Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 4.8e-71 272.3 328 100.0
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 4.5e-69 265.8 328 98.8
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 2.2e-68 263.5 328 98.8
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 4.6e-66 255.8 327 97.2
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 8.7e-65 251.5 327 96.3
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 1.5e-64 250.8 347 80.4
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 3.3e-64 249.6 327 96.3
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 3.3e-64 249.6 327 96.3
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.3e-63 247.7 327 95.1
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.2e-63 246.9 327 95.4
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.4e-62 243.4 327 94.5
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 4.1e-62 242.7 327 93.9
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 9.1e-62 241.5 327 94.2
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 9.1e-62 241.5 336 82.1
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 1.2e-61 241.1 327 94.5
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 4.5e-61 239.2 343 79.6
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 2.2e-60 236.9 331 94.0
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 6.5e-60 235.3 327 93.9
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.5e-56 224.2 322 91.6
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 5.3e-54 215.7 327 89.3
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 1.5e-53 214.2 321 91.0
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 4.5e-53 212.6 319 90.6
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 4.5e-53 212.6 327 86.5
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.7e-52 210.7 340 80.6
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.7e-52 210.7 321 89.7
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 1.7e-52 210.7 319 90.0
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 6.5e-52 208.8 327 86.9
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 8.5e-52 208.4 321 87.5
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.4e-51 207.6 321 89.1
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.4e-51 207.6 327 87.2
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 1.4e-51 207.6 328 88.4
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.5e-51 206.8 321 89.1
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 2.5e-51 206.8 324 90.1
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 3.2e-51 206.5 328 85.1
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.2e-51 206.1 317 91.5
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 5.5e-51 205.7 328 88.1
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 5.5e-51 205.7 319 89.7
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 5.5e-51 205.7 316 89.6
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 7.2e-51 205.3 319 89.7
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 7.2e-51 205.3 318 91.8
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.2e-51 205.3 321 88.8
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 7.2e-51 205.3 316 90.8
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 9.4e-51 204.9 319 90.9
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 1.2e-50 204.5 320 91.2
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 1.2e-50 204.5 319 87.8
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 1.6e-50 204.1 318 90.6
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 1.6e-50 204.1 316 86.7
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 2.1e-50 203.8 328 88.4
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.1e-50 203.8 319 90.9
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 2.7e-50 203.4 309 92.6
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 2.7e-50 203.4 319 89.7
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.7e-50 203.4 321 86.3
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 2.7e-50 203.4 321 90.3
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 3.6e-50 203.0 311 92.0
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 4.7e-50 202.6 309 92.6
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 4.7e-50 202.6 319 88.4
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 4.7e-50 202.6 321 90.3
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 4.7e-50 202.6 321 90.3
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 6.1e-50 202.2 308 92.5
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 6.1e-50 202.2 329 87.8
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 7.9e-50 201.8 324 87.0
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 1.0e-49 201.4 319 90.3
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.0e-49 201.4 321 90.3
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 1.0e-49 201.4 319 90.3
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 1.4e-49 201.1 312 90.4
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 1.4e-49 201.1 312 90.4
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 1.4e-49 201.1 309 91.9
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.8e-49 200.7 324 88.9
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 2.3e-49 200.3 321 86.9
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.3e-49 200.3 324 88.6
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 3.9e-49 199.5 321 90.0
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 3.9e-49 199.5 326 79.8
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 6.7e-49 198.7 318 89.3
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 6.7e-49 198.7 321 90.0
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 6.7e-49 198.7 322 90.1
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 8.8e-49 198.4 328 88.7
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 8.8e-49 198.4 328 88.7
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 8.8e-49 198.4 321 88.5
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 8.8e-49 198.4 325 88.3
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 8.8e-49 198.4 322 89.8
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 1.5e-48 197.6 324 88.6
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 2.0e-48 197.2 320 89.7
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 2.6e-48 196.8 321 87.9
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.6e-48 196.8 322 89.4
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.6e-48 196.8 322 89.4
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 3.3e-48 196.4 318 89.0
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 4.4e-48 196.1 319 89.7
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 5.7e-48 195.7 319 88.7
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 1.7e-47 194.1 321 88.8
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 2.8e-47 193.4 312 90.7
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 2.8e-47 193.4 331 86.7
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 2.8e-47 193.4 310 90.3
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 2.8e-47 193.4 320 86.2
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 3.7e-47 193.0 321 75.1
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 3.7e-47 193.0 320 89.1
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 4.8e-47 192.6 319 88.1
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 8.2e-47 191.8 326 86.8
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 1.4e-46 191.0 321 89.1
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.8e-46 190.7 317 88.0
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.1e-46 189.5 323 86.4
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 4.1e-46 189.5 320 88.1
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 9.1e-46 188.3 236 91.5
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 1.2e-45 188.0 238 89.5
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 1.6e-45 187.6 305 91.1
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.6e-45 187.6 241 88.0
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 2.6e-45 186.8 241 86.7
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 2.6e-45 186.8 305 91.1
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 3.5e-45 186.4 321 88.2
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 4.5e-45 186.0 341 59.5
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 7.7e-45 185.3 297 91.6
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.9e-44 183.3 349 63.0
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 1.5e-43 181.0 296 90.2
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 1.9e-43 180.6 361 65.1
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.5e-43 180.3 321 79.4
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.5e-43 180.3 321 79.4
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 6.1e-42 175.6 316 86.7
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 1.8e-41 174.1 101 83.2
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.0e-41 173.3 319 84.0
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.0e-41 173.3 319 84.0
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 4.0e-41 172.9 327 81.7
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 5.2e-41 172.6 241 68.9
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 6.7e-41 172.2 326 83.7
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 8.8e-41 171.8 320 83.4
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 2.6e-40 170.2 312 85.9
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 4.4e-40 169.5 327 52.0
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 4.4e-40 169.5 348 81.3
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 5.7e-40 169.1 316 86.1
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.7e-39 167.5 94 85.1
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 2.8e-39 166.8 84 91.7
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 6.3e-39 165.6 95 83.2
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 6.3e-39 165.6 95 83.2
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 8.2e-39 165.2 94 85.1
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 8.2e-39 165.2 348 73.3
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.1e-38 164.9 98 80.6
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 1.1e-38 164.9 95 83.2
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.4e-38 164.5 320 85.3
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 5.3e-38 162.5 93 83.9
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 5.3e-38 162.5 341 79.2
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 5.3e-38 162.5 93 83.9
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 9.1e-38 161.8 328 81.7
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 9.1e-38 161.8 315 86.3
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.2e-37 161.4 80 95.0
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.6e-37 161.0 328 67.7
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.6e-37 161.0 93 81.7
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.6e-37 161.0 104 76.9
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 3.5e-37 159.8 221 91.0
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 5.9e-37 159.1 104 76.0
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 2.2e-36 157.1 102 77.5
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 6.5e-36 155.6 95 78.9
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 4.2e-35 152.9 318 80.5
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 4.2e-35 152.9 321 80.4
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.7e-34 150.2 238 81.9
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.7e-34 150.2 238 79.0
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 2.3e-33 147.1 238 81.1
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.8e-30 137.5 73 87.7
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 1.2e-29 134.8 241 77.2
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 6.5e-28 129.0 86 66.3
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 1.1e-27 128.3 304 79.3
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 5.2e-25 119.4 308 77.3
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 7.5e-24 115.5 74 77.0
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 5.0e-20 102.8 276 77.9
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.6e-19 99.4 65 73.8
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.2e-18 98.2 96 56.2
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 1.0e-17 95.1 50 82.0
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 4.0e-17 93.2 102 56.9
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.2e-16 91.7 64 62.5
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 3.4e-16 90.1 102 54.9
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 3.4e-16 90.1 64 62.5
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.7e-13 80.5 118 85.6
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 3.5e-13 80.1 50 76.0
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.3e-12 78.2 75 52.0
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 1.7e-12 77.8 50 80.0
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.3e-12 77.4 258 85.3
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 8.6e-12 75.5 48 79.2
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 9.5e-11 72.0 240 67.9
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 1.4e-09 68.2 118 46.6
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 3.1e-09 67.0 40 77.5
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 2.6e-08 63.9 40 77.5
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 2.2e-07 60.8 40 75.0
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 1.9e-06 57.8 40 70.0


User provided reference genes

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