Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p09680 Brassica napus HOM05D006161 ORTHO05D007483 1.6e-75 286.2 159 100.0
BolC9t53879H Brassica oleracea HOM05D006161 ORTHO05D007483 2.9e-74 282.0 159 98.7
BraA09t36505Z Brassica rapa HOM05D006161 ORTHO05D007483 8.5e-74 280.4 159 98.1
A09p08560 Brassica napus HOM05D006161 ORTHO05D007483 2.5e-73 278.9 159 97.5
Thhalv10005060m.g Eutrema salsugineum HOM05D006161 ORTHO05D007483 8.0e-72 273.9 159 95.6
Sp2g27240 Schrenkiella parvula HOM05D006161 ORTHO05D007483 2.6e-70 268.9 157 94.9
BolC3t18468H Brassica oleracea HOM05D006161 ORTHO05D007483 7.5e-70 267.3 157 93.6
Carub.0008s2497 Capsella rubella HOM05D006161 ORTHO05D007483 7.5e-70 267.3 157 93.6
BcaB02g09779 Brassica carinata HOM05D006161 ORTHO05D007483 1.3e-69 266.5 156 94.2
C03p62070 Brassica napus HOM05D006161 ORTHO05D007483 1.3e-69 266.5 157 93.6
AT5G64180 Arabidopsis thaliana HOM05D006161 ORTHO05D007483 2.2e-69 265.8 157 93.6
AL8G41450 Arabidopsis lyrata HOM05D006161 ORTHO05D007483 3.7e-69 265.0 157 92.4
CARHR278090 Cardamine hirsuta HOM05D006161 ORTHO05D007483 6.3e-69 264.2 157 93.0
BraA06t26029Z Brassica rapa HOM05D006161 ORTHO05D007483 1.2e-67 260.0 157 91.1
BcaC01g02675 Brassica carinata HOM05D006161 ORTHO05D007483 1.3e-66 256.5 157 91.1
Aa31LG1G17750 Aethionema arabicum HOM05D006161 ORTHO05D007483 5.0e-66 254.6 150 94.0
THA.LOC104799966 Tarenaya hassleriana HOM05D006161 ORTHO05D007483 5.2e-63 244.6 153 88.2
A06p30900 Brassica napus HOM05D006161 ORTHO05D007483 5.9e-59 231.1 157 82.8
PGR142G0837 Punica granatum HOM05D006161 ORTHO05D007483 6.8e-55 217.6 149 77.9
Manes.14G166201 Manihot esculenta HOM05D006161 ORTHO05D007483 2.0e-54 216.1 148 78.4
Atru.chr12.1730 Acer truncatum HOM05D006161 ORTHO05D007483 7.5e-54 214.2 154 76.0
Ciclev10029442m.g Citrus clementina HOM05D006161 ORTHO05D007483 7.5e-54 214.2 154 76.0
TWI14G1433 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 2.2e-53 212.6 154 77.3
Potri.012G022200 Populus trichocarpa HOM05D006161 ORTHO05D007483 6.3e-53 211.1 144 77.8
Sed0024565 Sechium edule HOM05D006161 ORTHO05D007483 4.1e-52 208.4 147 76.9
Hund06386 Selenicereus undatus HOM05D006161 ORTHO05D007483 5.4e-52 208.0 153 71.9
Sc18g0006920 Simmondsia chinensis HOM05D006161 ORTHO05D007483 5.4e-52 208.0 151 74.2
arahy.Tifrunner.gnm1.ann1.6D7HHK Arachis hypogaea HOM05D006161 ORTHO05D007483 1.6e-51 206.5 152 74.3
arahy.Tifrunner.gnm1.ann1.75PVJ4 Arachis hypogaea HOM05D006161 ORTHO05D007483 1.6e-51 206.5 152 74.3
CsaV3_7G006450 Cucumis sativus L. HOM05D006161 ORTHO05D007483 1.6e-51 206.5 147 75.5
Medtr4g094242 Medicago truncatula HOM05D006161 ORTHO05D007483 1.6e-51 206.5 140 79.3
Prupe.8G061800 Prunus persica HOM05D006161 ORTHO05D007483 1.6e-51 206.5 154 72.7
MD05G1163200 Malus domestica HOM05D006161 ORTHO05D007483 2.0e-51 206.1 149 77.9
RcHm_v2.0_Chr3g0485521 Rosa chinensis HOM05D006161 ORTHO05D007483 2.7e-51 205.7 155 75.5
EL10Ac9g21470 Beta vulgaris HOM05D006161 ORTHO05D007483 3.5e-51 205.3 153 71.2
MELO3C018647.2 Cucumis melo HOM05D006161 ORTHO05D007483 3.5e-51 205.3 147 75.5
MD10G1152800 Malus domestica HOM05D006161 ORTHO05D007483 3.5e-51 205.3 149 77.9
Eucgr.I02667 Eucalyptus grandis HOM05D006161 ORTHO05D007483 4.6e-51 204.9 148 76.4
Sabra15G0004000 Salix brachista HOM05D006161 ORTHO05D007483 4.6e-51 204.9 161 71.4
Nitab4.5_0002576g0040 Nicotiana tabacum HOM05D006161 ORTHO05D007483 5.9e-51 204.5 148 75.0
Nitab4.5_0003858g0050 Nicotiana tabacum HOM05D006161 ORTHO05D007483 7.8e-51 204.1 148 75.7
AUR62013116 Chenopodium quinoa HOM05D006161 ORTHO05D007483 1.3e-50 203.4 153 70.6
FAN26G2610 Fragaria x ananassa HOM05D006161 ORTHO05D007483 1.3e-50 203.4 155 74.2
Sopen01g047660 Solanum pennellii HOM05D006161 ORTHO05D007483 1.3e-50 203.4 148 76.4
Rhsim05G0107700 Rhododendron simsii HOM05D006161 ORTHO05D007483 1.7e-50 203.0 148 74.3
Lalb_Chr10g0097811 Lupinus albus HOM05D006161 ORTHO05D007483 2.3e-50 202.6 154 72.1
Peaxi162Scf00001g00019 Petunia axillaris HOM05D006161 ORTHO05D007483 2.3e-50 202.6 145 77.2
CSS0044873 Camellia sinensis var. sinensis HOM05D006161 ORTHO05D007483 2.9e-50 202.2 140 78.6
FAN28G0148 Fragaria x ananassa HOM05D006161 ORTHO05D007483 2.9e-50 202.2 155 73.5
Glyma.05G117900 Glycine max HOM05D006161 ORTHO05D007483 2.9e-50 202.2 154 72.7
CAN.G523.74 Capsicum annuum HOM05D006161 ORTHO05D007483 3.9e-50 201.8 141 77.3
FAN19G1889 Fragaria x ananassa HOM05D006161 ORTHO05D007483 3.9e-50 201.8 153 75.2
FvH4_1g26050 Fragaria vesca HOM05D006161 ORTHO05D007483 6.6e-50 201.1 154 74.0
Oeu047362.1 Olea europaea HOM05D006161 ORTHO05D007483 6.6e-50 201.1 150 70.7
FAN23G0154 Fragaria x ananassa HOM05D006161 ORTHO05D007483 8.6e-50 200.7 155 72.9
FAN23G2587 Fragaria x ananassa HOM05D006161 ORTHO05D007483 8.6e-50 200.7 155 72.9
MD05G1163000 Malus domestica HOM05D006161 ORTHO05D007483 8.6e-50 200.7 149 76.5
PGSC0003DMG400012586 Solanum tuberosum HOM05D006161 ORTHO05D007483 1.1e-49 200.3 148 74.3
Dinv09035 Davidia involucrata HOM05D006161 ORTHO05D007483 1.5e-49 199.9 154 70.8
GSVIVG01003100001 Vitis vinifera HOM05D006161 ORTHO05D007483 1.5e-49 199.9 149 74.5
Psat7g098400 Pisum sativum HOM05D006161 ORTHO05D007483 2.5e-49 199.1 148 74.3
Solyc01g105130.4 Solanum lycopersicum HOM05D006161 ORTHO05D007483 2.5e-49 199.1 148 74.3
vmacro19927 Vaccinium macrocarpon HOM05D006161 ORTHO05D007483 1.2e-48 196.8 148 72.3
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 1.6e-48 196.4 154 68.8
SGA_v2.0_scaffold14G07119 Striga asiatica HOM05D006161 ORTHO05D007483 1.6e-48 196.4 142 73.9
Migut.B00613 Erythranthe guttata HOM05D006161 ORTHO05D007483 2.8e-48 195.7 146 73.3
Glyma.08G072800 Glycine max HOM05D006161 ORTHO05D007483 3.6e-48 195.3 154 71.4
SalBow6G1080 Salvia bowleyana HOM05D006161 ORTHO05D007483 3.6e-48 195.3 149 72.5
SalBow6G1732 Salvia bowleyana HOM05D006161 ORTHO05D007483 3.6e-48 195.3 149 72.5
VMungo0251G3203 Vigna mungo HOM05D006161 ORTHO05D007483 1.0e-47 193.7 145 71.7
Lsat_1_v5_gn_5_107281 Lactuca sativa HOM05D006161 ORTHO05D007483 1.4e-47 193.4 149 70.5
Aqoxy3G03670 Aquilegia oxysepala HOM05D006161 ORTHO05D007483 1.8e-47 193.0 147 70.7
MD00G1096800 Malus domestica HOM05D006161 ORTHO05D007483 3.1e-47 192.2 150 74.7
Lj5P240T24 Lonicera japonica HOM05D006161 ORTHO05D007483 8.9e-47 190.7 134 77.6
MSTRG.16580 Avicennia marina HOM05D006161 ORTHO05D007483 1.2e-46 190.3 154 65.6
CANSAT11G1086 Cannabis sativa HOM05D006161 ORTHO05D007483 1.2e-46 190.3 149 71.1
MSTRG.20298 Avicennia marina HOM05D006161 ORTHO05D007483 1.5e-46 189.9 144 70.1
Phvul.002G208400 Phaseolus vulgaris HOM05D006161 ORTHO05D007483 3.4e-46 188.7 145 70.3
ECA234G1571 Erigeron canadensis HOM05D006161 ORTHO05D007483 4.4e-46 188.3 147 68.0
PSO017G6730 Papaver somniferum HOM05D006161 ORTHO05D007483 1.3e-45 186.8 148 69.6
PSO478G0074 Papaver somniferum HOM05D006161 ORTHO05D007483 1.3e-45 186.8 148 69.6
HanXRQChr10g0295861 Helianthus annuus HOM05D006161 ORTHO05D007483 2.4e-44 182.6 149 66.4
SHI16526 Sapria himalayana HOM05D006161 ORTHO05D007483 5.4e-44 181.4 142 66.9
Cfa005604 Carpinus fangiana HOM05D006161 ORTHO05D007483 1.6e-43 179.9 153 67.3
TAR622G1105 Trochodendron aralioides HOM05D006161 ORTHO05D007483 1.6e-43 179.9 155 66.5
Os12g0502100 Oryza sativa ssp. japonica HOM05D006161 ORTHO05D007483 6.0e-43 177.9 140 67.1
ATR0177G010 Amborella trichopoda HOM05D006161 ORTHO05D007483 1.3e-42 176.8 145 66.2
CDE04G2984 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 3.0e-42 175.6 144 65.3
Lj4g0015467 Lotus japonicus HOM05D006161 ORTHO05D007483 3.9e-42 175.3 154 64.9
ECA236G0554 Erigeron canadensis HOM05D006161 ORTHO05D007483 5.6e-41 171.4 145 61.4
ClCG09G015360 Citrullus lanatus HOM05D006161 ORTHO05D007483 3.6e-40 168.7 147 66.0
Cpa.g.sc42.64 Carica papaya HOM05D006161 ORTHO05D007483 1.1e-39 167.2 147 67.3
CiPaw.05G036100 Carya illinoinensis HOM05D006161 ORTHO05D007483 1.1e-39 167.2 154 64.9
Cc02_g21600 Coffea canephora HOM05D006161 ORTHO05D007483 1.1e-39 167.2 151 65.6
unitig_8.g3487 Utricularia gibba HOM05D006161 ORTHO05D007483 1.1e-36 157.1 212 47.6
Sabra05G0140100 Salix brachista HOM05D006161 ORTHO05D007483 1.9e-36 156.4 122 73.0
Nn4g23459 Nelumbo nucifera HOM05D006161 ORTHO05D007483 9.2e-36 154.1 148 62.2
Lj6g0024224 Lotus japonicus HOM05D006161 ORTHO05D007483 1.6e-35 153.3 154 59.7
QL11p020678 Quercus lobata HOM05D006161 ORTHO05D007483 1.0e-34 150.6 113 76.1
Gohir.A12G014900 Gossypium hirsutum HOM05D006161 ORTHO05D007483 1.7e-34 149.8 143 62.9
Ca_18349_v3 Cicer arietinum L. HOM05D006161 ORTHO05D007483 5.1e-34 148.3 154 57.1
Actinidia00265 Actinidia chinensis HOM05D006161 ORTHO05D007483 6.6e-34 147.9 148 59.5
Haze_10694 Corylus avellana HOM05D006161 ORTHO05D007483 1.1e-33 147.1 110 73.6
Mapoly0094s0011 Marchantia polymorpha HOM05D006161 ORTHO05D007483 5.6e-33 144.8 146 53.4
TWI14G1282 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 1.6e-32 143.3 175 54.3
CDE04G3544 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 2.1e-32 142.9 140 57.9
Potri.015G005600 Populus trichocarpa HOM05D006161 ORTHO05D007483 2.8e-32 142.5 144 59.0
AagrBONN_evm.TU.Sc2ySwM_117.171 Anthoceros agrestis HOM05D006161 ORTHO05D007483 6.2e-32 141.4 138 52.9
Duzib132G0386 Durio zibethinus HOM05D006161 ORTHO05D007483 4.4e-30 135.2 143 58.7
SGA_v2.0_scaffold11G05811 Striga asiatica HOM05D006161 ORTHO05D007483 4.9e-29 131.7 114 63.2
Hma1.2p1_0704F.1_g206700 Hydrangea macrophylla HOM05D006161 ORTHO05D007483 8.4e-29 131.0 111 68.5
DCAR_001788 Daucus carota HOM05D006161 ORTHO05D007483 3.2e-28 129.0 113 61.9
HPP92_024935 Vanilla planifolia HOM05D006161 ORTHO05D007483 5.4e-28 128.3 110 64.5
Thecc.02G139200 Theobroma cacao HOM05D006161 ORTHO05D007483 1.2e-27 127.1 150 55.3
Gohir.D12G015300 Gossypium hirsutum HOM05D006161 ORTHO05D007483 1.0e-26 124.0 143 55.2
Gorai.008G015400 Gossypium raimondii HOM05D006161 ORTHO05D007483 1.0e-26 124.0 143 55.2
Zm00001eb138120 Zea mays HOM05D006161 ORTHO05D007483 1.0e-26 124.0 106 65.1
SMO116G0092 Selaginella moellendorffii HOM05D006161 ORTHO05D007483 1.7e-26 123.2 136 47.8
Zm00001eb409430 Zea mays HOM05D006161 ORTHO05D007483 2.3e-26 122.9 120 58.3
CDE07G1624 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 3.9e-26 122.1 92 75.0
COL.COLO4_13985 Corchorus olitorius HOM05D006161 ORTHO05D007483 2.0e-22 109.8 126 57.1
arahy.Tifrunner.gnm1.ann1.A44469 Arachis hypogaea HOM05D006161 ORTHO05D007483 2.2e-21 106.3 81 74.1
arahy.Tifrunner.gnm1.ann1.HFW61Q Arachis hypogaea HOM05D006161 ORTHO05D007483 3.1e-15 85.9 65 70.8
Pp3c24_330 Physcomitrium patens HOM05D006161 ORTHO05D007483 4.2e-12 75.5 138 37.7
Actinidia23993 Actinidia chinensis HOM05D006161 ORTHO05D007483 1.7e-10 70.1 128 41.4
TPR.G10469 Trifolium pratense HOM05D006161 ORTHO05D007483 5.6e-09 65.1 54 59.3
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 1.6e-08 63.5 45 68.9
VMungo0540G0821 Vigna mungo HOM05D006161 ORTHO05D007483 2.4e-07 59.7 44 68.2
CBR_g70737 Chara braunii HOM05D006161 ORTHO05D007483 3.1e-07 59.3 138 29.7


User provided reference genes

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