Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 3.9e-243 844.3 424 100.0
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 1.4e-91 340.9 181 93.4
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 5.4e-83 312.4 157 98.1
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 5.1e-81 305.8 194 81.4
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 6.2e-55 219.2 206 61.2
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 6.2e-55 219.2 206 61.2
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 1.8e-54 217.6 198 62.6
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 4.0e-54 216.5 206 60.2
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 6.9e-54 215.7 206 59.7
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 2.0e-53 214.2 206 59.7
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 8.4e-52 208.8 199 59.8
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.0e-49 201.8 206 54.9
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.3e-49 201.4 206 54.4
BcaC04g23020 Brassica carinata HOM05D027413 ORTHO05D024151 4.8e-47 193.0 99 100.0
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 4.0e-46 189.9 205 52.7
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 6.9e-46 189.1 206 52.9
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 7.6e-45 185.7 206 51.0
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 1.7e-44 184.5 204 51.0
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 2.9e-44 183.7 203 52.2
A09p10980 Brassica napus HOM05D027413 ORTHO05D024151 1.8e-41 174.5 103 87.4
BraA09t36738Z Brassica rapa HOM05D027413 ORTHO05D024151 1.8e-41 174.5 103 87.4
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 5.8e-37 159.5 180 48.9
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 4.9e-36 156.4 246 40.2
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 8.4e-36 155.6 193 46.1
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 8.4e-36 155.6 180 47.2
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 8.4e-36 155.6 181 47.0
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 1.9e-35 154.5 180 46.7
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 2.5e-35 154.1 180 48.3
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 5.5e-35 152.9 182 45.1
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 9.3e-35 152.1 180 46.1
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 9.3e-35 152.1 180 45.6
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 1.2e-34 151.8 207 42.0
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.2e-34 151.8 172 50.0
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 2.7e-34 150.6 175 45.7
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 3.5e-34 150.2 204 41.7
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 6.1e-34 149.4 175 46.9
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 6.1e-34 149.4 180 45.0
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 7.9e-34 149.1 180 45.6
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 1.3e-33 148.3 78 91.0
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 1.3e-33 148.3 180 46.1
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 1.8e-33 147.9 196 43.9
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 1.8e-33 147.9 180 45.6
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 2.3e-33 147.5 180 45.6
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 2.3e-33 147.5 181 44.2
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 2.3e-33 147.5 180 45.6
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 3.0e-33 147.1 175 45.7
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 5.1e-33 146.4 175 44.6
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 8.7e-33 145.6 175 45.1
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 8.7e-33 145.6 175 45.7
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 1.1e-32 145.2 180 44.4
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 1.9e-32 144.4 175 44.6
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 1.9e-32 144.4 180 43.9
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 2.5e-32 144.1 175 44.6
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 3.3e-32 143.7 211 39.3
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 3.3e-32 143.7 175 44.0
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 5.7e-32 142.9 179 42.5
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 9.7e-32 142.1 180 43.9
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 9.7e-32 142.1 183 44.3
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 1.6e-31 141.4 197 41.1
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 1.6e-31 141.4 191 41.9
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 2.8e-31 140.6 175 44.6
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 3.7e-31 140.2 180 42.8
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 3.7e-31 140.2 179 43.6
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 4.8e-31 139.8 173 48.0
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 4.8e-31 139.8 173 48.0
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 4.8e-31 139.8 173 48.0
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 4.8e-31 139.8 180 43.9
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 6.3e-31 139.4 180 43.9
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 6.3e-31 139.4 198 42.4
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 8.2e-31 139.0 180 43.9
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 8.2e-31 139.0 181 47.0
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 8.2e-31 139.0 180 43.9
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 1.4e-30 138.3 208 39.9
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 1.8e-30 137.9 181 43.6
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 2.4e-30 137.5 180 44.4
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 2.4e-30 137.5 188 42.6
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 3.1e-30 137.1 204 39.7
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 4.1e-30 136.7 196 40.3
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 5.3e-30 136.3 163 46.0
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 6.9e-30 136.0 180 42.2
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 9.0e-30 135.6 207 38.2
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 1.2e-29 135.2 170 44.7
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 2.6e-29 134.0 73 90.4
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 7.7e-29 132.5 180 41.1
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 1.0e-28 132.1 173 46.8
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 1.0e-28 132.1 173 46.8
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 5.0e-28 129.8 177 40.7
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 1.1e-27 128.6 190 39.5
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.1e-27 128.6 175 42.3
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 1.4e-27 128.3 175 41.1
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.4e-27 128.3 180 40.6
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 1.9e-27 127.9 172 41.3
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 3.2e-27 127.1 220 37.7
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 4.2e-27 126.7 175 41.7
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 4.2e-27 126.7 180 40.0
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 5.5e-27 126.3 181 40.3
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 5.5e-27 126.3 172 41.3
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 5.5e-27 126.3 180 40.6
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 7.2e-27 125.9 175 41.1
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 1.2e-26 125.2 181 39.8
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 1.2e-26 125.2 181 39.8
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 1.6e-26 124.8 180 40.0
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 2.7e-26 124.0 180 38.9
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 2.7e-26 124.0 180 39.4
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 2.7e-26 124.0 181 39.8
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 3.6e-26 123.6 180 39.4
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 3.6e-26 123.6 180 39.4
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 3.6e-26 123.6 180 39.4
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 4.6e-26 123.2 180 39.4
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 6.1e-26 122.9 180 39.4
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 6.1e-26 122.9 180 39.4
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 6.1e-26 122.9 180 39.4
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 1.4e-25 121.7 191 38.7
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 1.8e-25 121.3 180 38.9
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 1.8e-25 121.3 150 46.7
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 1.8e-25 121.3 182 39.0
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 2.3e-25 120.9 182 39.0
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 2.3e-25 120.9 180 38.9
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 2.3e-25 120.9 155 42.6
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 5.1e-25 119.8 180 38.3
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 5.1e-25 119.8 175 38.9
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.0e-24 117.9 180 38.9
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.3e-24 117.1 180 37.2
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 5.7e-24 116.3 175 38.3
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 7.4e-24 115.9 153 43.8
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 7.4e-24 115.9 179 36.3
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 2.8e-23 114.0 180 36.1
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 2.8e-23 114.0 180 36.7
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 4.5e-21 106.7 175 37.1
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 7.7e-21 105.9 189 36.0
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 1.0e-20 105.5 180 36.7
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 1.3e-20 105.1 145 42.8
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.3e-20 105.1 73 65.8
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 2.9e-20 104.0 151 39.7
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 5.0e-20 103.2 139 41.0
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 6.5e-20 102.8 181 35.9
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 8.5e-20 102.4 173 38.2
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 1.1e-19 102.1 207 35.7
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 1.9e-19 101.3 138 38.4
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 4.2e-19 100.1 166 38.0
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 7.2e-19 99.4 189 34.4
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 7.2e-19 99.4 107 57.0
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 7.2e-19 99.4 107 57.0
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 1.6e-18 98.2 136 42.6
C08p38820 Brassica napus HOM05D000481 ORTHO05D000471 7.9e-18 95.9 94 57.4
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 1.8e-17 94.7 133 39.1
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 1.8e-17 94.7 45 97.8
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 5.1e-17 93.2 156 36.5
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 3.3e-16 90.5 165 32.7
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 5.7e-16 89.7 134 39.6
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 4.8e-15 86.7 59 66.1
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 2.0e-13 81.3 157 34.4
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 2.6e-13 80.9 67 52.2
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 3.5e-13 80.5 146 39.7
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 3.5e-13 80.5 160 31.9
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 1.0e-12 79.0 116 41.4
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 2.2e-12 77.8 150 33.3
C04p03650 Brassica napus HOM05D062509 ORTHO05D096760 8.0e-10 69.3 49 77.6
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 2.3e-09 67.8 124 35.5
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 6.7e-09 66.2 128 34.4
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 1.1e-08 65.5 115 34.8
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 5.7e-08 63.2 94 40.4
BcaC02g09123 Brassica carinata HOM05D000055 ORTHO05D001675 9.7e-08 62.4 51 68.6
C04p38670 Brassica napus HOM05D000055 ORTHO05D001675 9.7e-08 62.4 51 68.6
BolC4t25445H Brassica oleracea HOM05D000055 ORTHO05D001675 9.7e-08 62.4 51 68.6
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 1.3e-07 62.0 59 50.8
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 1.7e-07 61.6 86 43.0
BcaB02g08501 Brassica carinata HOM05D000055 ORTHO05D001675 2.2e-07 61.2 51 66.7
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 3.7e-07 60.5 59 50.8
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 4.8e-07 60.1 48 47.9
Thhalv10010160m.g Eutrema salsugineum HOM05D000055 ORTHO05D001675 1.1e-06 58.9 51 64.7
A04p05830 Brassica napus HOM05D000055 ORTHO05D001675 1.4e-06 58.5 51 64.7
Sp5g08470 Schrenkiella parvula HOM05D000055 ORTHO05D001675 1.4e-06 58.5 51 64.7
AL5G34910 Arabidopsis lyrata HOM05D000055 ORTHO05D001675 1.8e-06 58.2 51 64.7
AT3G53930 Arabidopsis thaliana HOM05D000055 ORTHO05D001675 1.8e-06 58.2 51 64.7
BraA04t16280Z Brassica rapa HOM05D000055 ORTHO05D001675 1.8e-06 58.2 51 64.7
Carub.0005s2050 Capsella rubella HOM05D000055 ORTHO05D001675 1.8e-06 58.2 51 64.7


User provided reference genes

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