Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 3.3e-209 731.5 381 100.0
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 1.7e-205 719.2 382 98.7
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 1.5e-204 716.1 382 98.4
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 1.9e-196 689.1 388 93.3
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 1.2e-190 669.8 394 92.6
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 9.5e-164 580.5 401 81.3
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 4.6e-150 535.0 396 74.2
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 1.6e-147 526.6 398 74.4
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 6.2e-147 524.6 398 74.1
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 1.8e-146 523.1 401 74.8
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 1.9e-143 513.1 399 72.2
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.9e-143 513.1 393 73.8
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 5.3e-138 495.0 387 70.5
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 2.2e-128 463.0 376 66.5
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 2.4e-114 416.4 382 59.9
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 9.1e-114 414.5 398 58.8
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 1.7e-112 410.2 409 57.9
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.7e-112 410.2 259 79.9
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 1.9e-111 406.8 410 56.6
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 1.9e-111 406.8 389 58.4
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.5e-111 406.4 391 57.8
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 9.4e-111 404.4 401 56.4
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.6e-110 403.7 398 55.0
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 4.7e-110 402.1 396 54.8
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 5.1e-109 398.7 384 56.5
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 2.6e-108 396.4 391 55.8
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 3.3e-108 396.0 399 54.4
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 4.4e-108 395.6 381 56.4
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 7.4e-108 394.8 385 55.6
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 9.7e-108 394.4 396 54.5
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 1.7e-107 393.7 387 55.0
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 2.2e-107 393.3 393 55.2
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 3.7e-107 392.5 395 55.7
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 3.7e-107 392.5 393 56.0
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 3.7e-107 392.5 395 55.4
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 4.8e-107 392.1 395 54.9
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 6.3e-107 391.7 411 54.5
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 6.3e-107 391.7 392 56.4
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 8.2e-107 391.3 388 56.2
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 8.2e-107 391.3 411 54.5
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 1.4e-106 390.6 418 53.6
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 2.4e-106 389.8 381 55.4
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 4.1e-106 389.0 401 55.6
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 5.3e-106 388.7 401 55.6
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 5.3e-106 388.7 391 55.0
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 7.0e-106 388.3 414 53.6
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 9.1e-106 387.9 402 55.5
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 9.1e-106 387.9 411 53.8
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 9.1e-106 387.9 411 53.8
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 1.5e-105 387.1 384 54.7
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 2.0e-105 386.7 412 52.2
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 2.0e-105 386.7 417 54.4
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 2.6e-105 386.3 406 55.4
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.6e-105 386.3 411 54.3
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.6e-105 386.3 411 54.0
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 2.6e-105 386.3 389 54.0
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 3.5e-105 386.0 392 55.1
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.0e-104 384.4 392 55.4
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 1.0e-104 384.4 387 56.3
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 1.0e-104 384.4 392 56.1
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 1.7e-104 383.6 392 54.1
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 2.9e-104 382.9 380 56.3
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 2.9e-104 382.9 390 55.4
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 5.0e-104 382.1 381 55.9
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 5.0e-104 382.1 388 56.4
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 6.5e-104 381.7 380 55.8
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 8.5e-104 381.3 393 55.7
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 1.1e-103 380.9 388 54.9
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 1.4e-103 380.6 391 55.0
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 1.4e-103 380.6 394 55.1
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 1.4e-103 380.6 392 53.6
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 2.5e-103 379.8 368 55.7
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 2.5e-103 379.8 384 55.5
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 9.4e-103 377.9 384 55.5
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 2.7e-102 376.3 381 55.4
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 4.7e-102 375.6 385 53.2
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 3.0e-101 372.9 388 53.4
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 3.9e-101 372.5 424 52.1
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 3.9e-101 372.5 400 53.5
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 6.7e-101 371.7 388 54.6
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 2.6e-100 369.8 378 55.3
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 5.7e-100 368.6 405 53.6
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 2.2e-99 366.7 389 53.5
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.1e-98 364.4 400 53.2
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 2.4e-98 363.2 405 52.3
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.4e-98 363.2 405 53.1
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.1e-98 362.8 412 51.2
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 2.0e-97 360.1 449 50.6
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 5.9e-97 358.6 371 53.6
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 7.7e-97 358.2 408 51.0
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 1.7e-96 357.1 386 52.8
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.7e-96 357.1 423 49.6
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 4.0e-93 345.9 444 48.0
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 4.0e-93 345.9 405 47.7
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 9.7e-92 341.3 388 50.8
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 3.7e-91 339.3 370 54.1
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 8.3e-91 338.2 392 50.3
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 9.1e-90 334.7 397 49.9
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.0e-88 331.3 385 49.4
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 6.1e-86 322.0 319 55.2
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 1.0e-85 321.2 411 47.2
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 1.8e-85 320.5 420 46.0
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 3.5e-81 306.2 404 46.0
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 5.5e-79 298.9 279 56.3
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 1.6e-78 297.4 463 41.3
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 1.2e-76 291.2 392 45.4
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 3.4e-76 289.7 447 40.5
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 3.2e-74 283.1 254 58.3
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 1.0e-72 278.1 342 48.0
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 9.5e-71 271.6 407 39.1
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 3.4e-68 263.1 424 39.4
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 6.0e-65 252.3 380 43.9
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 4.3e-63 246.1 370 41.9
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 1.6e-62 244.2 396 42.7
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 1.4e-61 241.1 234 56.4
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 6.8e-61 238.8 355 44.2
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 6.8e-61 238.8 380 38.4
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.5e-60 237.7 399 39.1
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 8.3e-59 231.9 446 35.2
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 3.2e-58 229.9 446 35.2
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 2.3e-53 213.8 200 56.5
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 1.2e-49 201.4 309 44.7
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 1.6e-46 191.0 167 56.9
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 2.2e-43 180.6 169 56.2
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 6.4e-43 179.1 198 45.5
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 2.9e-35 153.7 153 51.6
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 4.9e-35 152.9 177 48.0
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.4e-34 151.4 172 48.3
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 2.7e-33 147.1 251 35.9
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 7.9e-33 145.6 162 46.9
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 1.4e-29 134.8 111 60.4
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 3.0e-24 117.1 173 48.6
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 6.9e-21 105.9 190 40.5
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 4.9e-19 99.8 85 57.6
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 1.0e-16 92.0 138 37.7
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.8e-14 84.0 55 80.0
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 8.2e-14 82.4 113 44.2
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 1.5e-12 78.2 87 51.7
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 2.0e-12 77.8 87 50.6
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 6.5e-11 72.8 61 62.3
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 6.5e-11 72.8 61 62.3
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 2.7e-09 67.4 380 23.2
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 1.9e-07 61.2 79 49.4
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 1.9e-07 61.2 79 49.4
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 2.2e-06 57.8 68 45.6


User provided reference genes

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