Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p08660 Brassica napus HOM05D004904 ORTHO05D010762 1.6e-85 319.3 151 100.0
BcaC04g23406 Brassica carinata HOM05D004904 ORTHO05D010762 5.1e-76 287.7 133 100.0
BolC9t53777H Brassica oleracea HOM05D004904 ORTHO05D010762 1.5e-75 286.2 133 99.2
A09p07760 Brassica napus HOM05D004904 ORTHO05D010762 2.8e-74 282.0 133 97.0
BraA09t36424Z Brassica rapa HOM05D004904 ORTHO05D010762 2.8e-74 282.0 133 97.0
A10p15680 Brassica napus HOM05D004904 ORTHO05D010762 3.6e-66 255.0 133 86.5
BraA10t43666Z Brassica rapa HOM05D004904 ORTHO05D010762 3.6e-66 255.0 133 86.5
C09p50630 Brassica napus HOM05D004904 ORTHO05D010762 9.0e-65 250.4 133 85.0
BolC9t57916H Brassica oleracea HOM05D004904 ORTHO05D010762 9.0e-65 250.4 133 85.0
A09p07720 Brassica napus HOM05D004904 ORTHO05D010762 2.5e-59 232.3 130 80.0
C09p08640 Brassica napus HOM05D004904 ORTHO05D010762 5.6e-59 231.1 130 80.8
BolC9t53775H Brassica oleracea HOM05D004904 ORTHO05D010762 5.6e-59 231.1 130 80.8
BraA09t36422Z Brassica rapa HOM05D004904 ORTHO05D010762 1.6e-58 229.6 130 79.2
BcaC04g23408 Brassica carinata HOM05D004904 ORTHO05D010762 1.3e-55 219.9 123 81.3
BcaB06g25859 Brassica carinata HOM05D004904 ORTHO05D010762 7.9e-53 210.7 127 72.4
C09p08630 Brassica napus HOM05D004904 ORTHO05D010762 1.6e-50 203.0 130 69.2
BolC9t53774H Brassica oleracea HOM05D004904 ORTHO05D010762 1.6e-50 203.0 130 69.2
BcaNung01392 Brassica carinata HOM05D004904 ORTHO05D010762 2.4e-49 199.1 119 71.4
BraA09t36421Z Brassica rapa HOM05D004904 ORTHO05D010762 1.2e-48 196.8 130 67.7
A09p07710 Brassica napus HOM05D004904 ORTHO05D010762 1.5e-48 196.4 130 67.7
BolC2t12283H Brassica oleracea HOM05D004904 ORTHO05D010762 2.7e-45 185.7 133 60.2
A02p42370 Brassica napus HOM05D004904 ORTHO05D010762 3.5e-45 185.3 133 60.9
BraA02t09168Z Brassica rapa HOM05D004904 ORTHO05D010762 3.5e-45 185.3 133 60.9
Thhalv10005414m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 7.9e-45 184.1 134 56.7
Carub.0007s3224 Capsella rubella HOM05D004904 ORTHO05D010762 1.6e-42 176.4 134 53.7
Carub.0007s3223 Capsella rubella HOM05D004904 ORTHO05D010762 3.7e-42 175.3 131 55.0
CARHR057800 Cardamine hirsuta HOM05D004904 ORTHO05D010762 8.2e-42 174.1 136 55.1
CARHR216070 Cardamine hirsuta HOM05D004904 ORTHO05D010762 8.2e-42 174.1 137 57.7
CARHR216110 Cardamine hirsuta HOM05D004904 ORTHO05D010762 1.4e-41 173.3 134 59.0
Thhalv10005113m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 2.0e-40 169.5 134 54.5
CARHR216060 Cardamine hirsuta HOM05D004904 ORTHO05D010762 5.9e-40 167.9 132 56.8
A09p07740 Brassica napus HOM05D004904 ORTHO05D010762 2.7e-37 159.1 132 54.5
C09p08620 Brassica napus HOM05D004904 ORTHO05D010762 6.1e-37 157.9 103 63.1
Thhalv10005700m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 6.1e-37 157.9 134 47.8
AL7G45630 Arabidopsis lyrata HOM05D002460 ORTHO05D002716 1.8e-36 156.4 118 54.2
AL7G45640 Arabidopsis lyrata HOM05D004904 ORTHO05D010762 1.8e-36 156.4 127 50.4
CARHR112870 Cardamine hirsuta HOM05D004904 ORTHO05D010762 1.5e-35 153.3 132 52.3
CARHR220080 Cardamine hirsuta HOM05D004904 ORTHO05D012458 6.1e-29 131.3 133 46.6
CARHR219950 Cardamine hirsuta HOM05D004904 ORTHO05D010762 2.3e-28 129.4 108 51.9
BcaNung01393 Brassica carinata HOM05D004904 ORTHO05D010762 2.6e-27 125.9 78 66.7
AT1G51240 Arabidopsis thaliana HOM05D004904 ORTHO05D012458 1.1e-25 120.6 135 45.9
Carub.0001s4015 Capsella rubella HOM05D004904 ORTHO05D012458 1.4e-25 120.2 135 43.7
BcaC04g23409 Brassica carinata HOM05D004904 ORTHO05D010762 1.8e-25 119.8 80 61.2
Carub.0001s4014 Capsella rubella HOM05D004904 ORTHO05D012458 2.4e-25 119.4 137 40.1
CARHR102030 Cardamine hirsuta HOM05D004904 ORTHO05D012610 1.2e-24 117.1 138 43.5
AL1G59040 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 1.0e-23 114.0 125 44.0
Thhalv10015293m.g Eutrema salsugineum HOM05D004904 ORTHO05D015396 6.5e-23 111.3 137 38.7
AT1G51250 Arabidopsis thaliana HOM05D004904 ORTHO05D012458 1.4e-22 110.2 135 40.7
AL1G57680 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 3.2e-22 109.0 135 40.0
AT1G51230 Arabidopsis thaliana HOM05D004904 ORTHO05D012458 9.4e-22 107.5 124 41.9
AT1G09245 Arabidopsis thaliana HOM05D004904 ORTHO05D015396 1.2e-21 107.1 139 39.6
CARHR102040 Cardamine hirsuta HOM05D004904 ORTHO05D012610 2.7e-21 105.9 141 39.7
Carub.0003s2589 Capsella rubella HOM05D004904 ORTHO05D012610 6.1e-21 104.8 141 41.8
AL1G59050 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 1.0e-20 104.0 125 40.0
AL6G36930 Arabidopsis lyrata HOM05D004904 ORTHO05D010762 2.3e-20 102.8 127 42.5
BraA04t16123Z Brassica rapa HOM05D004904 ORTHO05D012458 2.3e-20 102.8 135 37.8
BolC4t25152H Brassica oleracea HOM05D004904 ORTHO05D012458 3.0e-20 102.4 135 37.8
AT5G39493 Arabidopsis thaliana HOM05D004904 ORTHO05D010762 6.7e-20 101.3 130 41.5
Carub.0002s0376 Capsella rubella HOM05D004904 ORTHO05D015396 6.7e-20 101.3 140 35.0
BcaB01g02770 Brassica carinata HOM05D004904 ORTHO05D002833 8.8e-20 100.9 123 41.5
A06p47670 Brassica napus HOM05D004904 ORTHO05D002833 1.1e-19 100.5 136 41.2
BraA06t27634Z Brassica rapa HOM05D004904 ORTHO05D002833 1.1e-19 100.5 136 41.2
A03p28790 Brassica napus HOM05D004904 ORTHO05D002833 2.0e-19 99.8 123 41.5
C03p34800 Brassica napus HOM05D004904 ORTHO05D002833 2.0e-19 99.8 123 41.5
BraA03t12076Z Brassica rapa HOM05D004904 ORTHO05D002833 2.0e-19 99.8 123 41.5
CARHR041320 Cardamine hirsuta HOM05D004904 ORTHO05D012458 3.3e-19 99.0 140 39.3
Aa31LG3G3090 Aethionema arabicum HOM05D004904 ORTHO05D002833 4.4e-19 98.6 121 39.7
Carub.0007s2940 Capsella rubella HOM05D004904 ORTHO05D010762 4.4e-19 98.6 130 40.8
Thhalv10029361m.g Eutrema salsugineum HOM05D004904 ORTHO05D002833 4.4e-19 98.6 123 42.3
Carub.0007s2596 Capsella rubella HOM05D004904 ORTHO05D015396 5.7e-19 98.2 142 34.5
Carub.0001s4013 Capsella rubella HOM05D004904 ORTHO05D012458 7.4e-19 97.8 143 35.7
Thhalv10029524m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 9.7e-19 97.4 138 39.1
Aa31LG3G3080 Aethionema arabicum HOM05D004904 ORTHO05D002833 1.3e-18 97.1 110 41.8
C07p26380 Brassica napus HOM05D004904 ORTHO05D002833 1.7e-18 96.7 136 38.2
BolC7t43165H Brassica oleracea HOM05D004904 ORTHO05D002833 1.7e-18 96.7 136 38.2
C02p62250 Brassica napus HOM05D004904 ORTHO05D000101 8.2e-18 94.4 65 63.1
C04p56810 Brassica napus HOM05D003012 ORTHO05D002833 8.2e-18 94.4 134 39.6
BolC4t27213H Brassica oleracea HOM05D003012 ORTHO05D002833 8.2e-18 94.4 134 39.6
Carub.0003s0967 Capsella rubella HOM05D004904 ORTHO05D021430 8.2e-18 94.4 134 38.1
Thhalv10023047m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 8.2e-18 94.4 135 37.0
A03p28780 Brassica napus HOM05D004904 ORTHO05D002833 1.1e-17 94.0 123 40.7
Carub.0007s2927 Capsella rubella HOM05D004904 ORTHO05D010762 1.1e-17 94.0 132 35.6
C09p67280 Brassica napus HOM05D003012 ORTHO05D002833 1.8e-17 93.2 134 38.1
Carub.0007s2938 Capsella rubella HOM05D004904 ORTHO05D010762 1.8e-17 93.2 137 35.8
AL3G21820 Arabidopsis lyrata HOM05D004904 ORTHO05D021430 5.3e-17 91.7 132 36.4
A04p21020 Brassica napus HOM05D003012 ORTHO05D002833 9.1e-17 90.9 134 38.8
C08p44310 Brassica napus HOM05D004904 ORTHO05D012458 9.1e-17 90.9 132 37.9
BolC8t51974H Brassica oleracea HOM05D004904 ORTHO05D012458 9.1e-17 90.9 132 37.9
BraA04t17670Z Brassica rapa HOM05D003012 ORTHO05D002833 9.1e-17 90.9 134 38.8
AT2G04115 Arabidopsis thaliana HOM05D004904 ORTHO05D012610 1.6e-16 90.1 149 36.9
Aa31LG3G3070 Aethionema arabicum HOM05D004904 ORTHO05D002833 2.6e-16 89.4 108 39.8
BcaC07g41901 Brassica carinata HOM05D004904 ORTHO05D015396 2.6e-16 89.4 115 40.9
BcaC07g41902 Brassica carinata HOM05D004904 ORTHO05D015396 2.6e-16 89.4 115 40.9
A01p24640 Brassica napus HOM05D004904 ORTHO05D002833 2.6e-16 89.4 134 34.3
AT3G10455 Arabidopsis thaliana HOM05D004904 ORTHO05D021430 3.5e-16 89.0 134 35.8
C08p49560 Brassica napus HOM05D004904 ORTHO05D015396 5.9e-16 88.2 147 35.4
BolC8t52492H Brassica oleracea HOM05D004904 ORTHO05D015396 5.9e-16 88.2 147 35.4
A04p25490 Brassica napus HOM05D003012 ORTHO05D002833 1.3e-15 87.0 132 37.1
BraA04t18052Z Brassica rapa HOM05D003012 ORTHO05D002833 1.3e-15 87.0 132 37.1
C08p44250 Brassica napus HOM05D004904 ORTHO05D012458 1.7e-15 86.7 132 34.8
C04p62630 Brassica napus HOM05D003012 ORTHO05D002833 2.2e-15 86.3 133 38.3
BraA09t41444Z Brassica rapa HOM05D004904 ORTHO05D012458 2.9e-15 85.9 132 36.4
BraA09t41446Z Brassica rapa HOM05D004904 ORTHO05D012458 2.9e-15 85.9 132 34.8
A03p28810 Brassica napus HOM05D004904 ORTHO05D002833 3.8e-15 85.5 134 35.1
Aa31LG11G9250 Aethionema arabicum HOM05D004904 ORTHO05D002833 1.1e-14 84.0 127 34.6
BolC8t51971H Brassica oleracea HOM05D004904 ORTHO05D012458 1.1e-14 84.0 122 34.4
Aa31LG3G3060 Aethionema arabicum HOM05D004904 ORTHO05D002833 1.5e-14 83.6 105 38.1
A03p28800 Brassica napus HOM05D000042 ORTHO05D000028 1.9e-14 83.2 118 36.4
BraA03t12077Z Brassica rapa HOM05D004904 ORTHO05D002833 1.9e-14 83.2 134 34.3
Carub.0003s0968 Capsella rubella HOM05D003012 ORTHO05D002833 2.5e-14 82.8 133 36.1
BraA09t41901Z Brassica rapa HOM05D004904 ORTHO05D015396 3.2e-14 82.4 149 35.6
Thhalv10029508m.g Eutrema salsugineum HOM05D004904 ORTHO05D002833 3.2e-14 82.4 99 40.4
Sp6g07620 Schrenkiella parvula HOM05D004904 ORTHO05D002833 3.2e-14 82.4 129 34.9
AL3G46890 Arabidopsis lyrata HOM05D004904 ORTHO05D010762 4.2e-14 82.0 136 34.6
Thhalv10009624m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 9.4e-14 80.9 136 34.6
BcaC01g04697 Brassica carinata HOM05D004904 ORTHO05D002833 1.2e-13 80.5 124 35.5
Thhalv10023818m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 1.2e-13 80.5 117 38.5
Aa31LG3G3320 Aethionema arabicum HOM05D003012 ORTHO05D002833 1.6e-13 80.1 120 39.2
BolC3t15792H Brassica oleracea HOM05D004904 ORTHO05D002833 1.6e-13 80.1 134 32.1
Aa31LG3G3270 Aethionema arabicum HOM05D003012 ORTHO05D002833 2.1e-13 79.7 118 36.4
BcaNung01396 Brassica carinata HOM05D004904 ORTHO05D010762 2.1e-13 79.7 70 48.6
Carub.0007s2936 Capsella rubella HOM05D004904 ORTHO05D010762 2.1e-13 79.7 131 32.1
Thhalv10026508m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 2.1e-13 79.7 143 30.8
Aa31LG3G3260 Aethionema arabicum HOM05D003012 ORTHO05D002833 2.7e-13 79.3 117 35.9
C03p34820 Brassica napus HOM05D000042 ORTHO05D000028 3.6e-13 79.0 119 33.6
Carub.0001s4073 Capsella rubella HOM05D003012 ORTHO05D002833 6.1e-13 78.2 132 32.6
Aa31LG3G3310 Aethionema arabicum HOM05D003012 ORTHO05D002833 8.0e-13 77.8 100 41.0
CARHR084960 Cardamine hirsuta HOM05D003012 ORTHO05D002833 8.0e-13 77.8 120 34.2
C06p30060 Brassica napus HOM05D004904 ORTHO05D012610 1.4e-12 77.0 125 37.6
BolC6t38167H Brassica oleracea HOM05D004904 ORTHO05D012610 1.4e-12 77.0 125 37.6
Thhalv10002784m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 1.4e-12 77.0 135 31.1
Carub.0004s0236 Capsella rubella HOM05D003012 ORTHO05D002833 2.3e-12 76.3 115 36.5
BolC6t38173H Brassica oleracea HOM05D004904 ORTHO05D012610 6.7e-12 74.7 147 34.0
A07p27280 Brassica napus HOM05D004904 ORTHO05D012610 8.8e-12 74.3 125 36.0
BraA07t30371Z Brassica rapa HOM05D004904 ORTHO05D012610 8.8e-12 74.3 125 36.0
Aa31LG3G3250 Aethionema arabicum HOM05D003012 ORTHO05D002833 1.2e-11 73.9 123 35.0
C06p30120 Brassica napus HOM05D004904 ORTHO05D012610 1.2e-11 73.9 120 36.7
AT2G23142 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 1.5e-11 73.6 115 34.8
Thhalv10000458m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 1.5e-11 73.6 138 33.3
Thhalv10002725m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 2.6e-11 72.8 133 32.3
A03p36000 Brassica napus HOM05D020264 ORTHO05D033075 3.3e-11 72.4 136 36.0
BraA03t12772Z Brassica rapa HOM05D020264 ORTHO05D033075 3.3e-11 72.4 136 36.0
Thhalv10003328m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 4.4e-11 72.0 113 37.2
BolC3t16633H Brassica oleracea HOM05D020264 ORTHO05D033075 5.7e-11 71.6 135 35.6
THA.LOC104816435 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 1.3e-10 70.5 135 31.1
BolC2t07254H Brassica oleracea HOM05D004904 ORTHO05D012993 1.7e-10 70.1 99 41.4
AL2G29420 Arabidopsis lyrata HOM05D004904 ORTHO05D012993 2.8e-10 69.3 142 31.7
A02p22640 Brassica napus HOM05D011693 ORTHO05D040107 2.8e-10 69.3 145 31.0
BraA04t18436Z Brassica rapa HOM05D003012 ORTHO05D002833 2.8e-10 69.3 129 34.1
THA.LOC104816438 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 3.7e-10 68.9 135 30.4
AL3G46880 Arabidopsis lyrata HOM05D004904 ORTHO05D080488 4.8e-10 68.6 133 31.6
C07p61990 Brassica napus HOM05D004904 ORTHO05D027820 4.8e-10 68.6 142 33.1
C07p62000 Brassica napus HOM05D004904 ORTHO05D027820 4.8e-10 68.6 142 33.1
BolC7t46619H Brassica oleracea HOM05D004904 ORTHO05D027820 4.8e-10 68.6 142 33.1
CARHR102930 Cardamine hirsuta HOM05D004904 ORTHO05D012993 8.2e-10 67.8 104 34.6
BcaC08g45375 Brassica carinata HOM05D004904 ORTHO05D012610 1.1e-09 67.4 115 37.4
BraA07t30372Z Brassica rapa HOM05D004904 ORTHO05D012610 1.4e-09 67.0 143 31.5
CARHR274150 Cardamine hirsuta HOM05D004904 ORTHO05D012993 1.8e-09 66.6 104 33.7
BcaB02g08008 Brassica carinata HOM05D003012 ORTHO05D002833 2.4e-09 66.2 112 36.6
A07p27310 Brassica napus HOM05D004904 ORTHO05D012610 2.4e-09 66.2 121 33.9
Thhalv10026501m.g Eutrema salsugineum HOM05D004904 ORTHO05D012458 2.4e-09 66.2 146 30.8
AT5G38440 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 3.1e-09 65.9 112 34.8
Thhalv10014983m.g Eutrema salsugineum HOM05D004904 ORTHO05D012993 4.1e-09 65.5 145 31.7
C07p62020 Brassica napus HOM05D004904 ORTHO05D012458 5.3e-09 65.1 138 32.6
BcaB05g25172 Brassica carinata HOM05D011693 ORTHO05D023959 7.0e-09 64.7 137 29.2
A09p65560 Brassica napus HOM05D004904 ORTHO05D015396 1.2e-08 63.9 81 44.4
C08p49610 Brassica napus HOM05D004904 ORTHO05D015396 2.7e-08 62.8 81 44.4
THA.LOC104816439 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 2.7e-08 62.8 115 33.0
C07p62010 Brassica napus HOM05D004904 ORTHO05D027820 3.5e-08 62.4 127 32.3
Carub.0006s0330 Capsella rubella HOM05D003012 ORTHO05D002833 3.5e-08 62.4 135 28.1
Thhalv10002162m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 7.7e-08 61.2 139 29.5
Carub.0003s2793 Capsella rubella HOM05D003012 ORTHO05D002833 1.3e-07 60.5 131 30.5
THA.LOC104816680 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 1.3e-07 60.5 99 36.4
AL1G49150 Arabidopsis lyrata HOM05D004904 ORTHO05D018426 1.7e-07 60.1 145 29.7
C07p62040 Brassica napus HOM05D004904 ORTHO05D012458 2.9e-07 59.3 139 30.9
BraA02t05833Z Brassica rapa HOM05D012090 ORTHO05D012993 2.9e-07 59.3 104 31.7
Sp1g10390 Schrenkiella parvula HOM05D003012 ORTHO05D002833 2.9e-07 59.3 102 33.3
BolC7t43818H Brassica oleracea HOM05D012418 ORTHO05D012993 5.0e-07 58.5 112 32.1
RcHm_v2.0_Chr3g0448331 Rosa chinensis HOM05D000256 ORTHO05D000119 5.0e-07 58.5 104 31.7
Sp5g23990 Schrenkiella parvula HOM05D004904 ORTHO05D021430 5.0e-07 58.5 134 25.4
THA.LOC104816440 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 5.0e-07 58.5 116 33.6
FAN10G1492 Fragaria x ananassa HOM05D000256 ORTHO05D000119 1.1e-06 57.4 138 30.4
Aa31LG3G4420 Aethionema arabicum HOM05D004904 ORTHO05D002833 2.5e-06 56.2 94 28.7
FAN06G4947 Fragaria x ananassa HOM05D000256 ORTHO05D000119 4.2e-06 55.5 129 30.2


User provided reference genes

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