Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 5.3e-39 164.1 94 100.0
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 5.3e-39 164.1 94 100.0
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 5.3e-39 164.1 94 100.0
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 3.0e-34 148.3 93 89.2
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 3.3e-33 144.8 94 90.4
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 1.6e-32 142.5 94 88.3
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 3.7e-32 141.4 93 79.6
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 8.1e-32 140.2 94 87.2
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 4.0e-31 137.9 94 86.2
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 1.2e-30 136.3 93 75.3
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 1.5e-30 136.0 72 91.7
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 9.9e-30 133.3 93 79.6
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 2.9e-29 131.7 72 87.5
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 3.8e-29 131.3 72 87.5
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 4.2e-28 127.9 72 83.3
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 4.6e-27 124.4 94 79.8
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 4.6e-27 124.4 94 79.8
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 1.0e-26 123.2 72 80.6
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 1.8e-26 122.5 72 81.9
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 2.0e-22 109.0 93 60.2
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 3.2e-20 101.7 93 61.3
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 4.2e-20 101.3 93 57.0
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 4.2e-20 101.3 93 59.1
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 9.3e-20 100.1 72 65.3
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 1.2e-19 99.8 72 66.7
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 1.2e-19 99.8 72 62.5
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 1.2e-19 99.8 72 65.3
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 1.2e-19 99.8 72 65.3
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 1.2e-19 99.8 72 66.7
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 1.6e-19 99.4 72 65.3
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 1.6e-19 99.4 93 60.2
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 2.1e-19 99.0 72 66.7
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 3.5e-19 98.2 72 65.3
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 4.6e-19 97.8 93 59.1
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 4.6e-19 97.8 93 58.1
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 4.6e-19 97.8 72 63.9
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 4.6e-19 97.8 72 63.9
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 6.0e-19 97.4 72 63.9
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 6.0e-19 97.4 72 63.9
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 7.9e-19 97.1 72 61.1
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 7.9e-19 97.1 72 63.9
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 1.0e-18 96.7 72 63.9
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 1.0e-18 96.7 72 62.5
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 1.3e-18 96.3 72 63.9
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 1.3e-18 96.3 72 63.9
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 1.3e-18 96.3 93 59.1
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 1.8e-18 95.9 72 62.5
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 1.8e-18 95.9 72 62.5
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 2.3e-18 95.5 93 52.7
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 2.3e-18 95.5 72 62.5
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 2.3e-18 95.5 98 55.1
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 3.0e-18 95.1 72 59.7
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 3.0e-18 95.1 72 59.7
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 3.0e-18 95.1 72 63.9
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 3.0e-18 95.1 93 55.9
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 3.9e-18 94.7 72 63.9
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 5.1e-18 94.4 69 66.7
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 8.7e-18 93.6 86 57.0
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 1.1e-17 93.2 72 59.7
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 1.5e-17 92.8 72 62.5
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 1.9e-17 92.4 72 59.7
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 1.9e-17 92.4 72 59.7
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 2.5e-17 92.0 68 61.8
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 2.5e-17 92.0 72 61.1
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 3.3e-17 91.7 93 55.9
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 4.3e-17 91.3 93 55.9
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 5.7e-17 90.9 93 55.9
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 9.7e-17 90.1 72 62.5
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 9.7e-17 90.1 72 62.5
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 9.7e-17 90.1 93 55.9
BolC3t18603H Brassica oleracea HOM05D006995 ORTHO05D008870 1.3e-16 89.7 48 91.7
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 1.3e-16 89.7 93 54.8
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 2.2e-16 89.0 72 59.7
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 2.2e-16 89.0 72 59.7
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 2.8e-16 88.6 72 62.5
CiPaw.11G020900 Carya illinoinensis HOM05D006995 ORTHO05D008870 2.8e-16 88.6 65 63.1
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 8.2e-16 87.0 72 58.3
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 1.1e-15 86.7 64 64.1
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 1.8e-15 85.9 72 59.7
Hund02782 Selenicereus undatus HOM05D006995 ORTHO05D008870 6.9e-15 84.0 93 52.7
EL10Ac5g10662 Beta vulgaris HOM05D006995 ORTHO05D008870 1.2e-14 83.2 93 58.1
Gohir.D12G202400 Gossypium hirsutum HOM05D006995 ORTHO05D008870 1.5e-14 82.8 72 59.7
SGA_v2.0_scaffold90G27846 Striga asiatica HOM05D006995 ORTHO05D008870 5.0e-13 77.8 53 69.8
CiPaw.12G030600 Carya illinoinensis HOM05D006995 ORTHO05D008870 8.5e-13 77.0 93 49.5
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 1.9e-12 75.9 65 56.9
Sc04g0001540 Simmondsia chinensis HOM05D006995 ORTHO05D008870 2.5e-12 75.5 99 44.4
ATR0824G277 Amborella trichopoda HOM05D006995 ORTHO05D008870 4.2e-12 74.7 93 50.5
Zm00001eb183600 Zea mays HOM05D006995 ORTHO05D008870 7.2e-12 73.9 93 51.6
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 9.4e-12 73.6 72 55.6
Os02g0593400 Oryza sativa ssp. japonica HOM05D006995 ORTHO05D008870 9.4e-12 73.6 93 51.6
vmacro16643 Vaccinium macrocarpon HOM05D006995 ORTHO05D008870 9.4e-12 73.6 103 39.8
HPP92_024272 Vanilla planifolia HOM05D006995 ORTHO05D008870 9.4e-12 73.6 93 50.5
Zm00001eb245930 Zea mays HOM05D006995 ORTHO05D008870 1.2e-11 73.2 93 50.5
Aqoxy5G03762 Aquilegia oxysepala HOM05D006995 ORTHO05D008870 6.1e-11 70.9 93 48.4
COL.COLO4_05561 Corchorus olitorius HOM05D006995 ORTHO05D008870 6.1e-11 70.9 48 68.8
Ah.11g042030 Amaranthus hybridus HOM05D006995 ORTHO05D008870 1.4e-10 69.7 86 50.0
Sabra12G0061300 Salix brachista HOM05D006995 ORTHO05D008870 1.4e-10 69.7 48 66.7
ATR0743G118 Amborella trichopoda HOM05D006995 ORTHO05D008870 3.9e-10 68.2 93 46.2
C07p20090 Brassica napus HOM05D001146 ORTHO05D000973 6.7e-10 67.4 43 83.7
BolC7t42530H Brassica oleracea HOM05D001146 ORTHO05D000973 6.7e-10 67.4 43 83.7
Haze_07576 Corylus avellana HOM05D006995 ORTHO05D008870 1.5e-09 66.2 48 62.5
BcaC01g05868 Brassica carinata HOM05D001146 ORTHO05D000973 5.7e-09 64.3 43 79.1
C03p21590 Brassica napus HOM05D001146 ORTHO05D000973 5.7e-09 64.3 43 79.1
C06p19720 Brassica napus HOM05D001146 ORTHO05D000973 5.7e-09 64.3 41 80.5
BolC3t14543H Brassica oleracea HOM05D006995 ORTHO05D104637 5.7e-09 64.3 43 79.1
Ah.11g051120 Amaranthus hybridus HOM05D006995 ORTHO05D008870 2.2e-08 62.4 76 55.3
SHI24880 Sapria himalayana HOM05D006995 ORTHO05D008870 3.1e-07 58.5 78 42.3
AUR62008151 Chenopodium quinoa HOM05D006995 ORTHO05D008870 5.3e-07 57.8 57 52.6
BcaC04g20222 Brassica carinata HOM05D001146 ORTHO05D000973 9.1e-07 57.0 37 78.4
C04p43920 Brassica napus HOM05D001146 ORTHO05D000973 9.1e-07 57.0 30 86.7
C09p46490 Brassica napus HOM05D001146 ORTHO05D000973 9.1e-07 57.0 37 78.4
BolC4t25973H Brassica oleracea HOM05D001146 ORTHO05D000973 9.1e-07 57.0 30 86.7
BcaC09g51351 Brassica carinata HOM05D006995 ORTHO05D008870 1.5e-06 56.2 52 53.8
ECA247G3417 Erigeron canadensis HOM05D006995 ORTHO05D008870 1.5e-06 56.2 48 56.2
BolC7t43312H Brassica oleracea HOM05D001146 ORTHO05D000973 4.5e-06 54.7 30 83.3


User provided reference genes

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