Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p04090 Brassica napus HOM05D005423 ORTHO05D006223 4.7e-21 103.6 52 100.0
BcaC07g40588 Brassica carinata HOM05D005423 ORTHO05D006223 2.2e-18 94.7 51 94.1
BcaC09g50401 Brassica carinata HOM05D005423 ORTHO05D006223 4.8e-18 93.6 52 90.4
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 3.5e-16 87.4 51 86.3
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 4.5e-16 87.0 51 86.3
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 4.5e-16 87.0 51 86.3
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 2.2e-15 84.7 51 84.3
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 3.8e-15 84.0 51 84.3
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.1e-14 82.4 51 78.4
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 3.2e-14 80.9 50 80.0
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 3.2e-14 80.9 50 80.0
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 3.2e-14 80.9 50 80.0
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 4.2e-14 80.5 50 78.0
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 4.2e-14 80.5 50 78.0
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 5.5e-14 80.1 51 74.5
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 9.4e-14 79.3 51 74.5
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.2e-13 79.0 51 74.5
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 1.6e-13 78.6 51 70.6
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.6e-13 78.6 51 76.5
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 2.3e-12 74.7 51 68.6
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 4.0e-12 73.9 51 68.6
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 1.2e-11 72.4 51 66.7
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 6.3e-10 66.6 50 60.0
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 8.3e-10 66.2 50 60.0
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 8.3e-10 66.2 50 60.0
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.1e-09 65.9 50 60.0
A09p38220 Brassica napus HOM05D005423 ORTHO05D006223 1.8e-09 65.1 52 71.2
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 1.8e-09 65.1 50 58.0
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 1.8e-09 65.1 50 58.0
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 4.1e-09 63.9 50 60.0
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 4.1e-09 63.9 51 56.9
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 5.4e-09 63.5 49 61.2
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.6e-08 62.0 49 57.1
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 2.0e-08 61.6 44 63.6
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 1.0e-07 59.3 51 56.9
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 1.7e-07 58.5 51 52.9
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 6.5e-07 56.6 47 53.2
C01p37870 Brassica napus HOM05D000411 ORTHO05D012808 6.5e-07 56.6 37 75.7
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 8.5e-07 56.2 45 62.2
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.5e-06 55.5 51 51.0
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 1.9e-06 55.1 51 47.1
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 2.5e-06 54.7 46 52.2
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 2.5e-06 54.7 46 52.2
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 3.2e-06 54.3 51 51.0
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 4.2e-06 53.9 50 48.0
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 4.2e-06 53.9 51 43.1
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 5.5e-06 53.5 46 54.3
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 5.5e-06 53.5 46 50.0


User provided reference genes

Program Settings