Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 5.7e-200 700.7 343 100.0
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 1.7e-196 689.1 343 98.5
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 6.7e-193 677.2 343 97.1
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 4.4e-192 674.5 335 98.2
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 3.8e-188 661.4 335 96.7
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 6.5e-188 660.6 335 96.7
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 4.2e-187 657.9 342 93.3
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 4.0e-185 651.4 343 91.8
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 1.8e-182 642.5 344 91.0
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 3.1e-182 641.7 344 91.0
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 4.5e-181 637.9 344 89.8
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 5.0e-180 634.4 344 90.1
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 4.0e-177 624.8 343 89.2
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 4.0e-177 624.8 343 89.2
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 6.8e-177 624.0 343 89.5
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 1.2e-176 623.2 343 89.5
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 1.5e-171 606.3 343 87.8
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 1.6e-170 602.8 335 89.6
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 3.4e-160 568.5 343 83.1
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 4.9e-159 564.7 322 87.6
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 7.8e-157 557.4 343 80.8
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.3e-156 556.6 351 80.1
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.2e-154 550.1 353 78.5
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 9.2e-142 507.3 344 73.5
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 3.5e-141 505.4 345 74.5
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 2.5e-139 499.2 352 71.6
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 5.6e-139 498.0 351 70.7
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 4.7e-138 495.0 344 71.8
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 8.1e-138 494.2 342 72.8
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 1.4e-137 493.4 344 71.5
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 2.4e-137 492.7 347 71.5
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.5e-136 490.0 358 71.2
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 4.4e-136 488.4 344 72.1
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 9.9e-136 487.3 351 70.9
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 9.9e-136 487.3 357 71.1
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 2.2e-135 486.1 342 71.6
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 3.8e-135 485.3 357 69.5
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 3.8e-135 485.3 342 71.6
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 4.9e-135 485.0 343 72.3
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 6.4e-135 484.6 357 70.6
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 6.4e-135 484.6 354 68.9
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 8.4e-135 484.2 344 71.5
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 8.4e-135 484.2 344 71.5
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.4e-134 483.4 345 71.3
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 4.2e-134 481.9 354 69.2
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 5.4e-134 481.5 349 69.9
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 7.1e-134 481.1 349 69.9
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 7.1e-134 481.1 336 72.3
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 1.2e-133 480.3 340 72.1
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 1.6e-133 479.9 355 70.4
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 4.6e-133 478.4 354 68.9
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 4.6e-133 478.4 360 68.9
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.0e-132 477.2 353 68.8
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.0e-132 477.2 353 68.8
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 3.9e-132 475.3 354 68.1
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 3.9e-132 475.3 353 68.6
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 5.1e-132 474.9 345 69.0
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 8.7e-132 474.2 354 68.4
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.5e-131 473.4 349 68.8
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.5e-131 473.4 352 68.5
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 1.9e-131 473.0 337 70.6
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 3.3e-131 472.2 343 69.4
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 7.3e-131 471.1 352 68.2
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 7.3e-131 471.1 355 66.8
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 2.8e-130 469.2 339 70.8
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 8.1e-130 467.6 354 68.1
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 8.1e-130 467.6 340 70.3
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 8.1e-130 467.6 355 68.7
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 4.0e-129 465.3 363 67.5
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 9.0e-129 464.2 349 67.3
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 9.0e-129 464.2 353 66.0
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.2e-128 463.8 351 67.8
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 1.5e-128 463.4 355 67.0
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 2.6e-128 462.6 351 67.8
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 2.6e-128 462.6 346 69.1
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 4.5e-128 461.8 342 68.1
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 1.3e-127 460.3 353 67.4
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.2e-127 459.5 346 67.6
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 2.9e-127 459.1 347 67.4
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 2.9e-127 459.1 342 68.4
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 4.9e-127 458.4 374 62.6
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 4.9e-127 458.4 372 64.5
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 3.2e-126 455.7 371 64.4
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.2e-126 455.3 345 67.0
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 7.1e-126 454.5 372 64.8
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 9.3e-126 454.1 352 65.9
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.6e-125 453.4 349 66.8
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 6.0e-125 451.4 352 66.5
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 6.0e-125 451.4 345 66.7
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 7.9e-125 451.1 359 64.9
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 6.7e-124 448.0 350 65.7
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 1.6e-122 443.4 347 65.4
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 6.2e-122 441.4 366 64.8
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 8.1e-122 441.0 353 65.2
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 4.0e-121 438.7 376 62.0
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 6.9e-121 438.0 337 67.7
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 6.9e-121 438.0 343 64.7
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 6.9e-121 438.0 353 63.5
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 2.0e-120 436.4 354 64.7
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 2.0e-120 436.4 353 63.2
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 2.6e-120 436.0 353 63.5
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 5.8e-120 434.9 347 64.8
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 9.9e-120 434.1 344 64.0
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 1.1e-118 430.6 344 63.7
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 7.1e-118 427.9 366 62.3
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 3.0e-116 422.5 349 64.5
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 1.5e-115 420.2 352 62.2
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 3.3e-115 419.1 344 64.0
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 5.6e-115 418.3 375 58.9
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 8.2e-114 414.5 373 60.1
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 1.1e-113 414.1 343 62.7
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.8e-113 413.3 346 64.5
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 4.0e-113 412.1 323 64.4
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 6.5e-111 404.8 350 61.1
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.6e-109 400.2 324 65.4
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.8e-108 396.7 372 59.7
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 3.0e-108 396.0 358 57.8
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 6.7e-108 394.8 329 64.1
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 6.7e-108 394.8 365 56.7
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 3.3e-107 392.5 354 59.6
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 9.7e-107 391.0 308 64.9
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 6.3e-106 388.3 419 52.7
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 5.3e-105 385.2 525 45.3
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 2.0e-104 383.3 355 58.0
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 3.8e-103 379.0 338 58.6
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 7.9e-101 371.3 333 59.2
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 1.1e-99 367.5 358 55.6
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.7e-95 353.6 326 58.6
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.7e-95 353.6 430 49.1
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 6.1e-93 345.1 362 52.2
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 6.7e-92 341.7 412 48.8
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 1.4e-89 334.0 163 93.3
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.2e-88 330.9 369 52.0
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.5e-86 323.2 316 56.6
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 9.7e-83 311.2 342 52.0
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 2.2e-79 300.1 377 46.2
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 2.9e-79 299.7 377 45.9
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.0e-75 287.0 232 61.2
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 9.4e-70 268.1 237 61.2
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 9.4e-70 268.1 237 61.2
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 5.2e-68 262.3 225 67.1
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 2.8e-66 256.5 307 51.8
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 4.8e-66 255.8 361 43.2
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.6e-64 250.8 368 42.4
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 2.8e-61 240.0 237 50.2
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 4.0e-60 236.1 347 42.7
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.6e-59 233.4 213 62.9
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 1.4e-57 227.6 396 39.4
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 6.6e-55 218.8 189 61.4
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 3.3e-54 216.5 213 58.7
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 9.5e-46 188.3 173 61.8
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 4.0e-44 183.0 136 72.8
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 6.6e-39 165.6 133 57.9
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 4.9e-34 149.4 360 33.1
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 4.1e-33 146.4 71 87.3
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 5.4e-33 146.0 338 33.4
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 9.6e-30 135.2 121 57.0
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 8.9e-28 128.6 104 59.6
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 1.0e-15 88.6 84 58.3
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 6.2e-13 79.3 63 63.5
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 2.7e-08 63.9 33 78.8


User provided reference genes

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