Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 6.1e-222 773.9 397 100.0
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 6.3e-219 763.8 397 98.5
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 6.3e-219 763.8 397 98.5
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 9.2e-218 760.0 397 98.2
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 3.5e-217 758.1 397 98.0
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 5.2e-213 744.2 397 96.0
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 5.8e-204 714.1 398 93.0
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 2.1e-198 695.7 398 89.9
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 1.4e-197 693.0 399 90.2
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 5.2e-197 691.0 398 88.9
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 4.4e-196 688.0 398 89.4
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 1.8e-189 666.0 397 88.9
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 1.3e-184 649.8 392 86.5
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 2.5e-183 645.6 400 83.2
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 3.1e-157 558.9 410 74.1
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 3.8e-155 552.0 407 74.2
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 8.4e-155 550.8 398 74.6
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 1.4e-154 550.1 400 72.8
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 2.5e-154 549.3 388 74.7
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 1.2e-153 547.0 395 72.7
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 4.6e-153 545.0 404 72.3
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 2.3e-152 542.7 362 77.9
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 3.0e-152 542.3 395 72.7
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 4.3e-151 538.5 420 70.5
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 4.3e-151 538.5 406 72.4
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 5.7e-151 538.1 362 77.3
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 1.3e-150 537.0 364 76.4
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 1.6e-150 536.6 370 74.3
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 4.8e-150 535.0 368 76.1
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 6.3e-150 534.6 408 71.3
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 8.2e-150 534.3 384 73.4
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 2.4e-149 532.7 407 71.7
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 3.1e-149 532.3 346 78.0
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 4.1e-149 531.9 417 68.6
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 6.9e-149 531.2 407 71.5
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 2.0e-148 529.6 362 74.6
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 2.6e-148 529.3 402 71.1
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 4.5e-148 528.5 348 77.9
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 5.9e-148 528.1 407 71.0
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 5.9e-148 528.1 402 71.1
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 5.9e-148 528.1 402 71.1
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 7.7e-148 527.7 406 69.5
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 1.7e-147 526.6 391 71.9
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 8.5e-147 524.2 345 78.8
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 1.9e-146 523.1 402 69.9
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 1.9e-146 523.1 356 74.7
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 2.5e-146 522.7 346 77.5
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 5.5e-146 521.5 377 72.4
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 7.2e-146 521.2 403 69.5
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 9.4e-146 520.8 344 79.4
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 1.0e-144 517.3 375 74.9
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 1.8e-144 516.5 392 70.7
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 5.1e-144 515.0 362 73.2
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 8.8e-144 514.2 351 75.2
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 2.0e-143 513.1 364 74.2
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 3.3e-143 512.3 393 71.8
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 4.3e-143 511.9 390 71.3
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 1.7e-142 510.0 432 64.4
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 2.8e-142 509.2 398 69.1
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 4.8e-142 508.4 387 70.0
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 3.1e-141 505.8 365 72.1
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 6.9e-141 504.6 382 70.2
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 6.9e-141 504.6 364 72.0
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 4.5e-140 501.9 400 68.8
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 5.9e-140 501.5 376 71.0
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 7.7e-140 501.1 379 70.2
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 2.2e-139 499.6 385 68.8
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 4.2e-138 495.4 353 73.7
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 9.4e-138 494.2 424 64.4
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 1.2e-137 493.8 384 69.3
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 2.1e-137 493.0 351 74.4
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 4.7e-137 491.9 380 70.0
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 1.0e-136 490.7 352 74.1
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 7.4e-135 484.6 311 80.7
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 1.3e-134 483.8 398 67.6
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 6.3e-134 481.5 343 73.5
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 1.4e-133 480.3 381 68.0
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 2.4e-133 479.6 365 71.0
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 2.4e-133 479.6 382 68.8
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 7.0e-133 478.0 353 73.1
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 2.9e-131 472.6 363 68.0
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 2.9e-131 472.6 318 76.1
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 3.8e-131 472.2 351 68.1
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 1.8e-128 463.4 319 74.0
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 3.0e-128 462.6 296 79.4
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 2.0e-127 459.9 368 69.6
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 7.4e-127 458.0 368 66.8
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 1.8e-125 453.4 351 68.7
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 9.1e-125 451.1 318 70.8
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 7.2e-122 441.4 326 70.2
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 4.7e-121 438.7 302 76.2
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 8.0e-121 438.0 427 59.7
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 2.0e-111 406.8 382 59.9
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 1.3e-110 404.1 285 71.9
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 5.5e-106 388.7 478 52.3
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 3.7e-102 375.9 319 61.8
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 4.5e-100 369.0 239 78.7
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 2.1e-97 360.1 386 62.4
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 2.7e-92 343.2 373 61.1
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 2.1e-81 307.0 393 48.6
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 1.1e-80 304.7 351 52.7
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 7.6e-79 298.5 326 47.5
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 1.7e-78 297.4 201 74.6
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 6.4e-78 295.4 317 49.8
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 2.1e-76 290.4 238 66.8
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 5.1e-75 285.8 327 47.1
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 2.0e-71 273.9 243 56.8
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 4.2e-69 266.2 907 28.7
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 1.5e-63 247.7 158 78.5
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 4.5e-55 219.5 143 79.0
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 1.2e-52 211.5 128 85.9
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 6.9e-48 195.7 157 68.8
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 1.0e-46 191.8 177 63.8
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 2.1e-41 174.1 117 79.5
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 6.3e-33 146.0 325 32.3
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 4.1e-24 116.7 82 70.7
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 1.7e-14 84.7 46 87.0
arahy.Tifrunner.gnm1.ann1.91BFZF Arachis hypogaea HOM05D006407 ORTHO05D008079 1.5e-13 81.6 81 55.6
Oeu032606.1 Olea europaea HOM05D006407 ORTHO05D008079 3.2e-13 80.5 48 81.2
Cre09.g393800 Chlamydomonas reinhardtii HOM05D006407 ORTHO05D008079 9.4e-13 79.0 278 28.8
MCO11G451 Micromonas commoda HOM05D006407 ORTHO05D008079 9.4e-13 79.0 260 26.9
MD05G1159200 Malus domestica HOM05D006407 ORTHO05D008079 6.1e-12 76.3 49 75.5
arahy.Tifrunner.gnm1.ann1.6HQ4SR Arachis hypogaea HOM05D006407 ORTHO05D008079 2.4e-08 64.3 74 51.4
MD05G1159400 Malus domestica HOM05D006407 ORTHO05D008079 6.5e-06 56.2 64 46.9


User provided reference genes

Program Settings