Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p08620 Brassica napus HOM05D004904 ORTHO05D010762 2.3e-65 251.9 114 100.0
BcaC04g23408 Brassica carinata HOM05D004904 ORTHO05D010762 5.0e-52 207.6 105 89.5
C09p08630 Brassica napus HOM05D004904 ORTHO05D010762 5.0e-52 207.6 105 89.5
BolC9t53774H Brassica oleracea HOM05D004904 ORTHO05D010762 5.0e-52 207.6 105 89.5
A09p07710 Brassica napus HOM05D004904 ORTHO05D010762 7.3e-51 203.8 107 87.9
BraA09t36421Z Brassica rapa HOM05D004904 ORTHO05D010762 7.3e-51 203.8 107 87.9
BcaC04g23409 Brassica carinata HOM05D004904 ORTHO05D010762 8.3e-47 190.3 86 100.0
A10p15680 Brassica napus HOM05D004904 ORTHO05D010762 1.2e-40 169.9 103 67.0
BraA10t43666Z Brassica rapa HOM05D004904 ORTHO05D010762 1.2e-40 169.9 103 67.0
C09p50630 Brassica napus HOM05D004904 ORTHO05D010762 5.8e-40 167.5 103 67.0
BolC9t57916H Brassica oleracea HOM05D004904 ORTHO05D010762 5.8e-40 167.5 103 67.0
C09p08640 Brassica napus HOM05D004904 ORTHO05D010762 2.9e-39 165.2 103 66.0
BolC9t53775H Brassica oleracea HOM05D004904 ORTHO05D010762 2.9e-39 165.2 103 66.0
Carub.0007s3223 Capsella rubella HOM05D004904 ORTHO05D010762 3.7e-39 164.9 107 68.2
BcaNung01393 Brassica carinata HOM05D004904 ORTHO05D010762 4.1e-38 161.4 86 87.2
A09p07760 Brassica napus HOM05D004904 ORTHO05D010762 5.4e-38 161.0 103 65.0
BraA09t36424Z Brassica rapa HOM05D004904 ORTHO05D010762 5.4e-38 161.0 103 65.0
BcaNung01392 Brassica carinata HOM05D004904 ORTHO05D010762 3.5e-37 158.3 103 63.1
BcaC04g23406 Brassica carinata HOM05D004904 ORTHO05D010762 4.6e-37 157.9 103 63.1
C09p08660 Brassica napus HOM05D004904 ORTHO05D010762 4.6e-37 157.9 103 63.1
BolC9t53777H Brassica oleracea HOM05D004904 ORTHO05D010762 4.6e-37 157.9 103 63.1
A09p07720 Brassica napus HOM05D004904 ORTHO05D010762 6.0e-37 157.5 103 63.1
AL7G45640 Arabidopsis lyrata HOM05D004904 ORTHO05D010762 2.3e-36 155.6 107 62.6
BraA09t36422Z Brassica rapa HOM05D004904 ORTHO05D010762 3.9e-36 154.8 103 63.1
BolC2t12283H Brassica oleracea HOM05D004904 ORTHO05D010762 2.1e-34 149.1 103 60.2
BcaB06g25859 Brassica carinata HOM05D004904 ORTHO05D010762 8.1e-34 147.1 101 61.4
A02p42370 Brassica napus HOM05D004904 ORTHO05D010762 1.1e-33 146.7 103 59.2
BraA02t09168Z Brassica rapa HOM05D004904 ORTHO05D010762 1.1e-33 146.7 103 59.2
Carub.0007s3224 Capsella rubella HOM05D004904 ORTHO05D010762 1.1e-33 146.7 107 60.7
Thhalv10005414m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 6.8e-33 144.1 103 58.3
AL7G45630 Arabidopsis lyrata HOM05D002460 ORTHO05D002716 6.4e-31 137.5 95 61.1
CARHR216110 Cardamine hirsuta HOM05D004904 ORTHO05D010762 7.1e-30 134.0 103 56.3
A09p07740 Brassica napus HOM05D004904 ORTHO05D010762 6.0e-29 131.0 107 53.3
CARHR057800 Cardamine hirsuta HOM05D004904 ORTHO05D010762 1.0e-28 130.2 107 54.2
Thhalv10005113m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 1.7e-28 129.4 103 50.5
CARHR216070 Cardamine hirsuta HOM05D004904 ORTHO05D010762 8.6e-28 127.1 103 50.5
CARHR112870 Cardamine hirsuta HOM05D004904 ORTHO05D010762 1.5e-27 126.3 101 53.5
CARHR216060 Cardamine hirsuta HOM05D004904 ORTHO05D010762 6.2e-26 120.9 107 50.5
Thhalv10005700m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 1.1e-25 120.2 103 51.5
BcaNung01396 Brassica carinata HOM05D004904 ORTHO05D010762 1.3e-23 113.2 73 74.0
CARHR219950 Cardamine hirsuta HOM05D004904 ORTHO05D010762 8.4e-23 110.5 103 45.6
BraA04t16123Z Brassica rapa HOM05D004904 ORTHO05D012458 6.4e-15 84.3 110 40.0
BolC4t25152H Brassica oleracea HOM05D004904 ORTHO05D012458 1.1e-14 83.6 106 39.6
CARHR220080 Cardamine hirsuta HOM05D004904 ORTHO05D012458 3.2e-14 82.0 103 40.8
CARHR102040 Cardamine hirsuta HOM05D004904 ORTHO05D012610 9.3e-14 80.5 107 41.1
CARHR102030 Cardamine hirsuta HOM05D004904 ORTHO05D012610 1.6e-13 79.7 107 41.1
Carub.0002s0376 Capsella rubella HOM05D004904 ORTHO05D015396 7.9e-13 77.4 103 36.9
A01p24640 Brassica napus HOM05D004904 ORTHO05D002833 1.8e-12 76.3 87 40.2
AT1G51230 Arabidopsis thaliana HOM05D004904 ORTHO05D012458 3.0e-12 75.5 105 37.1
Aa31LG11G9250 Aethionema arabicum HOM05D004904 ORTHO05D002833 3.9e-12 75.1 99 38.4
Carub.0007s2596 Capsella rubella HOM05D004904 ORTHO05D015396 3.9e-12 75.1 100 37.0
Thhalv10015293m.g Eutrema salsugineum HOM05D004904 ORTHO05D015396 3.9e-12 75.1 103 35.0
A03p28800 Brassica napus HOM05D000042 ORTHO05D000028 5.1e-12 74.7 88 38.6
BraA03t12077Z Brassica rapa HOM05D004904 ORTHO05D002833 5.1e-12 74.7 88 38.6
BraA09t41444Z Brassica rapa HOM05D004904 ORTHO05D012458 1.1e-11 73.6 95 37.9
Carub.0003s2589 Capsella rubella HOM05D004904 ORTHO05D012610 1.9e-11 72.8 106 38.7
C08p44250 Brassica napus HOM05D004904 ORTHO05D012458 2.5e-11 72.4 95 36.8
BolC8t51971H Brassica oleracea HOM05D004904 ORTHO05D012458 2.5e-11 72.4 95 36.8
Thhalv10029361m.g Eutrema salsugineum HOM05D004904 ORTHO05D002833 2.5e-11 72.4 89 39.3
BraA09t41446Z Brassica rapa HOM05D004904 ORTHO05D012458 3.3e-11 72.0 95 35.8
BcaC07g41901 Brassica carinata HOM05D004904 ORTHO05D015396 4.3e-11 71.6 107 37.4
BcaC07g41902 Brassica carinata HOM05D004904 ORTHO05D015396 4.3e-11 71.6 107 37.4
AT1G09245 Arabidopsis thaliana HOM05D004904 ORTHO05D015396 5.6e-11 71.2 103 34.0
AT5G39493 Arabidopsis thaliana HOM05D004904 ORTHO05D010762 5.6e-11 71.2 103 36.9
BcaB01g02770 Brassica carinata HOM05D004904 ORTHO05D002833 5.6e-11 71.2 87 37.9
C08p49560 Brassica napus HOM05D004904 ORTHO05D015396 5.6e-11 71.2 107 37.4
BolC8t52492H Brassica oleracea HOM05D004904 ORTHO05D015396 5.6e-11 71.2 107 37.4
AL6G36930 Arabidopsis lyrata HOM05D004904 ORTHO05D010762 7.4e-11 70.9 108 33.3
A03p28790 Brassica napus HOM05D004904 ORTHO05D002833 7.4e-11 70.9 87 37.9
C03p34800 Brassica napus HOM05D004904 ORTHO05D002833 7.4e-11 70.9 87 37.9
BraA03t12076Z Brassica rapa HOM05D004904 ORTHO05D002833 7.4e-11 70.9 87 37.9
Aa31LG3G3060 Aethionema arabicum HOM05D004904 ORTHO05D002833 9.6e-11 70.5 87 42.5
Thhalv10023047m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 9.6e-11 70.5 104 36.5
BraA09t41901Z Brassica rapa HOM05D004904 ORTHO05D015396 1.6e-10 69.7 109 38.5
Carub.0001s4013 Capsella rubella HOM05D004904 ORTHO05D012458 1.6e-10 69.7 79 41.8
Carub.0001s4014 Capsella rubella HOM05D004904 ORTHO05D012458 2.1e-10 69.3 108 32.4
AL3G21820 Arabidopsis lyrata HOM05D004904 ORTHO05D021430 2.8e-10 68.9 103 35.9
C08p44310 Brassica napus HOM05D004904 ORTHO05D012458 2.8e-10 68.9 96 33.3
BolC8t51974H Brassica oleracea HOM05D004904 ORTHO05D012458 2.8e-10 68.9 96 33.3
A03p28810 Brassica napus HOM05D004904 ORTHO05D002833 3.6e-10 68.6 84 36.9
AL1G59040 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 4.8e-10 68.2 108 34.3
Thhalv10029508m.g Eutrema salsugineum HOM05D004904 ORTHO05D002833 4.8e-10 68.2 73 46.6
BcaC01g04697 Brassica carinata HOM05D004904 ORTHO05D002833 6.2e-10 67.8 87 36.8
C03p34820 Brassica napus HOM05D000042 ORTHO05D000028 6.2e-10 67.8 87 36.8
BolC3t15792H Brassica oleracea HOM05D004904 ORTHO05D002833 6.2e-10 67.8 87 36.8
Carub.0007s2940 Capsella rubella HOM05D004904 ORTHO05D010762 6.2e-10 67.8 105 35.2
Aa31LG3G3090 Aethionema arabicum HOM05D004904 ORTHO05D002833 8.1e-10 67.4 87 36.8
AT1G51240 Arabidopsis thaliana HOM05D004904 ORTHO05D012458 8.1e-10 67.4 108 34.3
A03p57360 Brassica napus HOM05D003012 ORTHO05D002833 1.8e-09 66.2 104 38.5
BraA03t14802Z Brassica rapa HOM05D003012 ORTHO05D002833 1.8e-09 66.2 104 38.5
Aa31LG3G3080 Aethionema arabicum HOM05D004904 ORTHO05D002833 2.4e-09 65.9 87 36.8
A03p28780 Brassica napus HOM05D004904 ORTHO05D002833 2.4e-09 65.9 87 36.8
A06p47670 Brassica napus HOM05D004904 ORTHO05D002833 2.4e-09 65.9 102 33.3
C09p67280 Brassica napus HOM05D003012 ORTHO05D002833 2.4e-09 65.9 101 35.6
BraA06t27634Z Brassica rapa HOM05D004904 ORTHO05D002833 2.4e-09 65.9 102 33.3
AT2G04115 Arabidopsis thaliana HOM05D004904 ORTHO05D012610 3.1e-09 65.5 107 32.7
AT3G10455 Arabidopsis thaliana HOM05D004904 ORTHO05D021430 3.1e-09 65.5 106 33.0
AL3G46890 Arabidopsis lyrata HOM05D004904 ORTHO05D010762 5.3e-09 64.7 108 37.0
Thhalv10029524m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 5.3e-09 64.7 109 33.9
Aa31LG3G3070 Aethionema arabicum HOM05D004904 ORTHO05D002833 1.2e-08 63.5 88 37.5
AT1G51250 Arabidopsis thaliana HOM05D004904 ORTHO05D012458 1.2e-08 63.5 108 32.4
Carub.0001s4015 Capsella rubella HOM05D004904 ORTHO05D012458 1.2e-08 63.5 77 39.0
Carub.0007s2938 Capsella rubella HOM05D004904 ORTHO05D010762 1.2e-08 63.5 103 32.0
AL1G57680 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 1.5e-08 63.2 106 32.1
C04p56810 Brassica napus HOM05D003012 ORTHO05D002833 1.5e-08 63.2 101 33.7
BolC4t27213H Brassica oleracea HOM05D003012 ORTHO05D002833 1.5e-08 63.2 101 33.7
AL1G49830 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 2.6e-08 62.4 102 40.2
AL3G46880 Arabidopsis lyrata HOM05D004904 ORTHO05D080488 2.6e-08 62.4 107 31.8
C07p26380 Brassica napus HOM05D004904 ORTHO05D002833 2.6e-08 62.4 102 30.4
BolC7t43165H Brassica oleracea HOM05D004904 ORTHO05D002833 2.6e-08 62.4 102 30.4
Thhalv10017589m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 3.4e-08 62.0 100 33.0
Sp6g07620 Schrenkiella parvula HOM05D004904 ORTHO05D002833 5.8e-08 61.2 93 31.2
AL1G59050 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 7.6e-08 60.8 108 32.4
C02p62250 Brassica napus HOM05D004904 ORTHO05D000101 7.6e-08 60.8 44 52.3
Carub.0007s2927 Capsella rubella HOM05D004904 ORTHO05D010762 1.7e-07 59.7 103 32.0
CARHR084960 Cardamine hirsuta HOM05D003012 ORTHO05D002833 1.7e-07 59.7 94 33.0
CARHR041320 Cardamine hirsuta HOM05D004904 ORTHO05D012458 2.2e-07 59.3 108 33.3
Aa31LG3G3250 Aethionema arabicum HOM05D003012 ORTHO05D002833 3.8e-07 58.5 89 32.6
AT2G06090 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 3.8e-07 58.5 84 36.9
A04p25490 Brassica napus HOM05D003012 ORTHO05D002833 1.4e-06 56.6 88 31.8
C04p62630 Brassica napus HOM05D003012 ORTHO05D002833 1.4e-06 56.6 88 31.8
BraA04t18052Z Brassica rapa HOM05D003012 ORTHO05D002833 1.4e-06 56.6 88 31.8


User provided reference genes

Program Settings