Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 1.0e-57 226.5 111 100.0
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 1.0e-57 226.5 111 100.0
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 7.8e-50 200.3 111 91.0
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 5.2e-46 187.6 91 100.0
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 3.5e-34 148.3 96 80.2
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 1.0e-25 120.2 91 69.2
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 1.0e-25 120.2 91 69.2
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 1.0e-25 120.2 91 69.2
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 1.0e-25 120.2 91 69.2
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 3.9e-25 118.2 95 70.5
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 3.9e-25 118.2 96 67.7
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 5.1e-25 117.9 91 68.1
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 5.6e-24 114.4 93 66.7
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.6e-23 112.8 97 64.9
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 1.8e-22 109.4 93 63.4
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 3.8e-20 101.7 94 62.8
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 4.1e-14 81.6 106 50.0
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 4.1e-14 81.6 106 50.0
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 1.5e-13 79.7 104 49.0
Aa31LG1G17280 Aethionema arabicum HOM05D004540 ORTHO05D004852 7.6e-13 77.4 70 54.3
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.3e-12 76.6 98 49.0
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 1.3e-12 76.6 79 57.0
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.7e-12 76.3 101 49.5
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 5.0e-12 74.7 100 48.0
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 1.9e-11 72.8 106 47.2
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 2.1e-10 69.3 67 52.2
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.0e-09 67.0 68 52.9
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.8e-09 66.2 74 50.0
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.8e-09 66.2 74 50.0
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.3e-09 65.9 66 56.1
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.3e-09 65.9 78 47.4
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 3.9e-09 65.1 72 52.8
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.9e-09 65.1 72 50.0
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.9e-09 65.1 72 50.0
BcaC03g13276 Brassica carinata HOM05D004540 ORTHO05D004852 8.8e-09 63.9 73 52.1
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 8.8e-09 63.9 73 45.2
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 8.8e-09 63.9 83 47.0
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 8.8e-09 63.9 76 47.4
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 1.1e-08 63.5 80 41.2
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 1.1e-08 63.5 80 41.2
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 1.1e-08 63.5 80 41.2
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 1.1e-08 63.5 72 54.2
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 1.5e-08 63.2 64 43.8
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 1.5e-08 63.2 64 43.8
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 1.5e-08 63.2 80 41.2
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 1.5e-08 63.2 64 43.8
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 1.5e-08 63.2 80 41.2
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.9e-08 62.8 72 48.6
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.5e-08 62.4 77 49.4
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 3.3e-08 62.0 64 42.2
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 3.3e-08 62.0 64 42.2
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 3.3e-08 62.0 87 40.2
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 4.3e-08 61.6 64 42.2
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 5.7e-08 61.2 88 40.9
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 5.7e-08 61.2 80 46.2
A02p00160 Brassica napus HOM05D004540 ORTHO05D004852 7.4e-08 60.8 95 45.3
C02p04070 Brassica napus HOM05D004540 ORTHO05D004852 7.4e-08 60.8 80 48.8
BolC2t06369H Brassica oleracea HOM05D004540 ORTHO05D004852 7.4e-08 60.8 80 48.8
CARHR203600 Cardamine hirsuta HOM05D004540 ORTHO05D004852 7.4e-08 60.8 47 68.1
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 7.4e-08 60.8 44 68.2
A03p04260 Brassica napus HOM05D004540 ORTHO05D004852 9.7e-08 60.5 46 65.2
BolC3t13005H Brassica oleracea HOM05D004540 ORTHO05D004852 9.7e-08 60.5 46 65.2
BraA03t09770Z Brassica rapa HOM05D004540 ORTHO05D004852 9.7e-08 60.5 46 65.2
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 9.7e-08 60.5 72 50.0
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 9.7e-08 60.5 72 50.0
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 9.7e-08 60.5 82 48.8
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 1.7e-07 59.7 32 78.1
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 1.7e-07 59.7 32 78.1
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 1.7e-07 59.7 32 78.1
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.7e-07 59.7 82 43.9
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.2e-07 59.3 66 47.0
BraA02t05000Z Brassica rapa HOM05D004540 ORTHO05D004852 3.7e-07 58.5 80 47.5
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 3.7e-07 58.5 70 44.3
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 3.7e-07 58.5 65 50.8
Aa31LG3G17310 Aethionema arabicum HOM05D004540 ORTHO05D004852 4.8e-07 58.2 37 75.7
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 4.8e-07 58.2 66 45.5
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 4.8e-07 58.2 66 45.5
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 4.8e-07 58.2 66 45.5
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 4.8e-07 58.2 80 45.0
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 6.3e-07 57.8 81 48.1
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 6.3e-07 57.8 81 42.0
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 8.2e-07 57.4 72 50.0
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.1e-06 57.0 68 45.6
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 1.1e-06 57.0 34 64.7
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 1.1e-06 57.0 34 64.7
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 1.1e-06 57.0 66 48.5
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 1.8e-06 56.2 73 43.8
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 1.8e-06 56.2 70 45.7
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 2.4e-06 55.8 65 46.2
BcaB01g05659 Brassica carinata HOM05D004540 ORTHO05D004852 4.1e-06 55.1 39 69.2
BraA10t44817Z Brassica rapa HOM05D004540 ORTHO05D004852 4.1e-06 55.1 32 71.9
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 5.3e-06 54.7 72 40.3
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 5.3e-06 54.7 57 49.1
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 6.9e-06 54.3 64 43.8
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 6.9e-06 54.3 64 43.8
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 6.9e-06 54.3 66 42.4
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 9.1e-06 53.9 86 44.2
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 9.1e-06 53.9 85 42.4


User provided reference genes

Program Settings