Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 9.0e-156 553.9 357 100.0
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 4.5e-147 525.0 342 100.0
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 9.3e-129 464.2 302 100.0
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 3.3e-126 455.7 302 92.7
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 3.3e-126 455.7 302 92.7
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 4.4e-110 402.1 339 82.6
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 1.0e-98 364.4 302 72.8
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 6.5e-98 361.7 302 72.2
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 4.4e-94 349.0 330 65.8
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 5.7e-94 348.6 303 71.9
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 7.7e-91 338.2 302 75.5
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 3.0e-79 299.7 362 61.9
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 1.4e-76 290.8 275 73.5
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 1.9e-73 280.4 289 55.4
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 7.3e-73 278.5 303 58.7
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 6.2e-72 275.4 274 57.3
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 8.0e-72 275.0 302 57.9
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.8e-71 273.9 304 53.3
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 7.5e-70 268.5 307 53.7
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 2.2e-69 266.9 301 52.8
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 2.0e-67 260.4 358 47.5
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 2.0e-67 260.4 303 56.1
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 3.5e-67 259.6 303 51.2
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 7.8e-67 258.5 309 51.8
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 7.8e-67 258.5 303 51.2
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 7.8e-67 258.5 308 51.3
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 1.3e-66 257.7 302 54.6
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 1.7e-66 257.3 319 51.1
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 1.7e-66 257.3 306 54.9
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 2.3e-66 256.9 305 63.0
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 5.6e-65 252.3 304 51.0
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 7.3e-65 251.9 301 51.8
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 7.3e-65 251.9 319 52.0
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 2.8e-64 250.0 322 50.6
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 4.7e-64 249.2 304 52.0
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 6.2e-64 248.8 287 49.5
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 6.2e-64 248.8 309 57.6
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 8.1e-64 248.4 305 52.1
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 1.8e-63 247.3 299 51.8
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 3.1e-63 246.5 275 54.5
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 3.1e-63 246.5 304 55.3
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 5.2e-63 245.7 291 52.6
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 1.5e-62 244.2 303 52.5
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 2.6e-62 243.4 302 52.0
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 5.8e-62 242.3 298 65.1
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 9.9e-62 241.5 310 51.6
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 1.3e-61 241.1 307 51.1
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 1.3e-61 241.1 309 51.5
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 1.3e-61 241.1 355 45.9
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 2.2e-61 240.4 308 46.8
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 3.7e-61 239.6 305 52.5
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 8.3e-61 238.4 322 49.1
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 1.1e-60 238.0 308 48.7
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.1e-60 238.0 306 46.7
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 1.4e-60 237.7 302 64.6
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 1.9e-60 237.3 316 49.1
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 1.9e-60 237.3 273 53.8
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 3.2e-60 236.5 339 45.4
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 5.4e-60 235.7 308 49.0
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 2.1e-59 233.8 318 49.4
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 1.0e-58 231.5 295 64.1
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 1.3e-58 231.1 303 60.1
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 1.1e-57 228.0 305 61.0
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.1e-57 228.0 305 48.9
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 1.1e-57 228.0 310 62.6
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 2.5e-57 226.9 311 47.3
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 4.3e-57 226.1 283 51.2
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 4.3e-57 226.1 277 52.7
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 7.3e-57 225.3 348 54.0
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 9.5e-57 224.9 308 50.0
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 9.5e-57 224.9 306 49.0
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 1.6e-56 224.2 306 48.7
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 2.1e-56 223.8 309 54.7
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 4.7e-56 222.6 309 54.4
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 1.1e-55 221.5 311 58.2
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 1.1e-55 221.5 299 45.8
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 1.4e-55 221.1 320 49.1
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.8e-55 220.7 302 60.3
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.8e-55 220.7 313 57.8
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 5.2e-55 219.2 302 59.9
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 8.9e-55 218.4 291 54.0
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.5e-54 217.6 301 60.8
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 2.0e-54 217.2 307 47.6
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 2.6e-54 216.9 257 51.8
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.6e-54 216.9 309 62.8
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 1.7e-53 214.2 306 48.4
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.7e-53 214.2 306 48.7
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 1.1e-52 211.5 322 46.3
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 2.4e-52 210.3 196 58.7
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 4.1e-52 209.5 307 45.3
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 6.0e-51 205.7 193 57.0
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 7.8e-51 205.3 322 45.7
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 1.7e-50 204.1 289 46.7
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 1.7e-50 204.1 307 56.7
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 1.7e-50 204.1 303 59.4
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 1.7e-50 204.1 303 59.4
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 8.6e-50 201.8 307 55.4
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 7.3e-49 198.7 305 56.1
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 1.4e-47 194.5 301 46.5
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 1.5e-46 191.0 222 53.2
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.5e-46 191.0 276 48.9
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 2.6e-46 190.3 335 43.3
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 4.4e-46 189.5 304 54.9
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 1.3e-45 188.0 305 46.2
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.4e-44 184.5 305 56.4
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 8.7e-42 175.3 309 54.0
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 3.3e-41 173.3 280 45.4
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 9.0e-39 165.2 348 37.6
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 1.7e-37 161.0 259 41.7
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 7.1e-36 155.6 189 45.0
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 3.4e-30 136.7 152 45.4
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 9.9e-30 135.2 108 67.6
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.1e-25 121.7 110 56.4
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.1e-24 117.5 105 56.2
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 2.8e-24 117.1 105 59.0
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 2.4e-23 114.0 151 54.3
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.2e-22 111.7 164 39.0
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.5e-22 111.3 189 38.1
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 1.9e-20 104.4 119 52.1
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 7.1e-20 102.4 175 44.6
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 1.2e-19 101.7 135 52.6
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 1.6e-19 101.3 137 41.6
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 2.8e-16 90.5 112 54.5
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 3.1e-15 87.0 71 71.8
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 1.1e-12 78.6 221 35.7
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 1.1e-12 78.6 45 84.4
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.4e-12 78.2 48 72.9
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 2.1e-11 74.3 220 35.0
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 8.2e-08 62.4 59 62.7
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 2.0e-06 57.8 58 50.0
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 3.4e-06 57.0 76 47.4


User provided reference genes

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