Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23332 Brassica carinata HOM05D005391 ORTHO05D006694 1.5e-73 279.6 160 100.0
C09p09360 Brassica napus HOM05D005391 ORTHO05D006694 1.5e-73 279.6 160 100.0
BolC9t53848H Brassica oleracea HOM05D005391 ORTHO05D006694 5.2e-71 271.2 164 97.0
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 2.7e-67 258.8 164 88.4
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 4.6e-67 258.1 164 87.8
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 3.2e-60 235.3 167 82.6
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 7.8e-59 230.7 169 82.2
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 1.7e-58 229.6 169 81.7
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 3.0e-58 228.8 173 76.3
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 1.9e-57 226.1 169 80.5
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 1.9e-57 226.1 169 80.5
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 1.2e-56 223.4 172 80.8
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 1.4e-55 219.9 168 78.0
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 6.8e-55 217.6 176 75.6
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 5.4e-52 208.0 171 78.4
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 1.2e-51 206.8 177 74.0
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 7.3e-49 197.6 166 75.9
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 5.2e-47 191.4 172 73.3
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 1.1e-41 173.7 168 67.3
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 1.7e-37 159.8 179 59.2
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 4.2e-36 155.2 180 53.3
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 9.3e-36 154.1 177 52.5
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 2.7e-35 152.5 177 51.4
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 2.7e-35 152.5 177 51.4
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 6.0e-35 151.4 178 52.2
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 5.1e-34 148.3 175 52.6
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 6.6e-34 147.9 190 52.1
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 8.7e-34 147.5 178 50.6
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 1.9e-33 146.4 189 51.3
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 1.9e-33 146.4 171 57.3
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 5.6e-33 144.8 174 52.3
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 5.6e-33 144.8 176 48.9
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 7.3e-33 144.4 181 53.0
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 9.6e-33 144.1 175 50.9
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 4.8e-32 141.7 165 52.1
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 6.2e-32 141.4 165 50.3
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 8.1e-32 141.0 166 50.6
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 8.1e-32 141.0 176 49.4
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 8.1e-32 141.0 180 48.9
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.4e-31 140.2 174 52.3
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.8e-31 139.8 175 51.4
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.8e-31 139.8 175 51.4
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 1.8e-31 139.8 159 50.3
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 1.8e-31 139.8 166 53.0
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 3.1e-31 139.0 181 50.8
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 4.0e-31 138.7 167 52.7
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 4.0e-31 138.7 184 53.3
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 5.3e-31 138.3 184 47.8
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 6.9e-31 137.9 161 48.4
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 6.9e-31 137.9 164 51.8
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 6.9e-31 137.9 176 56.2
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 9.0e-31 137.5 185 48.6
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 9.0e-31 137.5 165 50.3
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 1.2e-30 137.1 168 48.8
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 1.5e-30 136.7 172 51.2
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 1.5e-30 136.7 176 48.9
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 2.0e-30 136.3 166 50.6
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 2.0e-30 136.3 168 48.2
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 2.6e-30 136.0 175 48.6
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 2.6e-30 136.0 178 48.3
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 3.4e-30 135.6 169 49.1
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 4.5e-30 135.2 166 50.0
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 4.5e-30 135.2 167 53.3
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 5.8e-30 134.8 169 52.1
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 7.6e-30 134.4 188 46.8
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 9.9e-30 134.0 167 49.7
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 9.9e-30 134.0 171 53.2
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 1.3e-29 133.7 166 50.0
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 1.3e-29 133.7 171 47.4
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 2.2e-29 132.9 177 50.8
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 3.8e-29 132.1 171 47.4
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 6.4e-29 131.3 166 50.0
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 6.4e-29 131.3 182 47.8
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 1.4e-28 130.2 164 54.9
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 1.4e-28 130.2 173 49.7
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 1.9e-28 129.8 189 46.6
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 1.9e-28 129.8 182 46.2
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 3.2e-28 129.0 192 44.3
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 4.2e-28 128.6 181 47.5
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 7.1e-28 127.9 164 48.8
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 7.1e-28 127.9 195 43.6
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 1.6e-27 126.7 169 47.3
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.6e-27 126.7 162 46.3
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 2.1e-27 126.3 174 46.6
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 3.5e-27 125.6 164 48.2
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 4.6e-27 125.2 195 45.1
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 6.0e-27 124.8 164 54.9
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 1.8e-26 123.2 233 42.5
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 3.0e-26 122.5 166 53.0
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 3.9e-26 122.1 169 53.3
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 5.1e-26 121.7 190 43.7
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 8.7e-26 120.9 199 42.7
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 1.1e-25 120.6 169 45.0
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 1.5e-25 120.2 179 51.4
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 1.5e-25 120.2 177 52.5
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 1.9e-25 119.8 193 40.9
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 1.9e-25 119.8 182 48.4
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 3.3e-25 119.0 164 48.8
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 5.6e-25 118.2 165 44.8
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 7.4e-25 117.9 182 47.8
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 9.6e-25 117.5 177 52.5
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 2.4e-23 112.8 167 43.1
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 2.4e-23 112.8 186 48.4
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 6.9e-23 111.3 171 46.8
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 9.0e-23 110.9 171 44.4
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 9.0e-23 110.9 192 42.7
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 3.4e-22 109.0 172 42.4
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 1.4e-20 103.6 220 41.8
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 4.2e-20 102.1 220 41.4
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 2.1e-19 99.8 161 39.8
HanXRQChr09g0273301 Helianthus annuus HOM05D005391 ORTHO05D006694 7.9e-19 97.8 146 45.9
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 3.0e-18 95.9 164 45.1
Actinidia08882 Actinidia chinensis HOM05D005391 ORTHO05D006694 5.1e-18 95.1 145 46.2
HPP92_023119 Vanilla planifolia HOM05D005391 ORTHO05D006694 1.5e-17 93.6 163 41.1
Ah.07g204620 Amaranthus hybridus HOM05D005391 ORTHO05D006694 2.8e-16 89.4 128 43.8
CSS0010891 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 4.0e-15 85.5 106 51.9
Mapoly0007s0225 Marchantia polymorpha HOM05D005391 ORTHO05D006694 1.5e-14 83.6 158 35.4
DCAR_021623 Daucus carota HOM05D005391 ORTHO05D006694 3.4e-14 82.4 161 33.5
FAN23G2258 Fragaria x ananassa HOM05D005391 ORTHO05D006694 4.9e-13 78.6 128 43.0
Oeu040668.1 Olea europaea HOM05D005391 ORTHO05D006694 1.9e-12 76.6 146 38.4
Pp3c7_3280 Physcomitrium patens HOM05D005391 ORTHO05D006694 1.9e-12 76.6 168 33.3
Sc04g0000550 Simmondsia chinensis HOM05D005391 ORTHO05D006694 1.9e-12 76.6 135 42.2
Ca_01190_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 2.5e-12 76.3 131 41.2
SMO364G0653 Selaginella moellendorffii HOM05D005391 ORTHO05D006694 2.1e-11 73.2 160 30.0
AagrBONN_evm.TU.Sc2ySwM_369.268 Anthoceros agrestis HOM05D005391 ORTHO05D006694 7.9e-11 71.2 161 31.1
VMungo1309G0665 Vigna mungo HOM05D005391 ORTHO05D006694 7.9e-11 71.2 100 46.0
BcaB07g29688 Brassica carinata HOM05D005391 ORTHO05D006694 2.5e-09 66.2 34 91.2
CSS0049043 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 3.7e-08 62.4 47 63.8
Gohir.1Z049409 Gossypium hirsutum HOM05D005391 ORTHO05D006694 4.8e-08 62.0 119 39.5
FAN23G0903 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.4e-07 60.5 157 35.0
SEGI_13536 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 1.8e-07 60.1 98 35.7


User provided reference genes

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