Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 4.5e-264 914.1 471 100.0
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 1.4e-262 909.1 471 99.6
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 1.4e-262 909.1 471 99.6
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 1.9e-254 882.1 471 95.8
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 6.3e-250 867.1 471 95.1
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 6.3e-250 867.1 471 95.1
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 2.7e-248 861.7 471 94.5
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 5.9e-248 860.5 459 97.2
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 1.0e-247 859.8 471 94.3
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 1.0e-247 859.8 471 93.6
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 1.7e-247 859.0 459 96.9
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 1.7e-247 859.0 471 94.1
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 3.8e-247 857.8 471 93.8
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 5.5e-246 854.0 464 94.4
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 3.0e-244 848.2 474 92.6
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 2.6e-243 845.1 471 91.9
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 2.2e-242 842.0 471 91.9
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 9.1e-241 836.6 464 92.9
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 3.6e-237 824.7 480 89.0
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 3.3e-230 801.6 473 85.8
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 7.5e-227 790.4 476 83.2
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 6.4e-218 760.8 465 82.6
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 2.4e-217 758.8 465 82.4
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 3.2e-217 758.4 461 82.4
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 4.1e-217 758.1 443 84.9
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 1.6e-216 756.1 463 81.0
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 7.8e-216 753.8 439 90.2
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 1.7e-215 752.7 460 82.4
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 6.6e-215 750.7 441 84.8
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 6.6e-215 750.7 441 84.6
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 6.6e-215 750.7 456 82.5
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 1.1e-214 750.0 455 82.4
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 7.3e-214 747.3 460 81.5
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 9.5e-214 746.9 464 80.2
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 1.6e-213 746.1 463 81.2
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 3.6e-213 745.0 443 83.3
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 8.1e-213 743.8 436 84.6
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 1.4e-212 743.0 449 83.3
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 3.1e-212 741.9 432 85.0
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 8.9e-212 740.3 443 83.1
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 1.5e-211 739.6 432 84.7
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.6e-211 738.8 445 82.0
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 7.5e-211 737.3 439 82.9
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 7.5e-211 737.3 439 83.1
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 1.7e-210 736.1 439 82.5
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 2.2e-210 735.7 453 80.8
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 2.2e-210 735.7 443 81.5
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 6.4e-210 734.2 438 83.6
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 8.3e-210 733.8 443 82.2
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 8.3e-210 733.8 443 82.2
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 1.1e-209 733.4 439 82.7
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 1.9e-209 732.6 443 83.1
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.9e-209 732.6 443 82.2
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 7.1e-209 730.7 440 81.8
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 7.1e-209 730.7 450 81.8
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 2.1e-208 729.2 443 81.7
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 2.1e-208 729.2 443 81.7
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 2.7e-208 728.8 443 81.5
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 2.7e-208 728.8 446 80.7
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 3.5e-208 728.4 461 79.4
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 3.5e-208 728.4 443 81.3
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 6.0e-208 727.6 456 79.6
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 1.0e-207 726.9 439 82.5
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.3e-207 726.5 457 79.6
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.9e-207 724.9 435 82.5
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 3.9e-207 724.9 459 79.1
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 3.9e-207 724.9 452 80.1
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 5.1e-207 724.5 445 81.1
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 5.1e-207 724.5 460 78.0
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 6.6e-207 724.2 439 80.9
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 6.6e-207 724.2 439 82.0
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 8.6e-207 723.8 440 81.4
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.5e-206 723.0 443 80.6
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 1.9e-206 722.6 458 78.8
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 1.9e-206 722.6 440 81.1
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 7.3e-206 720.7 459 78.9
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 1.6e-205 719.5 463 77.8
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.6e-205 719.5 440 80.7
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 8.1e-205 717.2 440 80.5
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 8.1e-205 717.2 440 80.7
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 1.4e-204 716.5 439 80.6
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.4e-204 716.5 441 80.5
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 3.1e-204 715.3 449 79.7
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 5.2e-204 714.5 436 81.2
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 6.8e-204 714.1 436 81.2
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 8.9e-204 713.8 458 79.0
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 2.6e-203 712.2 443 78.8
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 2.6e-203 712.2 426 82.4
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 2.6e-203 712.2 437 81.0
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 2.6e-203 712.2 458 79.3
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 7.6e-203 710.7 434 80.9
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 9.9e-203 710.3 462 77.3
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 2.2e-202 709.1 437 79.6
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 2.2e-202 709.1 450 79.1
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.1e-201 706.8 437 79.4
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 2.4e-201 705.7 435 79.5
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 7.1e-201 704.1 436 79.8
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 4.6e-200 701.4 435 79.1
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 4.6e-200 701.4 435 79.3
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.7e-199 699.5 457 77.5
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 3.9e-199 698.4 431 80.0
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 3.9e-199 698.4 441 78.9
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 5.1e-199 698.0 431 80.0
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 6.6e-199 697.6 490 72.9
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 8.7e-199 697.2 452 77.2
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 1.9e-198 696.0 439 79.0
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 2.5e-198 695.7 427 81.7
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 1.6e-197 693.0 449 77.3
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 6.2e-197 691.0 457 77.0
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 6.2e-197 691.0 442 76.5
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.4e-196 689.1 439 77.7
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 2.4e-196 689.1 431 79.1
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 7.6e-195 684.1 443 78.1
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.2e-192 676.8 437 77.3
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 7.8e-192 674.1 413 80.6
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 5.6e-190 667.9 448 73.4
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 8.4e-186 654.1 388 83.2
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 5.8e-179 631.3 468 67.3
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 2.5e-174 615.9 437 71.2
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 2.1e-173 612.8 432 70.6
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 4.0e-172 608.6 474 66.5
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 5.3e-172 608.2 427 71.7
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 9.7e-166 587.4 434 67.5
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 3.1e-164 582.4 350 81.7
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 2.0e-163 579.7 426 68.5
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 3.2e-161 572.4 453 64.7
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.9e-158 563.1 484 64.7
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 2.5e-153 546.2 428 66.4
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.4e-147 525.8 318 82.1
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 2.2e-146 523.1 315 82.5
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 5.7e-118 428.7 447 50.8
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 1.1e-113 414.5 330 66.4
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 1.9e-113 413.7 258 81.0
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 4.3e-113 412.5 273 75.5
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 1.2e-110 404.4 289 72.3
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 1.9e-108 397.1 232 84.1
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 3.5e-107 392.9 258 75.6
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 3.1e-87 326.6 405 51.1
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 8.9e-87 325.1 229 72.9
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 2.4e-84 317.0 201 78.6
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 2.3e-82 310.5 178 84.8
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 4.3e-81 306.2 180 81.1
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 1.3e-72 278.1 223 69.5
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 3.6e-72 276.6 218 69.3
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 1.8e-71 274.2 223 68.2
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 1.2e-70 271.6 245 64.1
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 1.3e-69 268.1 182 74.7
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 1.9e-68 264.2 401 41.4
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 1.6e-67 261.2 222 61.7
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 7.4e-65 252.3 221 63.8
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 7.4e-65 252.3 295 48.1
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 3.7e-56 223.4 125 84.8
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.5e-49 201.4 116 83.6
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 1.5e-41 174.9 188 53.7
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.8e-37 160.2 136 61.8
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 2.7e-35 154.1 91 81.3
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 1.1e-28 132.1 158 48.1
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 3.9e-26 123.6 212 43.4
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 2.0e-25 121.3 133 45.1
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 9.1e-23 112.5 148 49.3
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 1.3e-21 108.6 67 82.1
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 3.8e-21 107.1 125 51.2
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 6.5e-21 106.3 78 65.4
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 4.8e-16 90.1 64 70.3
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 1.1e-15 89.0 51 90.2
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 1.1e-15 89.0 57 78.9
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 3.1e-15 87.4 66 66.7
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 1.2e-14 85.5 79 54.4
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 1.9e-12 78.2 46 87.0
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 3.6e-11 73.9 48 79.2
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 1.8e-10 71.6 69 60.9
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 8.8e-10 69.3 69 60.9
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 3.4e-09 67.4 49 67.3
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 3.7e-08 63.9 37 83.8
vmacro07499 Vaccinium macrocarpon HOM05D004109 ORTHO05D426741 3.1e-07 60.8 51 66.7
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 1.6e-06 58.5 31 83.9
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 5.9e-06 56.6 78 47.4


User provided reference genes

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