Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 9.2e-102 373.6 197 100.0
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 9.2e-102 373.6 197 100.0
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 4.5e-101 371.3 197 99.0
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 2.3e-100 369.0 197 98.5
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 3.1e-97 358.6 197 96.4
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 3.1e-97 358.6 197 96.4
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 7.5e-96 354.0 197 97.0
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 1.7e-95 352.8 197 94.9
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 2.9e-95 352.1 197 94.4
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 4.9e-95 351.3 197 93.9
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 6.4e-95 350.9 197 94.9
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 6.4e-95 350.9 197 94.9
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 6.4e-95 350.9 197 94.9
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 6.4e-95 350.9 197 94.9
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 1.9e-94 349.4 197 93.4
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 7.8e-93 344.0 257 75.9
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 1.9e-91 339.3 195 93.3
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 7.5e-88 327.4 206 85.9
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.9e-83 312.8 192 87.0
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.9e-79 298.9 189 79.9
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 2.9e-79 298.9 189 79.9
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 8.3e-79 297.4 192 79.2
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 1.9e-78 296.2 191 81.2
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 1.9e-78 296.2 192 79.2
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 1.9e-78 296.2 190 77.9
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 3.2e-78 295.4 190 78.9
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 4.1e-78 295.0 189 79.4
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 5.4e-78 294.7 189 81.5
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 9.2e-78 293.9 197 77.7
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 2.1e-77 292.7 182 80.8
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.7e-77 292.4 189 78.8
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.7e-77 292.4 189 78.8
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 3.5e-77 292.0 186 81.7
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 3.5e-77 292.0 185 82.2
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 1.3e-76 290.0 186 80.1
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 1.3e-76 290.0 185 77.8
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.7e-76 289.7 187 79.7
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 1.7e-76 289.7 188 78.2
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 2.3e-76 289.3 173 82.7
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 2.3e-76 289.3 184 80.4
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 3.0e-76 288.9 182 80.2
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 5.1e-76 288.1 189 77.2
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 5.1e-76 288.1 185 78.9
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 6.6e-76 287.7 186 79.6
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.1e-75 287.0 189 78.3
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 1.1e-75 287.0 188 77.7
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 1.1e-75 287.0 186 79.0
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.1e-75 287.0 190 81.1
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 1.1e-75 287.0 192 78.6
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 1.9e-75 286.2 176 80.1
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 1.9e-75 286.2 190 78.4
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.9e-75 286.2 190 77.9
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 2.5e-75 285.8 189 77.2
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 3.3e-75 285.4 186 76.9
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 7.3e-75 284.3 190 78.4
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 9.6e-75 283.9 172 83.1
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 9.6e-75 283.9 187 77.5
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 9.6e-75 283.9 187 77.5
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 9.6e-75 283.9 192 77.6
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 9.6e-75 283.9 191 78.5
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 1.6e-74 283.1 183 79.2
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 1.6e-74 283.1 184 79.9
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 2.1e-74 282.7 189 77.8
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 2.8e-74 282.3 174 82.2
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 2.8e-74 282.3 175 80.6
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 2.8e-74 282.3 187 77.5
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 3.6e-74 282.0 190 77.4
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 3.6e-74 282.0 189 77.2
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 4.7e-74 281.6 171 80.1
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 6.2e-74 281.2 178 79.8
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 8.1e-74 280.8 195 75.4
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 1.1e-73 280.4 188 76.6
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.1e-73 280.4 174 80.5
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 1.1e-73 280.4 187 76.5
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.4e-73 280.0 174 81.0
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.8e-73 279.6 181 78.5
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 2.4e-73 279.3 172 81.4
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 2.4e-73 279.3 230 67.8
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 2.4e-73 279.3 200 74.0
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 3.1e-73 278.9 187 75.9
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 4.0e-73 278.5 189 75.1
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 4.0e-73 278.5 174 79.9
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 4.0e-73 278.5 185 76.2
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 5.2e-73 278.1 171 81.3
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 5.2e-73 278.1 185 77.8
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 8.9e-73 277.3 182 76.4
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 1.2e-72 276.9 183 78.7
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.2e-72 276.9 176 79.5
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.5e-72 276.6 175 79.4
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.5e-72 276.6 187 76.5
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 1.5e-72 276.6 194 74.2
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 2.6e-72 275.8 189 75.7
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 7.6e-72 274.2 187 75.9
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 9.9e-72 273.9 176 79.5
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 9.9e-72 273.9 191 74.9
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.7e-71 273.1 218 66.1
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 3.8e-71 271.9 184 76.1
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 4.9e-71 271.6 184 76.1
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.1e-70 270.4 227 63.9
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 1.1e-70 270.4 200 71.0
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.9e-70 269.6 172 77.9
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 2.4e-70 269.2 173 78.6
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 2.4e-70 269.2 169 78.7
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.2e-70 268.9 185 74.6
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 4.2e-70 268.5 191 74.9
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.7e-69 265.8 186 73.7
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 6.0e-69 264.6 184 75.5
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 2.1e-66 256.1 168 79.8
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 4.8e-66 255.0 187 72.2
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 1.8e-65 253.1 231 61.5
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.2e-64 250.4 154 82.5
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 9.9e-64 247.3 184 71.2
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 2.9e-63 245.7 168 70.8
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 1.2e-61 240.4 159 76.7
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 5.1e-60 235.0 142 84.5
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 1.1e-59 233.8 197 69.0
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.8e-58 229.2 187 67.9
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 6.2e-58 228.0 138 81.9
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 1.1e-57 227.3 139 85.6
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 1.2e-56 223.8 182 63.2
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 2.2e-55 219.5 181 62.4
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 2.9e-55 219.2 131 85.5
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.1e-54 217.2 128 85.9
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 2.4e-54 216.1 173 60.1
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 1.3e-52 210.3 182 59.9
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.8e-49 199.9 123 82.9
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 9.0e-49 197.6 131 77.1
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.4e-46 190.3 119 79.0
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.4e-46 190.3 127 78.0
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 1.9e-46 189.9 141 70.2
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 9.3e-46 187.6 110 85.5
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 1.8e-44 183.3 125 72.0
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 3.3e-43 179.1 195 54.4
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.0e-40 169.9 102 82.4
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.6e-40 169.5 109 79.8
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.7e-39 166.8 113 77.9
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 1.6e-37 160.2 91 85.7
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.3e-34 150.6 99 77.8
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 3.1e-33 146.0 103 74.8
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 4.1e-33 145.6 102 75.5
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 1.2e-32 144.1 166 44.0
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.8e-31 139.0 82 85.4
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 3.9e-28 129.0 96 71.9
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.1e-27 127.5 104 68.3
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 1.5e-27 127.1 93 72.0
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 2.0e-27 126.7 162 40.1
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 4.3e-27 125.6 171 38.6
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 2.2e-26 123.2 90 64.4
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 2.2e-26 123.2 181 37.6
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 2.8e-26 122.9 101 66.3
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.1e-25 117.9 93 66.7
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 2.6e-24 116.3 75 77.3
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.6e-19 99.8 62 79.0
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.2e-14 82.4 53 73.6
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 8.0e-13 78.2 49 75.5
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.3e-10 70.9 114 42.1
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.7e-10 70.5 114 42.1
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.7e-10 70.5 114 42.1
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.8e-10 69.7 114 42.1
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 8.2e-10 68.2 114 41.2
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 1.7e-07 60.5 115 38.3
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.2e-07 60.1 36 80.6
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 3.8e-07 59.3 68 51.5


User provided reference genes

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