Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p04690 Brassica napus HOM05D010575 ORTHO05D001927 2.7e-250 868.2 441 100.0
BcaC04g23783 Brassica carinata HOM05D010575 ORTHO05D001927 2.8e-244 848.2 445 98.0
BolC9t53397H Brassica oleracea HOM05D010575 ORTHO05D001927 6.6e-225 783.9 444 91.2
BraA09t36075Z Brassica rapa HOM05D010575 ORTHO05D001927 1.8e-206 722.6 444 87.4
A09p04380 Brassica napus HOM05D010575 ORTHO05D001927 5.2e-206 721.1 444 87.2
BcaB04g19570 Brassica carinata HOM05D010575 ORTHO05D001927 3.3e-152 542.3 465 67.5
Carub.0006s0269 Capsella rubella HOM05D010575 ORTHO05D001927 2.5e-115 419.9 471 56.3
AL6G13330 Arabidopsis lyrata HOM05D010575 ORTHO05D001927 2.0e-112 410.2 467 56.5
Sp2g18670 Schrenkiella parvula HOM05D010575 ORTHO05D001927 5.4e-110 402.1 460 56.1
CARHR209510 Cardamine hirsuta HOM05D010575 ORTHO05D001927 3.3e-91 339.7 443 51.5
Thhalv10004420m.g Eutrema salsugineum HOM05D010575 ORTHO05D001927 2.7e-85 320.1 414 47.8
A06p39250 Brassica napus HOM05D001083 ORTHO05D001637 2.6e-72 276.9 420 44.3
C07p39090 Brassica napus HOM05D001083 ORTHO05D001637 7.6e-72 275.4 425 44.5
BolC7t44427H Brassica oleracea HOM05D001083 ORTHO05D001637 4.9e-71 272.7 420 42.6
Sp5g00980 Schrenkiella parvula HOM05D010575 ORTHO05D001927 6.4e-71 272.3 440 44.8
BraA06t26839Z Brassica rapa HOM05D001083 ORTHO05D001637 1.1e-70 271.6 423 42.6
AT5G03780 Arabidopsis thaliana HOM05D010575 ORTHO05D001927 3.7e-66 256.5 375 47.7
THA.LOC104822447 Tarenaya hassleriana HOM05D010575 ORTHO05D001927 5.3e-65 252.7 542 34.7
BcaC06g30810 Brassica carinata HOM05D001083 ORTHO05D001637 9.6e-59 231.9 417 39.3
CARHR209520 Cardamine hirsuta HOM05D010575 ORTHO05D001927 8.2e-58 228.8 439 40.5
BcaB01g05861 Brassica carinata HOM05D010575 ORTHO05D001927 6.1e-45 186.0 425 34.8
C03p01300 Brassica napus HOM05D010575 ORTHO05D001927 4.1e-41 173.3 368 36.7
BolC3t12689H Brassica oleracea HOM05D010575 ORTHO05D001927 4.1e-41 173.3 368 36.7
AT1G01150 Arabidopsis thaliana HOM05D002477 ORTHO05D031469 2.9e-23 114.0 391 25.6
QL93p2012_0041 Quercus lobata HOM05D002477 ORTHO05D001927 7.2e-22 109.4 366 26.5
AL1G11350 Arabidopsis lyrata HOM05D010575 ORTHO05D001927 1.6e-21 108.2 377 26.3
QL02p026723 Quercus lobata HOM05D002477 ORTHO05D001927 8.0e-21 105.9 365 28.2
THA.LOC104808828 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 1.8e-20 104.8 417 25.7
Eucgr.K01371 Eucalyptus grandis HOM05D002477 ORTHO05D001927 4.0e-20 103.6 421 29.2
BcaB02g06607 Brassica carinata HOM05D002477 ORTHO05D001927 8.8e-20 102.4 352 27.8
A06p12200 Brassica napus HOM05D002477 ORTHO05D001927 2.0e-19 101.3 350 26.0
BraA06t24388Z Brassica rapa HOM05D002477 ORTHO05D001927 2.0e-19 101.3 350 26.0
QL93p2012_0015 Quercus lobata HOM05D002477 ORTHO05D001927 5.7e-19 99.8 112 42.9
BraA10t45353Z Brassica rapa HOM05D000240 ORTHO05D002608 9.8e-19 99.0 72 62.5
Oeu051541.1 Olea europaea HOM05D002477 ORTHO05D001927 9.8e-19 99.0 63 66.7
Peaxi162Scf00111g00528 Petunia axillaris HOM05D002477 ORTHO05D001927 9.8e-19 99.0 360 28.3
Duzib211G0533 Durio zibethinus HOM05D002477 ORTHO05D001927 1.3e-18 98.6 406 26.4
Duzib133G1113 Durio zibethinus HOM05D002477 ORTHO05D001927 2.8e-18 97.4 418 27.0
BolC5t30170H Brassica oleracea HOM05D002477 ORTHO05D001927 4.8e-18 96.7 350 26.6
TWI38G0076 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 4.8e-18 96.7 395 24.6
Gohir.A07G088300 Gossypium hirsutum HOM05D002477 ORTHO05D001927 6.3e-18 96.3 443 27.3
Thecc.01G201900 Theobroma cacao HOM05D002477 ORTHO05D001927 8.3e-18 95.9 497 25.6
Carub.0001s0106 Capsella rubella HOM05D002477 ORTHO05D001927 1.4e-17 95.1 59 71.2
Nitab4.5_0007468g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 1.4e-17 95.1 395 26.1
CARHR001320 Cardamine hirsuta HOM05D002477 ORTHO05D001927 2.4e-17 94.4 413 25.9
BcaC05g25588 Brassica carinata HOM05D002477 ORTHO05D001927 3.1e-17 94.0 350 26.3
C05p14440 Brassica napus HOM05D002477 ORTHO05D001927 3.1e-17 94.0 350 26.3
Aa31sc156G30 Aethionema arabicum HOM05D002477 ORTHO05D001927 5.4e-17 93.2 452 25.7
Nitab4.5_0001022g0060 Nicotiana tabacum HOM05D002477 ORTHO05D001927 5.4e-17 93.2 398 26.6
Potri.002G005600 Populus trichocarpa HOM05D002477 ORTHO05D001927 2.7e-16 90.9 481 26.4
Gorai.001G100000 Gossypium raimondii HOM05D002477 ORTHO05D001927 3.5e-16 90.5 444 26.8
Atru.chr6.3448 Acer truncatum HOM05D002477 ORTHO05D001927 1.0e-15 89.0 378 25.9
Actinidia35194 Actinidia chinensis HOM05D002477 ORTHO05D001927 1.3e-15 88.6 69 59.4
COL.COLO4_19698 Corchorus olitorius HOM05D002477 ORTHO05D001927 1.3e-15 88.6 119 44.5
ClCG02G003110 Citrullus lanatus HOM05D002477 ORTHO05D001927 1.7e-15 88.2 63 61.9
Lsat_1_v5_gn_9_103221 Lactuca sativa HOM05D002477 ORTHO05D001927 2.2e-15 87.8 66 60.6
CSS0027860 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 2.9e-15 87.4 415 25.8
Gohir.D07G093300 Gossypium hirsutum HOM05D002477 ORTHO05D001927 2.9e-15 87.4 444 26.4
Carub.0002s1033 Capsella rubella HOM05D002477 ORTHO05D001927 3.8e-15 87.0 60 63.3
FvH4_6g51680 Fragaria vesca HOM05D002477 ORTHO05D001927 5.0e-15 86.7 106 37.7
FAN14G3449 Fragaria x ananassa HOM05D002477 ORTHO05D001927 5.0e-15 86.7 106 37.7
ECA246G4940 Erigeron canadensis HOM05D002477 ORTHO05D001927 8.5e-15 85.9 384 26.3
PGR044G1376 Punica granatum HOM05D002477 ORTHO05D001927 8.5e-15 85.9 87 47.1
Sed0002535 Sechium edule HOM05D002477 ORTHO05D001927 8.5e-15 85.9 89 47.2
TAR626G0091 Trochodendron aralioides HOM05D002477 ORTHO05D001927 8.5e-15 85.9 86 47.7
THA.LOC104826636 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 1.1e-14 85.5 90 47.8
RcHm_v2.0_Chr2g0155231 Rosa chinensis HOM05D002477 ORTHO05D001927 1.5e-14 85.1 87 48.3
Sopen07g029480 Solanum pennellii HOM05D002477 ORTHO05D001927 1.5e-14 85.1 389 24.2
CAN.G585.14 Capsicum annuum HOM05D002477 ORTHO05D001927 1.9e-14 84.7 399 25.6
Gohir.A11G146700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 1.9e-14 84.7 429 25.6
Prupe.3G192500 Prunus persica HOM05D002477 ORTHO05D001927 1.9e-14 84.7 385 26.5
CSS0049780 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 2.5e-14 84.3 84 50.0
Sabra02G0004000 Salix brachista HOM05D002477 ORTHO05D001927 2.5e-14 84.3 505 26.3
Sp7g08980 Schrenkiella parvula HOM05D021191 ORTHO05D001927 2.5e-14 84.3 509 24.4
vmacro09463 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 2.5e-14 84.3 130 39.2
CDE02G3597 Ceratophyllum demersum HOM05D002477 ORTHO05D001927 4.2e-14 83.6 165 35.8
FAN14G4953 Fragaria x ananassa HOM05D002477 ORTHO05D001927 4.2e-14 83.6 95 38.9
Solyc07g056120.3 Solanum lycopersicum HOM05D002477 ORTHO05D001927 4.2e-14 83.6 403 24.6
Hund08100 Selenicereus undatus HOM05D002477 ORTHO05D001927 5.5e-14 83.2 98 45.9
Cc05_g09830 Coffea canephora HOM05D002477 ORTHO05D001927 7.2e-14 82.8 61 62.3
Gohir.D11G153400 Gossypium hirsutum HOM05D002477 ORTHO05D001927 7.2e-14 82.8 371 24.3
PSO675G6033 Papaver somniferum HOM05D002477 ORTHO05D001927 7.2e-14 82.8 114 43.0
Sc21g0000360 Simmondsia chinensis HOM05D002477 ORTHO05D001927 7.2e-14 82.8 393 27.2
Ca_16324_v3 Cicer arietinum L. HOM05D002477 ORTHO05D001927 9.4e-14 82.4 60 66.7
Manes.09G026400 Manihot esculenta HOM05D002477 ORTHO05D001927 9.4e-14 82.4 374 25.9
EL10Ac9g22351 Beta vulgaris HOM05D002477 ORTHO05D001927 1.2e-13 82.0 79 48.1
Cpa.g.sc92.17 Carica papaya HOM05D002477 ORTHO05D001927 1.2e-13 82.0 402 22.6
PGR042G2775 Punica granatum HOM05D002477 ORTHO05D001927 1.2e-13 82.0 72 50.0
CiPaw.03G284600 Carya illinoinensis HOM05D002477 ORTHO05D001927 1.6e-13 81.6 244 30.3
Glyma.15G236400 Glycine max HOM05D002477 ORTHO05D001927 1.6e-13 81.6 59 64.4
SGA_v2.0_scaffold70G23601 Striga asiatica HOM05D002477 ORTHO05D001927 1.6e-13 81.6 408 24.3
PGSC0003DMG400031096 Solanum tuberosum HOM05D002477 ORTHO05D001927 2.1e-13 81.3 392 24.2
Lalb_Chr04g0259381 Lupinus albus HOM05D002477 ORTHO05D001927 2.7e-13 80.9 417 26.1
SGA_v2.0_scaffold7G04035 Striga asiatica HOM05D001894 ORTHO05D001752 2.7e-13 80.9 374 24.3
VMungo1127G0424 Vigna mungo HOM05D002477 ORTHO05D001927 2.7e-13 80.9 59 64.4
arahy.Tifrunner.gnm1.ann1.PI38UG Arachis hypogaea HOM05D002477 ORTHO05D001927 3.6e-13 80.5 421 23.8
CANSAT64G2375 Cannabis sativa HOM05D002477 ORTHO05D001927 3.6e-13 80.5 423 23.4
Haze_17377 Corylus avellana HOM05D000475 ORTHO05D000343 3.6e-13 80.5 62 58.1
FAN05G2298 Fragaria x ananassa HOM05D002477 ORTHO05D001927 3.6e-13 80.5 73 50.7
FAN09G2397 Fragaria x ananassa HOM05D002477 ORTHO05D001927 3.6e-13 80.5 73 50.7
Nn1g07679 Nelumbo nucifera HOM05D002477 ORTHO05D001927 4.7e-13 80.1 71 52.1
Thhalv10003829m.g Eutrema salsugineum HOM05D021191 ORTHO05D001927 6.1e-13 79.7 59 61.0
Gorai.007G163600 Gossypium raimondii HOM05D002477 ORTHO05D001927 6.1e-13 79.7 71 53.5
AL9U12160 Arabidopsis lyrata HOM05D021191 ORTHO05D001927 8.0e-13 79.3 72 54.2
Carub.0007s3029 Capsella rubella HOM05D021191 ORTHO05D001927 1.0e-12 79.0 59 61.0
TWI36G1687 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 1.4e-12 78.6 360 23.1
FvH4_6g40210 Fragaria vesca HOM05D002477 ORTHO05D001927 2.3e-12 77.8 82 46.3
TPR.G23127 Trifolium pratense HOM05D002477 ORTHO05D001927 2.3e-12 77.8 59 61.0
AUR62037152 Chenopodium quinoa HOM05D002477 ORTHO05D001927 3.0e-12 77.4 98 43.9
DCAR_010045 Daucus carota HOM05D002477 ORTHO05D001927 3.0e-12 77.4 80 46.2
HanXRQChr11g0329911 Helianthus annuus HOM05D002477 ORTHO05D001927 3.0e-12 77.4 212 31.1
ATR0757G170 Amborella trichopoda HOM05D002477 ORTHO05D001927 8.8e-12 75.9 103 40.8
CARHR218000 Cardamine hirsuta HOM05D021191 ORTHO05D001927 8.8e-12 75.9 72 55.6
Rhsim04G0100400 Rhododendron simsii HOM05D002477 ORTHO05D001927 8.8e-12 75.9 446 23.8
CiPaw.10G129800 Carya illinoinensis HOM05D002477 ORTHO05D001927 1.5e-11 75.1 81 50.6
RcHm_v2.0_Chr3g0481261 Rosa chinensis HOM05D002477 ORTHO05D001927 1.5e-11 75.1 67 49.3
GSVIVG01033321001 Vitis vinifera HOM05D002477 ORTHO05D001927 1.5e-11 75.1 73 49.3
Atru.chr1.1043 Acer truncatum HOM05D002477 ORTHO05D001927 2.6e-11 74.3 67 50.7
GSVIVG01030142001 Vitis vinifera HOM05D002477 ORTHO05D001927 3.4e-11 73.9 297 28.6
Nn3g19128 Nelumbo nucifera HOM05D002477 ORTHO05D001927 4.4e-11 73.6 394 24.6
AT4G12670 Arabidopsis thaliana HOM05D021191 ORTHO05D001927 5.7e-11 73.2 141 34.0
Migut.M00522 Erythranthe guttata HOM05D002477 ORTHO05D001927 5.7e-11 73.2 365 24.1
FAN05G2597 Fragaria x ananassa HOM05D002477 ORTHO05D001927 7.5e-11 72.8 50 56.0
Potri.016G053300 Populus trichocarpa HOM05D002477 ORTHO05D001927 7.5e-11 72.8 384 25.3
Haze_19906 Corylus avellana HOM05D002477 ORTHO05D001927 1.3e-10 72.0 96 36.5
HanXRQChr05g0132191 Helianthus annuus HOM05D002477 ORTHO05D001927 1.3e-10 72.0 83 42.2
HanXRQChr15g0491211 Helianthus annuus HOM05D002477 ORTHO05D001927 1.3e-10 72.0 181 29.8
EL10Ac3g07024 Beta vulgaris HOM05D002477 ORTHO05D001927 1.7e-10 71.6 380 25.8
ECA247G2430 Erigeron canadensis HOM05D002477 ORTHO05D001927 1.7e-10 71.6 104 35.6
QL07p021424 Quercus lobata HOM05D002477 ORTHO05D001927 1.7e-10 71.6 68 51.5
CANSAT80G2456 Cannabis sativa HOM05D002477 ORTHO05D001927 2.2e-10 71.2 379 24.8
AUR62025099 Chenopodium quinoa HOM05D002477 ORTHO05D001927 2.2e-10 71.2 93 41.9
Ciclev10004349m.g Citrus clementina HOM05D002477 ORTHO05D001927 2.8e-10 70.9 67 49.3
Lsat_1_v5_gn_8_80200 Lactuca sativa HOM05D000424 ORTHO05D000355 2.8e-10 70.9 59 50.8
AUR62025998 Chenopodium quinoa HOM05D002477 ORTHO05D001927 4.9e-10 70.1 380 25.5
CSS0018822 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 6.3e-10 69.7 375 22.1
Sabra06G0038500 Salix brachista HOM05D002477 ORTHO05D000502 6.3e-10 69.7 73 47.9
Os11g0160700 Oryza sativa ssp. japonica HOM05D012665 ORTHO05D015176 8.3e-10 69.3 377 23.9
Actinidia38563 Actinidia chinensis HOM05D002477 ORTHO05D001927 1.1e-09 68.9 376 22.3
MELO3C024174.2 Cucumis melo HOM05D002477 ORTHO05D001927 1.1e-09 68.9 312 25.6
Glyma.13G197800 Glycine max HOM05D002477 ORTHO05D001927 1.1e-09 68.9 429 23.8
RcHm_v2.0_Chr3g0447711 Rosa chinensis HOM05D002477 ORTHO05D001927 1.1e-09 68.9 91 40.7
unitig_62.g23101 Utricularia gibba HOM05D002477 ORTHO05D001927 1.4e-09 68.6 366 24.0
CSS0044202 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.8e-09 68.2 375 21.9
CsaV3_7G002300 Cucumis sativus L. HOM05D002477 ORTHO05D001927 1.8e-09 68.2 269 25.7
SEGI_31108 Sequoiadendron giganteum HOM05D002477 ORTHO05D001927 2.4e-09 67.8 127 33.1
Cfa016855 Carpinus fangiana HOM05D002477 ORTHO05D001927 3.1e-09 67.4 65 46.2
Psat5g110680 Pisum sativum HOM05D002477 ORTHO05D001927 4.1e-09 67.0 364 25.5
MSTRG.9604 Avicennia marina HOM05D002477 ORTHO05D001927 5.4e-09 66.6 379 23.0
Lsat_1_v5_gn_9_27420 Lactuca sativa HOM05D002477 ORTHO05D001927 5.4e-09 66.6 76 43.4
PGR142G3066 Punica granatum HOM05D002477 ORTHO05D001927 5.4e-09 66.6 66 47.0
SGA_v2.0_scaffold135G34972 Striga asiatica HOM05D002477 ORTHO05D001927 5.4e-09 66.6 68 47.1
SEGI_17132 Sequoiadendron giganteum HOM05D002477 ORTHO05D001927 1.6e-08 65.1 152 32.2
Migut.D00049 Erythranthe guttata HOM05D002477 ORTHO05D001927 2.0e-08 64.7 65 47.7
Prupe.7G066400 Prunus persica HOM05D002477 ORTHO05D001927 2.0e-08 64.7 104 36.5
Actinidia17246 Actinidia chinensis HOM05D002477 ORTHO05D001927 2.7e-08 64.3 368 21.2
Ah.04g151870 Amaranthus hybridus HOM05D002477 ORTHO05D001927 3.5e-08 63.9 365 22.5
ECA236G0694 Erigeron canadensis HOM05D002477 ORTHO05D001927 4.5e-08 63.5 375 21.9
Potri.006G054401 Populus trichocarpa HOM05D002477 ORTHO05D001927 4.5e-08 63.5 140 31.4
Duzib106G0995 Durio zibethinus HOM05D002477 ORTHO05D001927 7.7e-08 62.8 355 24.5
FAN02G1061 Fragaria x ananassa HOM05D002477 ORTHO05D001927 7.7e-08 62.8 61 50.8
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 1.0e-07 62.4 386 23.8
HPP92_005495 Vanilla planifolia HOM05D002477 ORTHO05D001927 1.0e-07 62.4 66 42.4
SalBow7G2975 Salvia bowleyana HOM05D002477 ORTHO05D001927 1.7e-07 61.6 74 43.2
Medtr3g082160 Medicago truncatula HOM05D002477 ORTHO05D001927 2.3e-07 61.2 417 24.2
DCAR_009054 Daucus carota HOM05D002477 ORTHO05D001927 2.9e-07 60.8 398 23.1
PGR004G2549 Punica granatum HOM05D002477 ORTHO05D001927 2.9e-07 60.8 73 42.5
CANSAT80G0265 Cannabis sativa HOM05D002477 ORTHO05D001927 3.8e-07 60.5 62 51.6
Sabra16G0056600 Salix brachista HOM05D002477 ORTHO05D001927 3.8e-07 60.5 380 22.9
unitig_744.g24381 Utricularia gibba HOM05D002477 ORTHO05D001927 3.8e-07 60.5 66 47.0
FAN14G5266 Fragaria x ananassa HOM05D002477 ORTHO05D001927 6.6e-07 59.7 58 48.3
Nitab4.5_0005559g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 8.6e-07 59.3 69 44.9
Peaxi162Scf00398g00011 Petunia axillaris HOM05D002477 ORTHO05D001927 1.5e-06 58.5 366 22.4
Cc06_g16670 Coffea canephora HOM05D002477 ORTHO05D001927 1.9e-06 58.2 401 22.9
Os11g0482500 Oryza sativa ssp. japonica HOM05D012665 ORTHO05D015176 1.9e-06 58.2 393 22.4
Manes.18G010900 Manihot esculenta HOM05D002477 ORTHO05D001927 2.5e-06 57.8 314 26.4
vmacro09089 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 3.3e-06 57.4 50 50.0
Lsat_1_v5_gn_8_35420 Lactuca sativa HOM05D002477 ORTHO05D001927 4.3e-06 57.0 77 45.5
Gohir.A09G123900 Gossypium hirsutum HOM05D002477 ORTHO05D001927 5.6e-06 56.6 164 29.3
Gohir.D09G120700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 5.6e-06 56.6 164 29.9
Gorai.006G138200 Gossypium raimondii HOM05D002477 ORTHO05D001927 7.3e-06 56.2 53 49.1
Lj6g0015125 Lotus japonicus HOM05D002477 ORTHO05D001927 7.3e-06 56.2 454 21.4
Mapoly0084s0085 Marchantia polymorpha HOM05D002477 ORTHO05D001927 7.3e-06 56.2 63 42.9
Psat6g126680 Pisum sativum HOM05D002477 ORTHO05D001927 7.3e-06 56.2 386 23.3


User provided reference genes

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