Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 5.0e-115 417.9 234 100.0
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 1.2e-108 396.7 234 96.2
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 1.4e-104 383.3 261 86.6
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 2.6e-103 379.0 239 92.9
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 2.6e-103 379.0 239 92.9
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 6.6e-99 364.4 239 89.5
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 2.4e-88 329.3 246 81.7
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 3.5e-84 315.5 236 80.1
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 4.6e-84 315.1 246 77.2
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 7.8e-84 314.3 237 79.7
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 7.8e-84 314.3 237 79.7
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 6.6e-83 311.2 236 78.8
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 1.5e-82 310.1 247 75.7
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 4.3e-82 308.5 236 78.0
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 4.8e-81 305.1 243 77.0
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 8.1e-81 304.3 245 77.6
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 9.0e-80 300.8 242 76.0
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 7.1e-77 291.2 250 71.2
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 9.0e-72 274.2 245 68.6
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 4.6e-68 261.9 250 67.2
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 7.4e-66 254.6 228 67.1
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 1.8e-56 223.4 238 59.2
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 2.6e-55 219.5 237 57.4
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 2.2e-54 216.5 233 55.4
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 1.1e-53 214.2 226 56.2
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 2.5e-53 213.0 244 54.9
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 7.2e-53 211.5 226 56.6
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 1.2e-52 210.7 219 56.6
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 1.2e-52 210.7 238 53.8
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 1.6e-52 210.3 244 52.9
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 1.6e-52 210.3 238 56.3
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 2.7e-52 209.5 230 55.2
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 3.6e-52 209.1 241 53.9
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 6.1e-52 208.4 234 54.3
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 6.1e-52 208.4 224 58.5
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 6.1e-52 208.4 237 54.9
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 1.0e-51 207.6 235 54.9
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.3e-51 207.2 227 59.0
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 1.8e-51 206.8 240 53.8
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 1.8e-51 206.8 234 54.3
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 3.0e-51 206.1 236 55.9
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 3.9e-51 205.7 234 56.4
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 3.9e-51 205.7 246 53.3
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 5.1e-51 205.3 234 56.4
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 6.7e-51 204.9 236 54.2
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 6.7e-51 204.9 244 54.1
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 6.7e-51 204.9 242 56.6
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 8.7e-51 204.5 234 55.6
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 1.9e-50 203.4 242 55.0
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 2.5e-50 203.0 212 59.0
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 3.3e-50 202.6 234 53.4
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 3.3e-50 202.6 237 53.6
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 3.3e-50 202.6 242 51.7
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 4.3e-50 202.2 226 56.2
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 9.7e-50 201.1 222 54.1
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 1.3e-49 200.7 219 54.8
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 1.6e-49 200.3 226 53.5
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.6e-49 200.3 246 53.7
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 8.2e-49 198.0 245 53.1
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 1.1e-48 197.6 222 57.2
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 2.4e-48 196.4 230 53.9
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 3.1e-48 196.1 235 54.5
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 4.1e-48 195.7 238 53.8
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 5.3e-48 195.3 224 55.8
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 6.9e-48 194.9 247 51.0
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 6.9e-48 194.9 226 55.3
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 9.1e-48 194.5 245 51.0
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 1.2e-47 194.1 237 51.9
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 1.2e-47 194.1 241 52.3
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 2.6e-47 193.0 209 56.9
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 2.6e-47 193.0 224 53.1
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 5.9e-47 191.8 239 52.3
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 7.7e-47 191.4 225 55.6
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 1.3e-46 190.7 236 50.0
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 1.3e-46 190.7 250 49.6
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 1.7e-46 190.3 242 48.3
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 1.7e-46 190.3 226 56.2
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 8.5e-46 188.0 211 54.0
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 1.1e-45 187.6 244 48.4
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 1.4e-45 187.2 203 59.6
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 1.4e-45 187.2 244 49.6
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 2.5e-45 186.4 226 54.0
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 2.5e-45 186.4 243 49.4
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 5.5e-45 185.3 220 54.1
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 4.6e-44 182.2 222 53.6
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 7.9e-44 181.4 236 51.7
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 1.0e-43 181.0 194 58.2
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 1.8e-43 180.3 257 47.5
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 1.8e-43 180.3 257 47.5
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 1.8e-43 180.3 225 53.8
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 1.8e-43 180.3 244 50.8
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 2.3e-43 179.9 257 47.1
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 5.1e-43 178.7 227 50.7
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 6.7e-43 178.3 189 59.3
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 6.7e-43 178.3 213 53.1
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 2.0e-42 176.8 235 48.5
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 3.3e-42 176.0 225 52.4
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 3.3e-42 176.0 235 50.2
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 4.4e-42 175.6 235 50.6
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 5.7e-42 175.3 243 47.7
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 4.8e-41 172.2 239 47.3
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 8.2e-41 171.4 223 48.0
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 8.2e-41 171.4 239 46.9
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 1.8e-40 170.2 217 51.2
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 3.1e-40 169.5 241 47.3
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 2.0e-39 166.8 217 50.2
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 1.3e-38 164.1 242 45.0
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 4.7e-36 155.6 235 47.2
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 3.7e-33 146.0 118 67.8
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 2.4e-32 143.3 119 65.5
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 4.1e-32 142.5 232 42.2
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 5.3e-32 142.1 231 42.9
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 7.7e-31 138.3 228 43.0
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 6.7e-27 125.2 154 49.4
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 3.7e-25 119.4 239 38.5
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 5.3e-24 115.5 161 49.1
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 2.7e-23 113.2 119 60.5
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 4.5e-23 112.5 130 51.5
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 7.7e-23 111.7 128 47.7
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 1.9e-21 107.1 227 39.6
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 1.0e-19 101.3 127 52.0
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 5.4e-16 89.0 182 38.5
AL1G65220 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 2.3e-11 73.6 60 75.0
PRCOL_00003370 Prasinoderma coloniale HOM05D005991 ORTHO05D007408 7.0e-08 62.0 152 36.8


User provided reference genes

Program Settings