Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 2.0e-84 315.8 172 100.0
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 3.2e-82 308.5 172 98.3
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 3.2e-82 308.5 172 98.3
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 2.3e-80 302.4 172 97.1
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 5.6e-79 297.7 172 95.9
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 2.8e-54 215.7 172 74.4
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 3.6e-54 215.3 177 73.4
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 3.6e-54 215.3 177 73.4
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 3.6e-54 215.3 177 73.4
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 3.6e-54 215.3 176 72.7
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 1.4e-53 213.4 173 73.4
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 1.4e-53 213.4 173 73.4
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 1.4e-53 213.4 177 73.4
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 1.5e-52 209.9 177 71.8
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 1.5e-52 209.9 177 71.8
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 7.6e-52 207.6 173 71.7
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 7.6e-52 207.6 173 71.7
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 1.3e-51 206.8 173 71.7
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 2.2e-51 206.1 173 70.5
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 2.4e-50 202.6 178 73.6
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 2.4e-45 186.0 182 67.0
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 1.7e-43 179.9 178 66.3
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 2.2e-43 179.5 181 62.4
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 1.4e-34 150.2 181 57.5
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 4.5e-20 102.1 183 45.9
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 3.8e-19 99.0 104 52.9
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 3.8e-19 99.0 186 40.9
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 6.5e-19 98.2 194 40.7
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 4.2e-18 95.5 189 38.6
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 7.2e-18 94.7 139 46.8
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 7.2e-18 94.7 139 46.8
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 9.4e-18 94.4 174 41.4
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 9.4e-18 94.4 175 42.9
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 1.2e-17 94.0 192 40.6
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 1.6e-17 93.6 158 41.1
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 2.1e-17 93.2 120 50.0
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 3.6e-17 92.4 158 39.9
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 4.7e-17 92.0 146 45.2
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 4.7e-17 92.0 194 38.1
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 6.1e-17 91.7 156 42.3
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 1.0e-16 90.9 156 41.0
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 1.4e-16 90.5 195 36.4
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 1.4e-16 90.5 139 46.0
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 1.4e-16 90.5 200 38.5
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 1.8e-16 90.1 151 42.4
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 2.3e-16 89.7 140 46.4
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 3.0e-16 89.4 154 40.9
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 3.0e-16 89.4 115 47.0
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 3.0e-16 89.4 111 47.7
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 5.1e-16 88.6 151 41.7
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 5.1e-16 88.6 155 41.9
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 5.1e-16 88.6 165 41.2
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 6.7e-16 88.2 157 41.4
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 8.8e-16 87.8 152 42.8
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 1.5e-15 87.0 149 45.0
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 2.6e-15 86.3 150 44.0
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 2.6e-15 86.3 150 41.3
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 2.6e-15 86.3 157 40.8
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 3.3e-15 85.9 191 34.6
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 3.3e-15 85.9 152 42.8
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 4.4e-15 85.5 204 38.7
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 5.7e-15 85.1 120 46.7
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 9.7e-15 84.3 175 38.9
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 9.7e-15 84.3 176 38.1
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.3e-14 84.0 160 40.0
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.3e-14 84.0 150 42.7
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 1.7e-14 83.6 152 41.4
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 2.2e-14 83.2 161 37.3
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 2.2e-14 83.2 157 38.2
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 2.2e-14 83.2 114 46.5
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 2.8e-14 82.8 157 41.4
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.7e-14 82.4 157 42.0
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 4.8e-14 82.0 160 40.6
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 6.3e-14 81.6 163 41.1
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 6.3e-14 81.6 158 38.0
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 6.3e-14 81.6 157 40.1
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 6.3e-14 81.6 137 44.5
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 6.3e-14 81.6 137 44.5
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 6.3e-14 81.6 157 41.4
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 6.3e-14 81.6 160 39.4
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 6.3e-14 81.6 176 38.1
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.1e-13 80.9 140 41.4
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.1e-13 80.9 157 42.7
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 1.1e-13 80.9 101 48.5
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.4e-13 80.5 194 38.1
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 1.4e-13 80.5 121 43.8
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 1.8e-13 80.1 155 41.3
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 1.8e-13 80.1 144 40.3
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 1.8e-13 80.1 155 38.7
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.8e-13 80.1 123 43.1
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.4e-13 79.7 146 41.1
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.4e-13 79.7 140 41.4
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.4e-13 79.7 175 36.6
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 2.4e-13 79.7 128 39.8
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 2.4e-13 79.7 98 45.9
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 3.1e-13 79.3 118 44.1
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.1e-13 79.3 140 41.4
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 3.1e-13 79.3 143 40.6
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 4.1e-13 79.0 152 38.8
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 4.1e-13 79.0 146 40.4
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 4.1e-13 79.0 135 39.3
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 4.1e-13 79.0 101 48.5
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 6.9e-13 78.2 110 44.5
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 6.9e-13 78.2 113 45.1
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 6.9e-13 78.2 191 39.8
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 9.1e-13 77.8 145 40.0
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 9.1e-13 77.8 158 39.2
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 9.1e-13 77.8 129 44.2
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 9.1e-13 77.8 95 47.4
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.2e-12 77.4 148 43.2
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 1.2e-12 77.4 128 39.1
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 1.5e-12 77.0 143 40.6
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 1.5e-12 77.0 153 41.8
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 2.0e-12 76.6 144 42.4
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 2.0e-12 76.6 156 40.4
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 2.6e-12 76.3 196 36.2
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 2.6e-12 76.3 117 42.7
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 2.6e-12 76.3 166 38.0
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 2.6e-12 76.3 178 34.8
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 2.6e-12 76.3 172 33.7
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 3.4e-12 75.9 158 38.6
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 3.4e-12 75.9 157 37.6
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 3.4e-12 75.9 96 50.0
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 4.5e-12 75.5 149 42.3
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 4.5e-12 75.5 117 43.6
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 4.5e-12 75.5 144 41.0
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 5.9e-12 75.1 155 40.6
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 5.9e-12 75.1 149 38.9
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 5.9e-12 75.1 81 54.3
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 7.7e-12 74.7 121 40.5
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 1.0e-11 74.3 104 45.2
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.0e-11 74.3 156 37.8
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 1.3e-11 73.9 119 43.7
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 1.3e-11 73.9 156 37.2
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 1.7e-11 73.6 140 38.6
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 1.7e-11 73.6 154 37.0
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 5.0e-11 72.0 102 44.1
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 1.1e-10 70.9 165 33.9
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 1.9e-10 70.1 121 38.8
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 3.2e-10 69.3 113 40.7
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 3.2e-10 69.3 113 40.7
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 3.2e-10 69.3 102 44.1
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 5.5e-10 68.6 142 34.5
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 5.5e-10 68.6 95 44.2
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 7.2e-10 68.2 131 38.9
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 7.2e-10 68.2 65 60.0
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 9.4e-10 67.8 71 50.7
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 1.2e-09 67.4 131 39.7
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 2.1e-09 66.6 97 44.3
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 3.6e-09 65.9 161 36.0
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 3.6e-09 65.9 161 36.0
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 6.1e-09 65.1 95 43.2
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 6.1e-09 65.1 202 29.7
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.8e-08 63.5 141 36.2
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.3e-08 63.2 94 42.6
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 3.0e-08 62.8 97 44.3
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 3.0e-08 62.8 42 66.7
Zm00001eb264720 Zea mays HOM05D036073 ORTHO05D004462 8.8e-08 61.2 131 39.7
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.0e-07 60.1 68 47.1
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 5.7e-07 58.5 45 68.9
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 7.4e-07 58.2 126 35.7
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 2.2e-06 56.6 133 33.8
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 3.7e-06 55.8 45 60.0
HPP92_018370 Vanilla planifolia HOM05D007665 ORTHO05D008293 4.8e-06 55.5 46 58.7
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 6.3e-06 55.1 67 47.8
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 6.3e-06 55.1 45 60.0
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 8.2e-06 54.7 46 56.5


User provided reference genes

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