05D003197 6.9e-18 95.5 329 35.3
BolC9t54253H Brassica oleracea HOM05D004095 ORTHO05D003197 1.6e-14 84.3 39 100.0
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 7.9e-14 82.0 342 31.6
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 7.9e-14 82.0 334 33.5
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 5.1e-13 79.3 313 33.5
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 1.9e-12 77.4 339 31.9
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 1.9e-12 77.4 106 40.6
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 7.4e-12 75.5 340 31.2
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 7.4e-12 75.5 313 33.5
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 9.6e-12 75.1 310 31.9
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.3e-11 74.7 329 31.9
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 3.7e-11 73.2 325 31.4
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 4.8e-11 72.8 307 31.9
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 4.8e-11 72.8 333 32.4
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.4e-10 71.2 123 35.0
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 6.9e-10 68.9 371 28.3
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 6.9e-10 68.9 325 31.4
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 6.9e-10 68.9 123 34.1
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 4.5e-09 66.2 113 40.7
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.3e-08 64.7 333 31.2
PGR119G1825 Punica granatum HOM05D004095 ORTHO05D003197 1.7e-08 64.3 88 42.0
CAN.G1517.6 Capsicum annuum HOM05D004095 ORTHO05D003197 3.8e-08 63.2 309 31.1
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 3.8e-08 63.2 335 28.7
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 4.9e-08 62.8 334 30.5
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 6.4e-08 62.4 91 41.8
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 1.1e-07 61.6 333 29.7
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 1.1e-07 61.6 311 27.7
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 2.4e-07 60.5 308 32.1
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 7.1e-07 58.9 337 30.0
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 9.3e-07 58.5 113 38.1
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 1.6e-06 57.8 94 34.0
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 2.7e-06 57.0 121 45.5
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 4.6e-06 56.2 312 29.8
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 6.0e-06 55.8 145 40.7
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 7.9e-06 55.5 110 34.5


User provided reference genes

Program Settings