Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 1.2e-82 310.1 187 100.0
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 3.0e-78 295.4 190 95.8
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 2.0e-77 292.7 177 100.0
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 1.2e-71 273.5 173 96.5
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 1.1e-69 266.9 171 95.3
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 2.3e-62 242.7 161 92.5
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 1.1e-61 240.4 173 87.3
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 2.8e-60 235.7 164 89.6
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.8e-59 233.0 157 89.8
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.5e-53 213.4 166 84.3
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.3e-49 200.3 165 80.6
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 5.0e-49 198.4 170 71.8
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 1.1e-48 197.2 164 80.5
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 3.2e-48 195.7 164 80.5
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 4.2e-48 195.3 164 79.9
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 4.2e-48 195.3 164 79.9
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 4.2e-48 195.3 165 78.2
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 5.5e-48 194.9 165 78.8
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 2.1e-47 193.0 167 76.0
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 8.0e-47 191.0 162 72.8
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 1.4e-46 190.3 162 79.0
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 2.3e-46 189.5 157 75.2
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 6.8e-46 188.0 156 73.7
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 1.2e-45 187.2 166 56.0
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.2e-45 187.2 164 71.3
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 5.7e-45 184.9 167 70.7
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 1.7e-44 183.3 157 72.0
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 2.8e-44 182.6 158 73.4
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 3.7e-44 182.2 159 74.8
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 3.7e-44 182.2 156 71.2
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 6.3e-44 181.4 153 73.2
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 2.4e-43 179.5 167 68.3
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 3.1e-43 179.1 154 72.1
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 4.1e-43 178.7 164 70.1
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 5.4e-43 178.3 167 73.7
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 2.7e-42 176.0 167 67.7
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 4.5e-42 175.3 164 69.5
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 1.3e-41 173.7 143 76.2
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.7e-41 173.3 154 70.8
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 5.0e-41 171.8 154 65.6
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 1.5e-40 170.2 165 66.1
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 4.3e-40 168.7 166 69.3
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 5.6e-40 168.3 156 69.2
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 9.5e-40 167.5 160 54.4
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 9.5e-40 167.5 154 69.5
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 9.5e-40 167.5 154 69.5
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.6e-39 166.8 160 54.4
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.6e-39 166.8 156 69.2
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 2.1e-39 166.4 166 68.1
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 2.8e-39 166.0 168 62.5
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 3.6e-39 165.6 160 53.8
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 4.7e-39 165.2 154 68.8
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 8.0e-39 164.5 141 73.0
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 3.0e-38 162.5 146 56.8
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 4.0e-38 162.2 157 63.1
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 8.9e-38 161.0 166 67.5
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 2.0e-37 159.8 227 41.0
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 7.5e-37 157.9 153 68.0
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 9.8e-37 157.5 163 50.9
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 2.2e-36 156.4 141 70.9
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 2.2e-36 156.4 151 67.5
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 8.3e-36 154.5 166 66.3
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 1.1e-35 154.1 156 64.7
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 3.2e-35 152.5 166 60.8
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 7.0e-35 151.4 157 49.0
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.0e-35 151.4 157 49.0
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.0e-35 151.4 157 49.0
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 2.7e-34 149.4 163 62.6
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 2.7e-34 149.4 139 68.3
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 2.7e-34 149.4 150 51.3
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 3.5e-34 149.1 175 48.0
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 3.5e-34 149.1 153 50.3
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.7e-33 146.7 157 47.8
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 3.9e-33 145.6 163 61.3
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 6.6e-33 144.8 164 58.5
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 8.6e-33 144.4 157 61.8
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.1e-32 144.1 167 64.1
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 1.5e-32 143.7 155 61.9
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 1.5e-32 143.7 164 60.4
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 1.9e-32 143.3 161 46.6
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 4.3e-32 142.1 167 58.1
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 5.6e-32 141.7 167 59.3
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 7.3e-32 141.4 162 58.6
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 9.5e-32 141.0 142 65.5
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 1.6e-31 140.2 167 44.3
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 2.1e-31 139.8 165 58.2
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 2.8e-31 139.4 165 58.2
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 2.8e-31 139.4 165 58.2
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.6e-31 139.0 157 45.9
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 3.6e-31 139.0 170 58.2
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 4.7e-31 138.7 165 44.2
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 6.2e-31 138.3 167 55.7
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 8.0e-31 137.9 166 58.4
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 1.0e-30 137.5 165 58.2
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 1.8e-30 136.7 167 58.7
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 1.8e-30 136.7 167 58.7
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 1.8e-30 136.7 157 60.5
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.8e-30 136.7 157 58.0
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.8e-30 136.7 169 45.0
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 2.3e-30 136.3 152 56.6
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 5.2e-30 135.2 165 55.8
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 1.5e-29 133.7 164 54.9
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 1.5e-29 133.7 157 54.8
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 3.4e-29 132.5 161 52.2
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 5.8e-29 131.7 152 57.9
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 5.8e-29 131.7 166 55.4
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 7.5e-29 131.3 166 56.0
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 1.3e-28 130.6 167 54.5
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 1.3e-28 130.6 165 55.8
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 1.7e-28 130.2 172 44.2
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 1.7e-28 130.2 156 62.8
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 2.2e-28 129.8 163 54.6
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 2.2e-28 129.8 167 54.5
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.9e-28 129.4 157 54.8
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 3.7e-28 129.0 167 53.9
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 3.7e-28 129.0 151 55.0
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 4.9e-28 128.6 75 76.0
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 4.9e-28 128.6 157 54.8
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 8.3e-28 127.9 157 53.5
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.1e-27 127.5 159 42.8
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 1.4e-27 127.1 155 56.8
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 3.2e-27 125.9 152 61.8
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 5.4e-27 125.2 154 53.2
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 5.4e-27 125.2 154 55.2
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 7.0e-27 124.8 154 57.8
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 7.0e-27 124.8 154 57.8
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 1.2e-26 124.0 139 48.2
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 2.0e-26 123.2 157 40.1
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 2.7e-26 122.9 163 52.1
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 2.7e-26 122.9 67 77.6
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 3.5e-26 122.5 159 40.3
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 3.0e-25 119.4 162 54.3
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 5.0e-25 118.6 151 58.9
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 5.0e-25 118.6 151 58.9
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.1e-24 117.5 155 41.3
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 1.5e-24 117.1 164 53.7
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.6e-23 113.6 156 57.7
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 2.3e-22 109.8 117 44.4
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 3.1e-22 109.4 145 56.6
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 7.5e-21 104.8 61 70.5
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 4.1e-19 99.0 114 64.0
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 2.5e-16 89.7 122 37.7
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 4.7e-15 85.5 119 37.8
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 8.1e-15 84.7 69 56.5
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 6.8e-14 81.6 123 37.4
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 5.8e-13 78.6 69 60.9
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 4.9e-12 75.5 110 36.4
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 1.1e-11 74.3 145 31.7
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 1.1e-11 74.3 111 35.1
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 4.1e-11 72.4 54 61.1


User provided reference genes

Program Settings