Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 2.4e-37 158.3 79 100.0
BolC9t53500H Brassica oleracea HOM05D004613 ORTHO05D006095 9.9e-23 109.8 54 98.1
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 3.1e-16 88.2 50 88.0
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 3.1e-16 88.2 52 86.5
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 5.3e-16 87.4 49 89.8
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 1.5e-15 85.9 50 86.0
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 2.6e-15 85.1 46 93.5
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 7.6e-15 83.6 50 84.0
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 2.2e-14 82.0 50 82.0
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 6.4e-14 80.5 50 80.0
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 8.4e-14 80.1 50 78.0
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 1.1e-13 79.7 49 81.6
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 1.9e-13 79.0 50 78.0
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 5.4e-13 77.4 50 74.0
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 9.3e-13 76.6 49 75.5
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 6.0e-12 73.9 46 80.4
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 1.0e-11 73.2 49 71.4
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 3.0e-11 71.6 50 64.0
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.1e-11 70.9 50 66.0
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 5.1e-11 70.9 49 69.4
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 5.1e-11 70.9 50 64.0
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 5.1e-11 70.9 50 64.0
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 6.7e-11 70.5 50 70.0
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 6.7e-11 70.5 50 64.0
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 6.7e-11 70.5 50 64.0
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 8.7e-11 70.1 50 66.0
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 8.7e-11 70.1 50 66.0
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 1.5e-10 69.3 50 68.0
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 1.5e-10 69.3 50 66.0
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 1.9e-10 68.9 49 69.4
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 1.9e-10 68.9 50 68.0
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 1.9e-10 68.9 50 64.0
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 2.5e-10 68.6 48 66.7
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.5e-10 68.6 46 67.4
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 2.5e-10 68.6 50 62.0
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.3e-10 68.2 46 67.4
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.3e-10 68.2 46 67.4
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 3.3e-10 68.2 49 63.3
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 3.3e-10 68.2 49 63.3
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 4.3e-10 67.8 50 64.0
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 4.3e-10 67.8 46 67.4
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 4.3e-10 67.8 53 62.3
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 4.3e-10 67.8 50 64.0
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 4.3e-10 67.8 50 64.0
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 5.6e-10 67.4 50 62.0
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 5.6e-10 67.4 50 64.0
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 5.6e-10 67.4 50 64.0
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 7.4e-10 67.0 49 61.2
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 7.4e-10 67.0 50 62.0
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 7.4e-10 67.0 50 62.0
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 7.4e-10 67.0 50 62.0
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 7.4e-10 67.0 50 62.0
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 9.6e-10 66.6 50 64.0
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 9.6e-10 66.6 50 64.0
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 9.6e-10 66.6 50 64.0
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 9.6e-10 66.6 50 62.0
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.6e-09 65.9 46 67.4
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 1.6e-09 65.9 46 65.2
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 2.1e-09 65.5 49 61.2
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 2.1e-09 65.5 46 65.2
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 2.1e-09 65.5 53 56.6
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 2.8e-09 65.1 50 62.0
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 2.8e-09 65.1 49 57.1
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 3.7e-09 64.7 50 58.0
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 3.7e-09 64.7 50 62.0
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 3.7e-09 64.7 49 59.2
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 6.2e-09 63.9 49 59.2
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 6.2e-09 63.9 50 60.0
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 6.2e-09 63.9 52 50.0
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 8.1e-09 63.5 49 57.1
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 8.1e-09 63.5 48 64.6
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 8.1e-09 63.5 50 62.0
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 8.1e-09 63.5 50 62.0
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 8.1e-09 63.5 50 54.0
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 8.1e-09 63.5 50 62.0
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 1.1e-08 63.2 49 57.1
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 1.8e-08 62.4 50 58.0
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 1.8e-08 62.4 49 57.1
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 5.3e-08 60.8 50 58.0
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 5.3e-08 60.8 49 59.2
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 9.0e-08 60.1 50 60.0
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 1.2e-07 59.7 49 55.1
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 2.0e-07 58.9 64 46.9
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 2.0e-07 58.9 50 56.0
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 9.9e-07 56.6 46 50.0
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 1.3e-06 56.2 47 57.4
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.7e-06 55.8 50 56.0
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.7e-06 55.8 50 56.0
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.7e-06 55.8 50 56.0
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.7e-06 55.8 50 56.0
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.7e-06 55.8 50 56.0
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.7e-06 55.8 50 56.0
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.7e-06 55.8 50 56.0
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 1.7e-06 55.8 51 56.9
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 1.7e-06 55.8 38 65.8
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 1.7e-06 55.8 51 54.9
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 1.7e-06 55.8 46 54.3
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 2.9e-06 55.1 39 64.1
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 3.8e-06 54.7 38 65.8
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 4.9e-06 54.3 39 61.5


User provided reference genes

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