Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23004 Brassica carinata HOM05D002799 ORTHO05D008889 1.4e-99 366.3 188 100.0
C09p13130 Brassica napus HOM05D002799 ORTHO05D008889 1.4e-99 366.3 188 100.0
A09p11140 Brassica napus HOM05D002799 ORTHO05D008889 8.5e-97 357.1 185 97.8
BraA09t36756Z Brassica rapa HOM05D002799 ORTHO05D008889 6.7e-94 347.4 180 97.8
BcaB07g31750 Brassica carinata HOM05D002799 ORTHO05D008889 3.3e-93 345.1 186 93.0
BolC9t54208H Brassica oleracea HOM05D002799 ORTHO05D008889 5.7e-93 344.4 176 100.0
AT2G16790 Arabidopsis thaliana HOM05D002799 ORTHO05D008889 7.2e-88 327.4 188 88.3
AL3G49530 Arabidopsis lyrata HOM05D002799 ORTHO05D008889 1.6e-87 326.2 187 87.7
Sp3g29930 Schrenkiella parvula HOM05D002799 ORTHO05D008889 2.7e-87 325.5 191 87.4
Carub.0003s3061 Capsella rubella HOM05D002799 ORTHO05D008889 6.1e-87 324.3 185 87.0
CARHR107040 Cardamine hirsuta HOM05D002799 ORTHO05D008889 2.2e-84 315.8 189 84.1
Thhalv10022876m.g Eutrema salsugineum HOM05D002799 ORTHO05D008889 1.7e-81 306.2 175 89.1
Aa31LG8G14030 Aethionema arabicum HOM05D002799 ORTHO05D008889 2.7e-71 272.3 174 76.4
THA.LOC104803694 Tarenaya hassleriana HOM05D002799 ORTHO05D008889 1.8e-67 259.6 187 70.1
Manes.08G164500 Manihot esculenta HOM05D002799 ORTHO05D008889 9.2e-59 230.7 171 67.8
Thecc.04G001600 Theobroma cacao HOM05D002799 ORTHO05D008889 5.9e-58 228.0 181 63.0
CSS0012005 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 3.8e-57 225.3 181 61.3
CSS0036576 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 3.8e-57 225.3 181 61.3
Potri.019G048200 Populus trichocarpa HOM05D002799 ORTHO05D008889 8.6e-57 224.2 175 62.9
Ciclev10032834m.g Citrus clementina HOM05D002799 ORTHO05D008889 7.3e-56 221.1 185 59.5
Actinidia08736 Actinidia chinensis HOM05D002799 ORTHO05D008889 9.5e-56 220.7 177 59.9
DCAR_010548 Daucus carota HOM05D002799 ORTHO05D008889 9.5e-56 220.7 181 59.1
Gohir.A11G169200 Gossypium hirsutum HOM05D002799 ORTHO05D008889 1.2e-55 220.3 184 59.8
Dinv29173 Davidia involucrata HOM05D002799 ORTHO05D008889 2.8e-55 219.2 177 60.5
Sabra19G0057600 Salix brachista HOM05D002799 ORTHO05D008889 4.7e-55 218.4 181 59.1
TWI60G0329 Tripterygium wilfordii HOM05D002799 ORTHO05D008889 4.7e-55 218.4 173 63.6
Gohir.D11G175400 Gossypium hirsutum HOM05D002799 ORTHO05D008889 6.1e-55 218.0 184 59.2
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea HOM05D002799 ORTHO05D008889 8.0e-55 217.6 178 57.3
Eucgr.K03383 Eucalyptus grandis HOM05D002799 ORTHO05D008889 8.0e-55 217.6 181 59.7
Gorai.007G188000 Gossypium raimondii HOM05D002799 ORTHO05D008889 8.0e-55 217.6 184 59.2
Cc05_g12950 Coffea canephora HOM05D002799 ORTHO05D008889 1.8e-54 216.5 179 58.7
ECA236G2689 Erigeron canadensis HOM05D002799 ORTHO05D008889 1.8e-54 216.5 177 58.8
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea HOM05D002799 ORTHO05D008889 2.3e-54 216.1 178 57.3
TAR629G0193 Trochodendron aralioides HOM05D002799 ORTHO05D008889 3.0e-54 215.7 182 58.2
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea HOM05D002799 ORTHO05D008889 4.0e-54 215.3 178 57.3
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea HOM05D002799 ORTHO05D008889 5.2e-54 214.9 178 56.7
Nitab4.5_0002229g0090 Nicotiana tabacum HOM05D002799 ORTHO05D008889 5.2e-54 214.9 181 58.6
Nitab4.5_0000207g0420 Nicotiana tabacum HOM05D002799 ORTHO05D008889 6.8e-54 214.5 181 58.6
GSVIVG01024450001 Vitis vinifera HOM05D002799 ORTHO05D008889 6.8e-54 214.5 181 59.7
Rhsim03G0220500 Rhododendron simsii HOM05D000526 ORTHO05D000956 2.0e-53 213.0 176 59.7
Sopen10g002540 Solanum pennellii HOM05D002799 ORTHO05D008889 3.4e-53 212.2 181 58.0
CAN.G1110.21 Capsicum annuum HOM05D002799 ORTHO05D008889 5.7e-53 211.5 181 58.6
RcHm_v2.0_Chr1g0383841 Rosa chinensis HOM05D002799 ORTHO05D008889 5.7e-53 211.5 180 57.2
Haze_00591 Corylus avellana HOM05D002799 ORTHO05D008889 1.3e-52 210.3 177 58.8
Prupe.2G323800 Prunus persica HOM05D002799 ORTHO05D008889 1.3e-52 210.3 181 57.5
Sed0001745 Sechium edule HOM05D002799 ORTHO05D008889 1.7e-52 209.9 178 59.0
FvH4_7g33591 Fragaria vesca HOM05D002799 ORTHO05D008889 2.2e-52 209.5 180 55.0
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.2e-52 209.5 180 55.6
Medtr8g063470 Medicago truncatula HOM05D002799 ORTHO05D008889 2.2e-52 209.5 181 58.0
Nn1g02011 Nelumbo nucifera HOM05D002799 ORTHO05D008889 2.2e-52 209.5 185 56.8
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.9e-52 209.1 180 55.6
FvH4_7g33580 Fragaria vesca HOM05D002799 ORTHO05D008889 3.7e-52 208.8 180 55.0
PGSC0003DMG400024993 Solanum tuberosum HOM05D002799 ORTHO05D008889 3.7e-52 208.8 177 57.6
MD07G1305700 Malus domestica HOM05D002799 ORTHO05D008889 4.9e-52 208.4 175 58.9
QL09p025834 Quercus lobata HOM05D002799 ORTHO05D008889 6.4e-52 208.0 177 57.1
MELO3C005426.2 Cucumis melo HOM05D002799 ORTHO05D008889 8.3e-52 207.6 174 60.9
TPR.G670 Trifolium pratense HOM05D002799 ORTHO05D008889 1.1e-51 207.2 177 58.2
Atru.chr12.2012 Acer truncatum HOM05D002799 ORTHO05D008889 1.4e-51 206.8 193 55.4
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.4e-51 206.8 180 55.0
CiPaw.05G237000 Carya illinoinensis HOM05D002799 ORTHO05D008889 4.1e-51 205.3 177 56.5
Migut.M01834 Erythranthe guttata HOM05D002799 ORTHO05D008889 1.2e-50 203.8 178 56.7
Lalb_Chr09g0335071 Lupinus albus HOM05D002799 ORTHO05D008889 1.6e-50 203.4 179 56.4
CsaV3_5G005340 Cucumis sativus L. HOM05D002799 ORTHO05D008889 5.9e-50 201.4 172 59.9
MSTRG.17884 Avicennia marina HOM05D002799 ORTHO05D008889 1.7e-49 199.9 175 57.7
Glyma.18G134600 Glycine max HOM05D002799 ORTHO05D008889 1.7e-49 199.9 177 53.7
EL10Ac3g05099 Beta vulgaris HOM05D002799 ORTHO05D008889 2.3e-49 199.5 171 57.9
Ah.04g157280 Amaranthus hybridus HOM05D002799 ORTHO05D008889 5.0e-49 198.4 171 59.1
AUR62028150 Chenopodium quinoa HOM05D002799 ORTHO05D008889 1.1e-48 197.2 171 59.1
SGA_v2.0_scaffold70G23573 Striga asiatica HOM05D002799 ORTHO05D008889 1.5e-48 196.8 171 58.5
Glyma.08G289900 Glycine max HOM05D002799 ORTHO05D008889 3.3e-48 195.7 177 54.2
Phvul.003G054200 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 4.3e-48 195.3 178 52.8
CANSAT21G1155 Cannabis sativa HOM05D002799 ORTHO05D008889 5.6e-48 194.9 170 54.7
Nn3g19277 Nelumbo nucifera HOM05D002799 ORTHO05D008889 5.6e-48 194.9 157 60.5
vmacro06499 Vaccinium macrocarpon HOM05D002799 ORTHO05D008889 5.6e-48 194.9 159 59.1
VMungo0251G2787 Vigna mungo HOM05D002799 ORTHO05D008889 7.3e-48 194.5 175 54.3
Os06g0114650 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D008889 8.0e-47 191.0 187 50.3
Phvul.003G053900 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 8.0e-47 191.0 178 52.2
Oeu053393.1 Olea europaea HOM05D002799 ORTHO05D008889 2.3e-46 189.5 156 59.0
Duzib133G0126 Durio zibethinus HOM05D002799 ORTHO05D008889 3.1e-46 189.1 161 57.8
Solyc10g006600.4 Solanum lycopersicum HOM05D002799 ORTHO05D008889 5.2e-46 188.3 142 64.8
Peaxi162Scf00257g00081 Petunia axillaris HOM05D002799 ORTHO05D008889 6.8e-46 188.0 156 59.6
unitig_746.g26651 Utricularia gibba HOM05D002799 ORTHO05D008889 3.4e-45 185.7 180 52.2
Lsat_1_v5_gn_5_146100 Lactuca sativa HOM05D002799 ORTHO05D008889 2.2e-44 183.0 174 52.3
Lsat_1_v5_gn_8_74380 Lactuca sativa HOM05D002799 ORTHO05D008889 3.7e-44 182.2 176 51.1
Lj1P1032T28 Lonicera japonica HOM05D002799 ORTHO05D008889 1.2e-42 177.2 154 55.2
Lj4g0019925 Lotus japonicus HOM05D002799 ORTHO05D008889 1.2e-42 177.2 160 53.1
Mapoly0046s0106 Marchantia polymorpha HOM05D002799 ORTHO05D008889 2.1e-39 166.4 186 47.3
PSO717G0064 Papaver somniferum HOM05D002799 ORTHO05D008889 2.8e-39 166.0 191 48.2
ATR0829G224 Amborella trichopoda HOM05D002799 ORTHO05D008889 6.2e-39 164.9 190 44.7
PSO675G5486 Papaver somniferum HOM05D002799 ORTHO05D008889 6.2e-39 164.9 191 46.6
ClCG01G005050 Citrullus lanatus HOM05D002799 ORTHO05D008889 1.2e-37 160.6 133 59.4
BcaB03g16409 Brassica carinata HOM05D002799 ORTHO05D008889 5.8e-37 158.3 109 78.0
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis HOM05D002799 ORTHO05D008889 7.5e-37 157.9 189 43.9
Aqoxy7G00884 Aquilegia oxysepala HOM05D002799 ORTHO05D008889 1.3e-36 157.1 138 56.5
PGR004G1571 Punica granatum HOM05D002799 ORTHO05D008889 1.7e-36 156.8 130 56.9
COL.COLO4_19775 Corchorus olitorius HOM05D002799 ORTHO05D008889 2.4e-35 152.9 128 58.6
Ca_14681_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 5.4e-35 151.8 131 55.7
Pp3c5_2750 Physcomitrium patens HOM05D002799 ORTHO05D008889 1.6e-34 150.2 195 41.0
Sc19g0000240 Simmondsia chinensis HOM05D002799 ORTHO05D008889 2.1e-34 149.8 138 55.1
SMO174G0264 Selaginella moellendorffii HOM05D002799 ORTHO05D008889 1.3e-33 147.1 171 45.0
Psat4g127040 Pisum sativum HOM05D002799 ORTHO05D008889 5.6e-32 141.7 131 52.7
C07p06790 Brassica napus HOM05D002799 ORTHO05D008889 9.5e-32 141.0 132 59.1
TPR.G26908 Trifolium pratense HOM05D002799 ORTHO05D008889 3.6e-31 139.0 132 52.3
MD01G1233600 Malus domestica HOM05D002799 ORTHO05D008889 6.8e-30 134.8 98 62.2
Rhsim03G0164800 Rhododendron simsii HOM05D002799 ORTHO05D008889 4.1e-27 125.6 104 59.6
HPP92_002455 Vanilla planifolia HOM05D002799 ORTHO05D008889 5.1e-25 118.6 177 39.0
SHI03438 Sapria himalayana HOM05D002799 ORTHO05D008889 6.6e-25 118.2 139 48.2
Cre08.g385750 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D008889 9.0e-22 107.8 165 37.6
PSO675G4133 Papaver somniferum HOM05D002799 ORTHO05D008889 2.2e-20 103.2 152 40.1
PRCOL_00003203 Prasinoderma coloniale HOM05D002799 ORTHO05D008889 6.6e-17 91.7 147 40.1
Cfa026682 Carpinus fangiana HOM05D002799 ORTHO05D008889 8.1e-15 84.7 152 34.2
MCO08G110 Micromonas commoda HOM05D002799 ORTHO05D008889 6.9e-14 81.6 157 33.1
Ca_28676_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 6.4e-12 75.1 171 29.8
HanXRQChr10g0305151 Helianthus annuus HOM05D002799 ORTHO05D008889 1.5e-08 63.9 48 56.2
Zm00001eb177740 Zea mays HOM05D002799 ORTHO05D008889 1.8e-06 57.0 74 41.9


User provided reference genes

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