Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 2.3e-14 80.9 37 100.0
C09p08830 Brassica napus HOM05D005796 ORTHO05D007054 2.3e-14 80.9 37 100.0
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 2.5e-13 77.4 37 97.3
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 2.5e-13 77.4 37 97.3
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 2.5e-13 77.4 37 97.3
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 1.1e-11 72.0 37 86.5
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 1.1e-11 72.0 37 86.5
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 1.1e-11 72.0 37 86.5
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 1.4e-11 71.6 37 83.8
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 1.4e-11 71.6 37 86.5
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 1.8e-11 71.2 37 86.5
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 2.4e-11 70.9 37 83.8
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 4.1e-11 70.1 37 81.1
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 6.9e-11 69.3 37 86.5
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 6.9e-11 69.3 37 81.1
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 1.2e-10 68.6 37 81.1
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 1.5e-10 68.2 36 80.6
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 1.5e-10 68.2 36 80.6
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 3.4e-10 67.0 36 77.8
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 4.5e-10 66.6 36 77.8
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 7.7e-10 65.9 36 75.0
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 7.7e-10 65.9 37 70.3
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 1.0e-09 65.5 36 75.0
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 1.0e-09 65.5 36 72.2
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 1.3e-09 65.1 37 75.7
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 1.3e-09 65.1 37 70.3
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 2.2e-09 64.3 37 73.0
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 2.2e-09 64.3 37 70.3
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 2.9e-09 63.9 36 69.4
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 2.9e-09 63.9 36 69.4
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 3.8e-09 63.5 37 70.3
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 3.8e-09 63.5 36 75.0
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 3.8e-09 63.5 37 70.3
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 3.8e-09 63.5 36 69.4
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 5.0e-09 63.2 36 75.0
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 5.0e-09 63.2 36 72.2
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 6.5e-09 62.8 36 69.4
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 6.5e-09 62.8 36 69.4
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 8.5e-09 62.4 36 72.2
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 1.1e-08 62.0 37 75.7
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 1.1e-08 62.0 37 75.7
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 1.1e-08 62.0 36 66.7
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 1.4e-08 61.6 36 72.2
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 2.5e-08 60.8 36 69.4
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 2.5e-08 60.8 36 69.4
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 3.2e-08 60.5 36 69.4
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 3.2e-08 60.5 37 70.3
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 3.2e-08 60.5 36 66.7
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 3.2e-08 60.5 36 66.7
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 3.2e-08 60.5 36 66.7
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 4.2e-08 60.1 36 66.7
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 5.5e-08 59.7 37 67.6
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 9.4e-08 58.9 36 72.2
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 9.4e-08 58.9 36 66.7
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 1.2e-07 58.5 37 67.6
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 1.2e-07 58.5 36 63.9
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 1.6e-07 58.2 35 62.9
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 2.1e-07 57.8 37 64.9
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 2.1e-07 57.8 36 63.9
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 2.1e-07 57.8 36 61.1
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 2.1e-07 57.8 36 66.7
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 2.1e-07 57.8 37 67.6
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 2.7e-07 57.4 37 59.5
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 2.7e-07 57.4 34 73.5
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 2.7e-07 57.4 36 63.9
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 3.6e-07 57.0 36 63.9
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 6.1e-07 56.2 37 64.9
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 7.9e-07 55.8 36 63.9
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 7.9e-07 55.8 36 63.9
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 7.9e-07 55.8 35 65.7
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 7.9e-07 55.8 34 67.6
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 1.0e-06 55.5 36 61.1
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 1.0e-06 55.5 37 64.9
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 1.0e-06 55.5 36 61.1
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 1.0e-06 55.5 36 66.7
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 1.4e-06 55.1 36 66.7
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 1.4e-06 55.1 34 70.6
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 1.4e-06 55.1 34 70.6
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 1.4e-06 55.1 34 70.6
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 1.4e-06 55.1 34 70.6
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 1.4e-06 55.1 36 63.9
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 1.4e-06 55.1 37 59.5
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 2.3e-06 54.3 37 62.2
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 3.0e-06 53.9 36 66.7
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 3.0e-06 53.9 35 62.9
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 5.1e-06 53.1 34 64.7
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 5.1e-06 53.1 37 59.5
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 5.1e-06 53.1 36 61.1
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 6.7e-06 52.8 34 70.6
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 6.7e-06 52.8 37 54.1


User provided reference genes

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