Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 0.0e+00 1169.5 660 100.0
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 0.0e+00 1164.1 660 99.7
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 0.0e+00 1103.6 663 95.5
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 0.0e+00 1092.4 663 94.6
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 2.3e-306 1055.0 663 85.7
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 1.6e-304 1048.9 664 87.8
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 5.1e-298 1027.3 663 85.1
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 1.5e-297 1025.8 663 85.1
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 7.4e-297 1023.5 664 89.0
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 4.1e-287 991.1 662 81.6
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 2.0e-257 892.5 666 75.1
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 3.5e-214 748.8 656 64.9
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 2.5e-212 742.7 664 66.7
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 4.0e-210 735.3 624 66.8
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 4.0e-210 735.3 631 65.5
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 5.2e-210 734.9 645 63.7
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 1.5e-209 733.4 654 64.7
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 2.0e-209 733.0 624 66.7
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 2.6e-209 732.6 656 60.8
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 6.6e-205 718.0 634 63.6
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 2.8e-203 712.6 642 63.2
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 3.6e-203 712.2 659 62.8
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 1.1e-202 710.7 644 62.4
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 6.9e-202 708.0 700 57.1
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 9.9e-201 704.1 657 61.0
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 1.4e-199 700.3 635 59.5
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 1.4e-199 700.3 637 59.3
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 7.1e-199 698.0 639 60.9
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 2.7e-198 696.0 632 59.2
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 3.9e-197 692.2 619 59.1
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.5e-196 690.3 647 59.7
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.5e-196 689.5 657 60.0
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 1.4e-194 683.7 654 59.2
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 1.2e-193 680.6 642 57.0
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 3.8e-192 675.6 543 64.5
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 3.2e-191 672.5 624 56.4
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 1.2e-190 670.6 643 60.3
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 1.6e-190 670.2 649 59.5
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 1.6e-190 670.2 671 54.5
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 2.7e-190 669.5 538 63.9
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 2.7e-190 669.5 614 57.7
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 7.9e-190 667.9 622 57.6
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 3.9e-189 665.6 619 57.2
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 1.5e-188 663.7 562 60.3
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 1.5e-188 663.7 621 57.6
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 3.3e-188 662.5 650 55.1
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 4.3e-188 662.1 655 57.6
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 5.6e-188 661.8 620 56.9
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 1.3e-187 660.6 632 60.9
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 1.6e-187 660.2 615 61.3
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 1.6e-187 660.2 644 55.7
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 2.1e-187 659.8 622 56.4
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 2.1e-187 659.8 622 56.4
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 2.8e-187 659.4 623 62.1
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 1.1e-186 657.5 619 60.9
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.8e-186 656.8 643 55.1
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 6.9e-186 654.8 653 54.5
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 2.0e-185 653.3 617 56.9
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 4.5e-185 652.1 614 60.7
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 7.6e-185 651.4 617 62.7
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 1.3e-184 650.6 654 58.3
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 1.3e-184 650.6 572 59.1
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 4.9e-184 648.7 654 58.3
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 4.2e-183 645.6 622 61.4
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 7.1e-183 644.8 600 57.7
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 2.1e-182 643.3 656 57.8
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 3.5e-182 642.5 576 56.9
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.5e-182 642.5 618 60.0
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 1.0e-181 641.0 626 58.8
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 1.0e-181 641.0 626 56.4
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 2.3e-181 639.8 626 55.9
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 5.1e-181 638.6 611 61.0
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 1.1e-180 637.5 627 54.5
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 2.5e-180 636.3 643 54.0
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 2.8e-179 632.9 619 54.9
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 3.1e-178 629.4 573 61.6
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 2.9e-176 622.9 660 55.0
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 6.1e-174 615.1 522 63.6
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 3.3e-172 609.4 639 56.2
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 1.8e-170 603.6 544 61.9
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 2.2e-168 596.7 608 56.6
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 2.7e-166 589.7 674 53.4
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 2.5e-159 566.6 636 53.6
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 4.7e-158 562.4 508 63.4
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.0e-157 561.2 456 64.0
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 3.1e-154 549.7 619 49.4
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 5.0e-152 542.3 611 50.7
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 9.4e-151 538.1 461 60.7
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 3.6e-150 536.2 607 56.2
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 3.5e-145 519.6 453 60.5
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 2.1e-142 510.4 672 45.4
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.7e-131 474.2 513 52.6
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 8.0e-126 455.3 613 46.8
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 1.7e-123 447.6 390 62.6
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.5e-119 434.5 424 57.1
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 1.5e-119 434.5 613 46.0
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 4.3e-119 433.0 478 49.6
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 9.5e-119 431.8 624 44.2
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 6.8e-117 425.6 639 46.3
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.8e-113 412.1 316 64.9
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.5e-111 407.9 365 64.7
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 6.4e-107 392.5 629 40.1
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 2.0e-100 370.9 355 54.6
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 1.2e-97 361.7 505 48.3
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 1.7e-91 341.3 317 53.6
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.1e-80 303.1 485 40.6
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 1.8e-77 294.7 283 59.4
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 9.0e-77 292.4 317 53.9
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.6e-68 262.7 207 60.9
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.8e-67 260.4 171 71.3
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 3.3e-63 247.3 185 74.1
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 9.0e-61 239.2 284 51.8
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.4e-60 237.3 171 66.7
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.3e-54 218.8 191 59.2
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 2.7e-49 201.1 174 63.8
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 2.6e-47 194.5 177 75.7
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 2.2e-46 191.4 350 36.9
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 2.4e-45 188.0 197 64.0
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 9.4e-42 176.0 118 69.5
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.9e-34 151.8 259 42.1
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 9.4e-34 149.4 115 67.0
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 8.0e-33 146.4 169 48.5
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.4e-32 145.6 162 62.3
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 1.4e-32 145.6 168 54.2
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.8e-32 145.2 162 62.3
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.4e-29 135.6 101 62.4
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.8e-29 135.2 93 69.9
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.2e-25 122.5 97 60.8
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.3e-22 112.5 80 66.2
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 7.0e-21 106.7 73 63.0
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.9e-19 101.3 78 65.4
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 2.5e-18 98.2 70 61.4
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 1.0e-16 92.8 44 95.5
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 4.0e-16 90.9 43 95.3
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 4.0e-16 90.9 43 95.3
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 7.5e-15 86.7 78 59.0
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 1.3e-14 85.9 100 46.0
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 2.4e-13 81.6 89 49.4
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 1.0e-11 76.3 86 50.0
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 2.5e-10 71.6 42 71.4
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 2.8e-09 68.2 54 61.1


User provided reference genes

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