Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 1.5e-153 546.2 293 100.0
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 1.1e-151 540.0 293 99.0
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 1.6e-147 526.2 293 97.3
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 2.8e-147 525.4 293 95.9
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 5.0e-136 488.0 293 90.1
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 4.3e-132 474.9 255 98.8
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 4.1e-130 468.4 357 76.8
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 5.3e-130 468.0 293 86.7
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 7.7e-129 464.2 293 87.0
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 1.0e-128 463.8 293 86.7
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 1.7e-128 463.0 292 86.3
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 1.2e-126 456.8 290 86.9
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 1.2e-126 456.8 290 86.9
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 4.7e-126 454.9 285 86.3
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 2.3e-125 452.6 285 86.3
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 3.3e-124 448.7 298 82.6
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 4.8e-123 444.9 298 82.6
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 9.1e-122 440.7 297 82.2
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 5.5e-119 431.4 294 81.6
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 8.0e-118 427.6 296 81.4
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 4.5e-105 385.2 297 74.7
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 1.2e-89 334.0 193 94.8
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 5.9e-89 331.6 285 69.5
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 6.6e-88 328.2 292 68.8
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 2.3e-85 319.7 256 71.1
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 3.1e-85 319.3 297 64.6
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 3.1e-85 319.3 295 64.4
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 6.8e-85 318.2 215 78.6
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 1.5e-84 317.0 242 74.8
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 1.5e-84 317.0 297 63.3
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 2.0e-84 316.6 299 63.2
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 3.4e-84 315.8 290 64.8
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 5.8e-84 315.1 290 64.8
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 7.5e-84 314.7 274 66.4
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 1.3e-83 313.9 261 70.9
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 1.3e-83 313.9 272 68.4
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.3e-83 313.9 290 64.5
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.3e-83 313.9 293 61.8
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 1.7e-83 313.5 280 65.4
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 2.9e-83 312.8 293 64.5
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 2.9e-83 312.8 295 63.4
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 3.7e-83 312.4 242 74.0
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 6.4e-83 311.6 270 66.3
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 6.4e-83 311.6 275 65.5
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 8.3e-83 311.2 293 64.5
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 1.1e-82 310.8 215 76.3
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 1.1e-82 310.8 292 61.6
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.9e-82 310.1 300 62.7
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 2.4e-82 309.7 264 68.6
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 2.4e-82 309.7 264 69.3
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 3.2e-82 309.3 279 63.8
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 3.2e-82 309.3 218 76.6
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 3.2e-82 309.3 282 64.2
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 3.2e-82 309.3 215 76.3
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 4.1e-82 308.9 277 66.1
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 5.4e-82 308.5 290 62.4
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 5.4e-82 308.5 303 62.0
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 5.4e-82 308.5 297 62.3
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 7.0e-82 308.1 280 63.6
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 7.0e-82 308.1 283 65.4
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 7.0e-82 308.1 280 64.3
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 7.0e-82 308.1 251 68.1
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 7.0e-82 308.1 231 73.2
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 9.2e-82 307.8 226 74.3
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 9.2e-82 307.8 297 65.0
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 9.2e-82 307.8 281 63.7
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 1.2e-81 307.4 291 61.5
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 1.2e-81 307.4 282 65.2
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.6e-81 307.0 282 64.5
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.6e-81 307.0 241 72.2
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 2.0e-81 306.6 228 72.8
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 2.7e-81 306.2 257 66.5
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 4.6e-81 305.4 280 65.7
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 4.6e-81 305.4 289 63.7
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 4.6e-81 305.4 268 67.2
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 4.6e-81 305.4 207 80.2
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 4.6e-81 305.4 225 75.1
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 6.0e-81 305.1 247 69.6
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 6.0e-81 305.1 287 64.5
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 6.0e-81 305.1 301 64.5
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 7.8e-81 304.7 218 76.6
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.7e-80 303.5 291 62.5
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 1.7e-80 303.5 257 66.9
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 1.7e-80 303.5 273 66.7
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.7e-80 303.5 291 61.5
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.7e-80 303.5 284 63.0
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.7e-80 303.5 300 63.3
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 3.9e-80 302.4 255 65.5
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 5.0e-80 302.0 224 74.1
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 8.6e-80 301.2 265 64.9
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 8.6e-80 301.2 297 63.0
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 1.1e-79 300.8 295 62.4
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 1.1e-79 300.8 277 62.5
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 1.1e-79 300.8 299 61.5
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 1.1e-79 300.8 286 60.1
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 1.9e-79 300.1 284 62.7
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.9e-79 300.1 299 62.9
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 5.6e-79 298.5 279 61.3
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 9.5e-79 297.7 299 61.9
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 9.5e-79 297.7 217 76.0
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 3.6e-78 295.8 249 68.7
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 4.7e-78 295.4 243 69.1
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 6.2e-78 295.0 218 74.3
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 3.1e-77 292.7 255 66.3
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 4.0e-77 292.4 198 78.3
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 5.2e-77 292.0 217 73.3
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 6.8e-77 291.6 260 65.4
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 6.8e-77 291.6 195 79.0
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 8.9e-77 291.2 264 61.7
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 8.9e-77 291.2 267 64.4
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 1.5e-76 290.4 245 68.6
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 1.5e-76 290.4 281 61.9
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 2.0e-76 290.0 276 63.4
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 2.6e-76 289.7 287 61.7
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 5.8e-76 288.5 275 62.9
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 2.9e-75 286.2 210 74.8
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 3.7e-75 285.8 294 58.5
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 3.7e-75 285.8 217 72.8
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 2.4e-74 283.1 192 78.6
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 7.0e-74 281.6 352 52.3
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 9.2e-74 281.2 282 61.0
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 1.2e-73 280.8 245 67.3
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 2.7e-73 279.6 255 64.3
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 1.1e-71 274.2 276 58.7
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 1.9e-71 273.5 208 70.7
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 1.6e-70 270.4 208 67.8
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 8.1e-70 268.1 260 61.2
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 8.1e-70 268.1 358 50.3
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 2.6e-68 263.1 200 69.5
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 1.1e-66 257.7 184 73.4
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 1.9e-66 256.9 275 55.6
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 3.2e-66 256.1 216 64.4
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.1e-65 253.4 251 60.2
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 3.5e-65 252.7 248 59.3
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 6.0e-65 251.9 275 55.6
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 1.0e-64 251.1 275 54.9
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 1.3e-64 250.8 270 56.3
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 8.6e-64 248.1 371 48.0
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.5e-63 246.5 267 54.3
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 4.7e-62 242.3 209 61.7
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 8.1e-62 241.5 182 71.4
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.1e-61 241.1 254 56.3
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 1.3e-59 234.2 207 62.8
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 6.4e-59 231.9 192 66.7
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 1.8e-53 213.8 181 61.9
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 5.8e-52 208.8 206 57.8
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 3.4e-44 183.0 194 58.2
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 1.1e-42 177.9 183 55.2
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 3.0e-40 169.9 168 58.3
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 7.6e-36 155.2 107 78.5
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 8.4e-35 151.8 251 42.2
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 1.6e-30 137.5 192 43.2
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 4.8e-30 136.0 102 70.6
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 2.4e-29 133.7 250 37.2
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 2.0e-28 130.6 89 75.3
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 2.5e-26 123.6 205 40.0
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 3.9e-24 116.3 164 51.8
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 2.6e-20 103.6 78 74.4
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 5.5e-18 95.9 87 58.6
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 3.9e-16 89.7 63 76.2
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 1.1e-15 88.2 63 74.6
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 6.9e-13 79.0 169 36.1
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 3.2e-10 70.1 42 81.0
VMungo0251G3374 Vigna mungo HOM05D004451 ORTHO05D005177 5.7e-07 59.3 59 52.5


User provided reference genes

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