Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 1.1e-167 593.2 305 100.0
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 2.5e-167 592.0 305 99.7
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 9.0e-157 557.0 305 95.1
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 6.5e-147 524.2 308 89.9
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 2.7e-132 475.7 308 84.1
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 1.1e-130 470.3 277 89.9
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 1.2e-116 423.7 334 71.9
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.3e-115 420.2 346 71.4
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 1.7e-115 419.9 331 72.2
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 5.6e-114 414.8 331 71.6
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 5.2e-112 408.3 340 69.1
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 2.6e-111 406.0 331 71.3
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 2.6e-111 406.0 331 71.3
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 2.6e-111 406.0 331 71.3
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 8.9e-96 354.4 331 64.4
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 2.2e-94 349.7 329 64.7
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.5e-90 337.0 329 62.6
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 2.9e-86 322.8 343 56.6
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.4e-85 320.5 330 59.4
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 8.1e-73 278.1 342 50.9
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 4.6e-68 262.3 358 48.3
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.3e-65 254.2 314 51.0
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.8e-59 233.8 314 47.8
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 3.8e-54 216.1 351 42.2
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 4.9e-54 215.7 339 45.4
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 8.4e-54 214.9 331 45.0
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 8.7e-51 204.9 324 44.4
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 3.3e-50 203.0 317 45.7
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 3.3e-50 203.0 317 45.7
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.2e-47 194.5 261 49.4
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 1.5e-47 194.1 317 45.1
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 1.0e-46 191.4 317 45.4
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 2.5e-37 160.2 362 34.3
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 3.0e-35 153.3 318 36.8
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 5.7e-34 149.1 364 33.2
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 7.4e-34 148.7 362 31.8
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 2.2e-33 147.1 321 36.1
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 6.3e-33 145.6 365 33.7
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 6.3e-33 145.6 367 33.8
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.1e-32 144.8 360 33.1
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 1.8e-32 144.1 345 35.9
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 5.3e-32 142.5 355 32.4
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 9.1e-32 141.7 151 49.7
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.0e-31 140.6 359 33.1
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 3.4e-31 139.8 362 33.4
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 5.9e-31 139.0 364 34.3
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 3.8e-30 136.3 120 55.0
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 5.0e-30 136.0 352 33.5
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 8.5e-30 135.2 359 32.6
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 1.9e-29 134.0 357 33.1
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 2.5e-29 133.7 324 35.5
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.5e-29 133.7 305 33.1
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 2.5e-29 133.7 358 34.4
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.2e-29 133.3 353 32.9
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 3.2e-29 133.3 111 58.6
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 4.2e-29 132.9 327 32.1
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 9.4e-29 131.7 118 51.7
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 1.2e-28 131.3 375 32.5
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 1.6e-28 131.0 370 30.3
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.6e-28 131.0 320 31.2
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.6e-28 131.0 320 31.2
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 1.6e-28 131.0 116 54.3
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 3.6e-28 129.8 361 32.1
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 1.0e-27 128.3 113 57.5
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 1.0e-27 128.3 364 28.3
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 1.4e-27 127.9 334 32.3
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 2.3e-27 127.1 364 31.0
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 3.0e-27 126.7 372 33.6
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 3.9e-27 126.3 320 31.6
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 3.9e-27 126.3 352 31.2
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 3.9e-27 126.3 120 51.7
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 5.2e-27 125.9 362 32.3
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 6.7e-27 125.6 118 50.8
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 1.5e-26 124.4 354 29.9
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 4.4e-26 122.9 112 51.8
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 2.2e-25 120.6 356 31.7
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 4.8e-25 119.4 119 48.7
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 6.3e-25 119.0 112 49.1
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 6.3e-25 119.0 300 31.7
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 8.2e-25 118.6 215 37.2
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 1.1e-24 118.2 91 70.3
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 1.1e-24 118.2 119 48.7
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 1.8e-24 117.5 116 48.3
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 2.4e-24 117.1 113 50.4
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 3.1e-24 116.7 328 30.2
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 4.1e-24 116.3 133 45.9
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 5.3e-24 115.9 328 30.2
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 7.0e-24 115.5 112 50.0
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 2.0e-23 114.0 354 28.2
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 2.0e-23 114.0 318 31.8
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 5.9e-23 112.5 319 32.6
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.7e-22 110.9 333 32.1
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 1.7e-22 110.9 111 46.8
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 2.2e-22 110.5 311 32.2
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 2.9e-22 110.2 137 40.9
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 3.8e-22 109.8 316 30.1
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 5.0e-22 109.4 240 31.7
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 8.5e-22 108.6 110 49.1
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 3.2e-21 106.7 223 35.0
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 4.2e-21 106.3 225 32.0
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 5.5e-21 105.9 120 40.0
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 7.2e-21 105.5 301 31.6
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 1.2e-20 104.8 112 42.9
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 1.6e-20 104.4 198 35.9
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 2.1e-20 104.0 129 39.5
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 2.7e-20 103.6 93 55.9
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 3.6e-20 103.2 112 42.0
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 4.7e-20 102.8 253 32.4
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 8.0e-20 102.1 118 44.9
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 1.0e-19 101.7 198 32.8
C03p45450 Brassica napus HOM05D005306 ORTHO05D006158 2.3e-19 100.5 125 47.2
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.0e-19 100.1 295 30.8
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 4.0e-19 99.8 112 42.0
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 1.2e-18 98.2 300 33.0
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 1.2e-18 98.2 214 35.0
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 1.5e-18 97.8 235 32.8
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 2.0e-18 97.4 300 29.0
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 4.4e-18 96.3 242 34.7
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 4.4e-18 96.3 242 34.7
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 4.8e-17 92.8 249 29.7
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 8.2e-17 92.0 92 50.0
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 1.1e-16 91.7 110 38.2
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 1.4e-16 91.3 250 30.4
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 9.1e-16 88.6 95 48.4
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.7e-14 84.3 312 29.8
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 6.5e-14 82.4 118 39.0
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.9e-13 80.9 168 35.1
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 2.5e-13 80.5 278 28.8
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 5.5e-13 79.3 203 29.6
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 2.1e-12 77.4 118 39.8
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 1.8e-11 74.3 104 40.4
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 4.0e-11 73.2 99 39.4
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 1.5e-10 71.2 84 44.0
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 1.4e-08 64.7 309 27.5
Sed0002948 Sechium edule HOM05D003400 ORTHO05D003687 1.2e-07 61.6 169 30.2
BcaC05g28701 Brassica carinata HOM05D005306 ORTHO05D006158 2.0e-07 60.8 72 51.4
CsaV3_5G010950 Cucumis sativus L. HOM05D003400 ORTHO05D003687 2.7e-07 60.5 180 28.9
MELO3C020148.2 Cucumis melo HOM05D003400 ORTHO05D003687 3.5e-07 60.1 180 28.9
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 1.7e-06 57.8 104 33.7
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 2.3e-06 57.4 136 29.4
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 2.3e-06 57.4 31 71.0
ClCG07G005110 Citrullus lanatus HOM05D003400 ORTHO05D003687 6.5e-06 55.8 123 32.5
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 6.5e-06 55.8 77 42.9
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 8.6e-06 55.5 152 27.6


User provided reference genes

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