Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 1.3e-31 139.0 69 100.0
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 1.5e-14 82.4 48 85.4
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 4.9e-10 67.4 36 86.1
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 8.4e-10 66.6 36 83.3
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 8.4e-10 66.6 36 83.3
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 1.1e-09 66.2 36 83.3
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 1.1e-09 66.2 35 88.6
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 1.1e-09 66.2 35 88.6
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 1.1e-09 66.2 35 88.6
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 1.1e-09 66.2 35 88.6
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 2.4e-09 65.1 35 85.7
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 3.2e-09 64.7 34 88.2
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 3.2e-09 64.7 34 88.2
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 3.2e-09 64.7 39 76.9
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 3.2e-09 64.7 39 76.9
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 7.1e-09 63.5 35 82.9
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 1.2e-08 62.8 61 54.1
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 1.6e-08 62.4 34 82.4
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 1.6e-08 62.4 35 82.9
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 2.1e-08 62.0 36 77.8
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 2.1e-08 62.0 36 77.8
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 2.1e-08 62.0 36 75.0
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 2.7e-08 61.6 36 77.8
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 2.7e-08 61.6 35 80.0
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 2.7e-08 61.6 36 75.0
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 3.5e-08 61.2 35 80.0
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 3.5e-08 61.2 35 80.0
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 3.5e-08 61.2 35 80.0
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 3.5e-08 61.2 35 80.0
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 4.6e-08 60.8 35 77.1
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 4.6e-08 60.8 61 50.8
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 4.6e-08 60.8 34 76.5
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 4.6e-08 60.8 40 75.0
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 4.6e-08 60.8 40 75.0
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 4.6e-08 60.8 40 75.0
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 4.6e-08 60.8 35 77.1
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 7.9e-08 60.1 35 77.1
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.0e-07 59.7 35 77.1
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 1.0e-07 59.7 35 74.3
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 1.0e-07 59.7 35 77.1
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 1.0e-07 59.7 35 82.9
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 1.0e-07 59.7 35 77.1
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.0e-07 59.7 35 80.0
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 1.3e-07 59.3 35 77.1
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.3e-07 59.3 40 72.5
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 1.3e-07 59.3 39 69.2
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.3e-07 59.3 35 77.1
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.8e-07 58.9 35 74.3
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.8e-07 58.9 35 71.4
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.8e-07 58.9 35 71.4
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 1.8e-07 58.9 35 74.3
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.8e-07 58.9 35 80.0
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.3e-07 58.5 35 71.4
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 2.3e-07 58.5 36 75.0
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 3.0e-07 58.2 35 77.1
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 3.0e-07 58.2 33 78.8
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 3.9e-07 57.8 34 82.4
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 3.9e-07 57.8 35 74.3
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 3.9e-07 57.8 36 69.4
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 3.9e-07 57.8 35 74.3
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 3.9e-07 57.8 35 77.1
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 3.9e-07 57.8 37 73.0
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 3.9e-07 57.8 40 65.0
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 3.9e-07 57.8 35 71.4
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 3.9e-07 57.8 36 69.4
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 5.1e-07 57.4 35 71.4
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 5.1e-07 57.4 35 71.4
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 5.1e-07 57.4 35 74.3
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 5.1e-07 57.4 35 74.3
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 5.1e-07 57.4 35 71.4
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 5.1e-07 57.4 33 72.7
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 5.1e-07 57.4 34 76.5
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 5.1e-07 57.4 40 70.0
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 5.1e-07 57.4 36 72.2
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 5.1e-07 57.4 36 72.2
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 6.7e-07 57.0 33 78.8
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 8.7e-07 56.6 35 71.4
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 8.7e-07 56.6 35 77.1
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 8.7e-07 56.6 40 70.0
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 8.7e-07 56.6 35 71.4
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 8.7e-07 56.6 35 74.3
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 8.7e-07 56.6 34 76.5
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 8.7e-07 56.6 33 75.8
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 8.7e-07 56.6 39 66.7
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 8.7e-07 56.6 37 70.3
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.1e-06 56.2 34 76.5
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 1.1e-06 56.2 33 72.7
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 1.1e-06 56.2 33 72.7
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 1.1e-06 56.2 35 71.4
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 1.1e-06 56.2 35 74.3
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 1.1e-06 56.2 35 71.4
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 1.5e-06 55.8 35 74.3
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 1.5e-06 55.8 34 76.5
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 1.5e-06 55.8 61 47.5
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 1.9e-06 55.5 35 68.6
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 1.9e-06 55.5 32 75.0
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 1.9e-06 55.5 30 83.3
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 1.9e-06 55.5 35 74.3
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.5e-06 55.1 35 74.3
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.5e-06 55.1 35 71.4
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.5e-06 55.1 35 71.4
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 2.5e-06 55.1 35 68.6
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 2.5e-06 55.1 35 74.3
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 2.5e-06 55.1 34 70.6
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 3.3e-06 54.7 34 73.5
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 3.3e-06 54.7 36 69.4
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 3.3e-06 54.7 35 71.4
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 3.3e-06 54.7 34 67.6
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 4.3e-06 54.3 35 65.7
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 5.6e-06 53.9 34 70.6
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 5.6e-06 53.9 33 72.7
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 7.4e-06 53.5 36 66.7
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 7.4e-06 53.5 35 71.4
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 7.4e-06 53.5 37 67.6
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 7.4e-06 53.5 35 74.3
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 7.4e-06 53.5 35 71.4
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 7.4e-06 53.5 33 72.7
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 9.6e-06 53.1 35 71.4
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 9.6e-06 53.1 47 57.4
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 9.6e-06 53.1 34 70.6


User provided reference genes

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