Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-87 326.6 175 100.0
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 4.2e-82 308.1 180 92.8
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 9.4e-82 307.0 180 92.8
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 2.6e-76 288.9 183 86.3
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 5.5e-74 281.2 183 83.1
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 9.4e-74 280.4 175 87.4
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 2.4e-69 265.8 187 80.7
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 9.1e-69 263.8 187 79.1
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 4.5e-68 261.5 168 87.5
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 5.9e-68 261.2 187 79.7
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 5.9e-68 261.2 187 78.6
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 5.9e-68 261.2 187 79.7
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 5.9e-68 261.2 187 79.7
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.3e-67 260.0 188 77.7
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.9e-66 256.1 187 77.5
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 8.8e-64 247.3 189 74.1
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 1.7e-62 243.0 193 74.1
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 7.0e-61 237.7 187 73.3
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 5.0e-59 231.5 182 73.1
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 5.5e-58 228.0 186 68.3
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 4.7e-57 224.9 182 72.5
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 2.0e-55 219.5 182 70.9
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 2.0e-55 219.5 182 70.9
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 2.8e-54 215.7 182 69.8
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 6.8e-48 194.5 190 61.1
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 5.0e-43 178.3 193 60.1
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 4.2e-42 175.3 193 52.8
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 7.2e-42 174.5 182 56.0
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.8e-40 169.9 195 53.8
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 1.8e-40 169.9 184 53.3
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 3.0e-40 169.1 185 54.6
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.5e-39 166.8 184 52.7
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 2.6e-39 166.0 196 51.5
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 4.4e-39 165.2 194 53.1
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 5.7e-39 164.9 193 54.4
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 9.8e-39 164.1 184 52.2
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 4.9e-38 161.8 192 51.6
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 1.1e-37 160.6 180 54.4
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.8e-37 159.8 184 55.4
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 1.6e-36 156.8 187 51.9
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 7.8e-36 154.5 185 55.1
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.3e-35 153.7 196 50.5
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 2.3e-35 152.9 191 52.4
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 6.6e-35 151.4 186 51.1
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 6.6e-35 151.4 182 50.5
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.1e-34 150.6 191 49.2
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 1.1e-34 150.6 190 51.6
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 1.1e-34 150.6 184 52.7
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 2.5e-34 149.4 204 48.0
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 7.3e-34 147.9 184 52.7
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 9.5e-34 147.5 196 51.5
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 2.1e-33 146.4 197 50.8
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 4.7e-33 145.2 199 46.2
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 6.2e-33 144.8 205 47.8
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 8.0e-33 144.4 198 49.0
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 8.0e-33 144.4 198 46.0
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 1.4e-32 143.7 204 46.1
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 1.8e-32 143.3 204 46.1
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 3.1e-32 142.5 201 46.3
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 4.0e-32 142.1 195 48.7
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 5.2e-32 141.7 187 48.1
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 6.8e-32 141.4 180 51.1
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 8.9e-32 141.0 192 46.4
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 1.2e-31 140.6 209 45.0
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 1.2e-31 140.6 164 50.6
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 1.5e-31 140.2 205 45.4
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 2.6e-31 139.4 214 42.1
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 3.4e-31 139.0 186 51.1
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 7.5e-31 137.9 186 51.1
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 9.8e-31 137.5 211 46.0
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.7e-30 136.7 189 46.6
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 1.7e-30 136.7 189 48.1
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.2e-30 136.3 177 51.4
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.2e-30 136.3 177 51.4
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 2.2e-30 136.3 210 43.3
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.9e-30 136.0 182 50.5
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 4.9e-30 135.2 200 44.0
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 6.4e-30 134.8 179 51.4
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 6.4e-30 134.8 177 50.8
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 6.4e-30 134.8 192 46.4
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 8.3e-30 134.4 202 44.1
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.4e-29 133.7 190 46.8
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 1.9e-29 133.3 204 44.6
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 2.4e-29 132.9 179 48.6
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 5.4e-29 131.7 207 44.4
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 3.5e-28 129.0 209 43.1
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 4.6e-28 128.6 210 43.3
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 1.0e-27 127.5 178 46.6
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 1.3e-27 127.1 173 46.2
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.7e-27 126.7 203 43.3
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 3.0e-27 125.9 207 43.0
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 3.0e-27 125.9 189 43.4
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 3.9e-27 125.6 207 42.5
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 5.0e-27 125.2 188 45.2
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 6.6e-27 124.8 207 42.5
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 6.6e-27 124.8 223 39.0
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 1.1e-26 124.0 162 46.9
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.5e-26 123.6 210 41.9
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.9e-26 123.2 203 42.4
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 4.3e-26 122.1 188 41.0
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 7.3e-26 121.3 215 43.7
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 7.3e-26 121.3 215 39.5
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.8e-25 119.4 210 40.5
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 2.8e-25 119.4 150 49.3
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 3.6e-25 119.0 210 41.9
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 4.7e-25 118.6 158 48.1
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 6.2e-25 118.2 217 41.5
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 8.1e-25 117.9 205 42.0
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 2.3e-24 116.3 186 43.0
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 2.3e-24 116.3 222 39.2
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 4.0e-24 115.5 199 42.7
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 6.8e-24 114.8 188 43.6
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 8.9e-24 114.4 182 45.6
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 8.9e-24 114.4 182 46.7
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 1.5e-23 113.6 183 43.2
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 2.6e-23 112.8 183 43.2
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 4.4e-23 112.1 186 41.4
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 9.8e-23 110.9 184 42.4
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 2.2e-22 109.8 185 42.2
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 2.2e-22 109.8 185 42.2
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 2.2e-22 109.8 185 42.2
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 2.2e-22 109.8 133 53.4
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 2.9e-22 109.4 213 37.1
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 2.9e-22 109.4 191 40.8
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.9e-22 109.4 201 41.3
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 2.9e-22 109.4 192 41.1
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 2.9e-22 109.4 197 39.1
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 4.9e-22 108.6 211 37.9
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 8.3e-22 107.8 229 35.4
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 1.9e-21 106.7 205 40.5
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 2.4e-21 106.3 185 41.1
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 2.4e-21 106.3 187 43.3
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 3.2e-21 105.9 195 36.9
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 5.4e-21 105.1 243 35.4
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 1.6e-20 103.6 180 42.8
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 1.6e-20 103.6 180 42.8
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 1.6e-20 103.6 208 38.9
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 2.1e-20 103.2 180 42.8
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.7e-20 102.8 175 40.6
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 7.8e-20 101.3 189 40.2
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 3.0e-19 99.4 179 40.2
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 3.0e-19 99.4 179 40.2
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 3.0e-19 99.4 195 40.5
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 3.9e-19 99.0 209 38.8
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 6.6e-19 98.2 191 40.3
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 1.1e-18 97.4 204 38.2
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 1.9e-18 96.7 206 36.9
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 7.3e-18 94.7 186 41.4
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.2e-17 94.0 89 55.1
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.2e-17 94.0 201 36.8
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.4e-16 90.5 75 66.7
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 4.0e-16 89.0 241 32.4
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 4.0e-16 89.0 159 40.3
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 8.9e-16 87.8 178 39.9
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 2.6e-15 86.3 155 38.1
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 2.2e-14 83.2 216 31.9
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 2.9e-14 82.8 181 36.5
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 4.9e-14 82.0 199 35.2
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.4e-13 79.7 178 31.5
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.4e-13 79.7 106 45.3
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 4.1e-13 79.0 178 32.6
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 5.4e-13 78.6 69 60.9
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 2.7e-12 76.3 68 58.8
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 2.7e-12 76.3 194 35.1
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 6.0e-12 75.1 190 35.3
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 3.0e-11 72.8 223 31.8
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 2.5e-10 69.7 175 37.7
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.5e-10 69.7 167 36.5
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 3.3e-10 69.3 187 38.0
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 2.8e-09 66.2 197 32.5
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 3.6e-09 65.9 185 34.6
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 8.1e-09 64.7 195 29.7
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 6.8e-08 61.6 165 35.2
Zm00001eb359900 Zea mays HOM05D015480 ORTHO05D019326 5.8e-07 58.5 189 30.7


User provided reference genes

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