Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 4.9e-123 444.5 229 100.0
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 6.2e-118 427.6 222 98.6
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 3.2e-98 362.1 191 100.0
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 4.6e-97 358.2 188 100.0
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 1.4e-90 336.7 177 99.4
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 2.0e-87 326.2 197 90.4
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 9.1e-85 317.4 190 87.9
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 1.3e-83 313.5 178 91.0
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 1.3e-83 313.5 178 91.0
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 1.3e-83 313.5 178 91.0
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 2.9e-83 312.4 191 86.4
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 2.7e-81 305.8 193 83.9
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 5.7e-79 298.1 190 85.8
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 7.4e-79 297.7 189 85.7
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 1.3e-78 297.0 188 85.6
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 7.7e-76 287.7 179 86.6
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 2.7e-73 279.3 178 84.3
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 3.5e-68 262.3 190 77.4
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 1.5e-66 256.9 174 77.6
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 4.7e-65 251.9 160 86.2
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 1.6e-60 236.9 195 67.2
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 5.9e-60 235.0 187 67.4
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 5.9e-60 235.0 195 66.7
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 1.7e-59 233.4 173 69.4
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 1.1e-58 230.7 193 65.8
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 2.5e-58 229.6 169 71.0
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 4.2e-58 228.8 189 65.1
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 1.2e-57 227.3 187 66.3
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 1.2e-57 227.3 180 64.4
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.2e-57 227.3 186 64.5
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 1.6e-57 226.9 220 59.5
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 3.6e-57 225.7 190 65.8
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 4.7e-57 225.3 175 67.4
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 4.7e-57 225.3 172 67.4
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.4e-56 223.8 175 66.9
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 1.8e-56 223.4 173 67.1
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.3e-56 223.0 200 64.0
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 3.0e-56 222.6 181 66.9
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 4.0e-56 222.2 200 64.5
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 5.2e-56 221.9 175 66.9
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 5.2e-56 221.9 186 64.5
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 5.2e-56 221.9 188 63.3
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 1.5e-55 220.3 188 63.3
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 1.5e-55 220.3 182 64.8
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 2.0e-55 219.9 175 66.3
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 2.6e-55 219.5 189 61.4
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 2.6e-55 219.5 169 67.5
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 5.7e-55 218.4 173 65.3
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.3e-54 217.2 186 59.1
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.3e-54 217.2 169 66.9
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 2.2e-54 216.5 170 66.5
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 3.7e-54 215.7 182 62.1
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 4.8e-54 215.3 182 63.2
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 8.3e-54 214.5 181 65.7
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 1.1e-53 214.2 187 58.3
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 1.4e-53 213.8 166 66.3
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 1.8e-53 213.4 173 64.2
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 3.1e-53 212.6 185 58.9
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 4.1e-53 212.2 167 65.9
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 4.1e-53 212.2 195 59.5
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 5.4e-53 211.8 168 66.7
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 5.4e-53 211.8 173 64.2
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 5.4e-53 211.8 181 63.0
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 9.1e-53 211.1 189 61.4
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 1.6e-52 210.3 179 63.7
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 2.0e-52 209.9 173 64.2
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 2.0e-52 209.9 179 64.2
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 2.7e-52 209.5 174 63.2
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 3.5e-52 209.1 182 60.4
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 5.9e-52 208.4 185 60.0
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 5.9e-52 208.4 185 60.0
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 7.7e-52 208.0 182 61.0
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 7.7e-52 208.0 168 64.3
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 7.7e-52 208.0 169 63.3
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 2.9e-51 206.1 172 62.8
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 6.6e-51 204.9 187 58.3
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.9e-50 203.4 187 57.8
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 2.5e-50 203.0 173 63.6
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 3.3e-50 202.6 170 64.7
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 3.3e-50 202.6 184 58.2
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 5.5e-50 201.8 176 62.5
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 1.6e-49 200.3 192 57.8
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 3.6e-49 199.1 185 59.5
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 6.1e-49 198.4 185 60.0
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 8.0e-49 198.0 173 62.4
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 8.0e-49 198.0 179 57.0
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 1.5e-47 193.7 194 55.2
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 2.0e-47 193.4 213 51.6
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 3.4e-47 192.6 175 58.9
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 5.7e-47 191.8 190 55.3
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 7.5e-47 191.4 145 66.9
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.7e-46 190.3 145 66.9
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.1e-45 187.6 178 58.4
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 3.5e-44 182.6 175 59.4
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 5.9e-44 181.8 141 68.8
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 5.9e-44 181.8 190 52.1
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.0e-43 181.0 166 61.4
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 2.9e-43 179.5 196 52.6
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 1.9e-42 176.8 186 53.8
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 1.9e-42 176.8 172 55.8
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 1.9e-42 176.8 144 63.2
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 4.3e-42 175.6 143 62.9
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 4.3e-42 175.6 229 47.2
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 1.6e-41 173.7 117 71.8
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.6e-41 173.7 185 50.8
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 1.0e-40 171.0 115 72.2
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 1.0e-40 171.0 113 81.4
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 2.3e-40 169.9 126 65.9
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 9.8e-39 164.5 111 67.6
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 2.2e-38 163.3 140 60.0
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 6.4e-38 161.8 110 70.9
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 1.2e-36 157.5 116 64.7
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 2.3e-35 153.3 142 59.9
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 6.6e-35 151.8 122 68.0
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.1e-32 144.4 150 57.3
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 3.9e-27 125.9 101 58.4
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.9e-26 123.6 83 73.5
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.5e-26 123.2 88 70.5
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.1e-24 117.9 88 68.2
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 8.9e-24 114.8 170 40.0
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 2.0e-23 113.6 100 63.0
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 7.6e-23 111.7 147 43.5
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 7.6e-23 111.7 109 58.7
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 1.9e-21 107.1 69 75.4
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 3.5e-20 102.8 197 34.0
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 1.7e-19 100.5 139 48.2
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 1.6e-17 94.0 117 40.2
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.4e-16 90.9 85 57.6
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 1.8e-16 90.5 108 47.2
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 2.9e-14 83.2 59 62.7
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 3.8e-14 82.8 138 39.9
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 8.4e-14 81.6 83 51.8
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.1e-13 81.3 82 54.9
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 3.2e-13 79.7 134 36.6
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 4.6e-12 75.9 67 59.7


User provided reference genes

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