Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 7.0e-96 354.0 183 100.0
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 2.7e-95 352.1 183 99.5
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 5.0e-94 347.8 183 99.5
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 5.0e-94 347.8 183 98.4
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 5.0e-94 347.8 183 98.4
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 2.2e-89 332.4 183 94.0
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 2.5e-85 318.9 181 92.3
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 2.5e-85 318.9 183 91.8
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 2.1e-84 315.8 183 89.6
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 8.0e-84 313.9 182 90.7
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 1.1e-80 303.5 182 87.4
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 2.0e-79 299.3 183 84.7
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 2.5e-77 292.4 183 83.1
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 2.6e-74 282.3 178 78.7
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 8.6e-62 240.7 176 68.8
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 1.9e-61 239.6 178 68.5
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 3.3e-61 238.8 180 69.4
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 5.6e-61 238.0 179 68.2
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 7.3e-61 237.7 179 66.5
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 9.5e-61 237.3 175 68.6
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 9.5e-61 237.3 179 66.5
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 2.8e-60 235.7 181 67.4
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 2.8e-60 235.7 182 65.9
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 4.7e-60 235.0 175 66.9
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 8.1e-60 234.2 178 66.9
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.4e-59 233.4 176 67.6
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 1.8e-59 233.0 182 64.8
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 3.1e-59 232.3 179 67.0
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 4.0e-59 231.9 179 66.5
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 4.0e-59 231.9 179 68.2
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 6.8e-59 231.1 181 65.7
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 1.2e-58 230.3 179 66.5
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 1.2e-58 230.3 178 65.7
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 1.2e-58 230.3 170 70.0
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 1.5e-58 229.9 178 65.2
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 2.6e-58 229.2 177 66.1
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 2.6e-58 229.2 175 67.4
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 4.4e-58 228.4 181 66.3
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 4.4e-58 228.4 181 63.5
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 4.4e-58 228.4 179 65.9
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 5.8e-58 228.0 177 65.0
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 7.5e-58 227.6 176 67.0
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 9.9e-58 227.3 178 64.0
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 1.7e-57 226.5 180 65.0
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 1.7e-57 226.5 178 63.5
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 1.7e-57 226.5 178 65.2
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 4.9e-57 224.9 172 66.3
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 4.9e-57 224.9 182 63.7
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 6.4e-57 224.6 174 66.1
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 8.3e-57 224.2 175 66.3
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 1.1e-56 223.8 182 64.8
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.9e-56 223.0 189 59.8
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 1.9e-56 223.0 171 66.1
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 3.2e-56 222.2 187 62.6
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 5.4e-56 221.5 175 65.1
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 7.1e-56 221.1 193 61.7
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 7.1e-56 221.1 174 65.5
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 9.2e-56 220.7 174 64.9
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 4.6e-55 218.4 179 63.1
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 4.6e-55 218.4 177 63.8
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 6.0e-55 218.0 174 64.4
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 7.8e-55 217.6 168 65.5
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 6.6e-54 214.5 175 62.9
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 5.6e-53 211.5 172 62.8
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 7.3e-53 211.1 171 62.6
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 1.1e-51 207.2 175 60.6
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 1.8e-51 206.5 254 48.8
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 1.8e-51 206.5 176 60.2
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 2.4e-51 206.1 173 59.0
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 1.2e-50 203.8 171 62.0
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 2.0e-50 203.0 167 64.7
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 3.4e-50 202.2 161 64.0
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 1.3e-49 200.3 181 58.6
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 1.3e-49 200.3 176 59.1
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 1.7e-49 199.9 144 69.4
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 2.9e-49 199.1 172 61.6
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 2.9e-49 199.1 171 62.6
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 6.4e-49 198.0 142 70.4
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 3.2e-48 195.7 169 63.3
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 7.1e-48 194.5 161 59.6
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 2.7e-47 192.6 171 57.3
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 6.0e-47 191.4 147 66.0
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 2.3e-46 189.5 144 64.6
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 3.3e-45 185.7 162 56.8
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 4.3e-45 185.3 150 65.3
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 9.6e-45 184.1 207 50.2
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 6.2e-44 181.4 165 53.9
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 3.1e-43 179.1 141 64.5
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 5.2e-43 178.3 141 64.5
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 3.4e-42 175.6 179 54.2
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 9.9e-42 174.1 139 65.5
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 2.9e-41 172.6 139 66.2
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 6.4e-41 171.4 176 54.5
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 9.3e-40 167.5 119 68.9
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 2.7e-39 166.0 162 51.2
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 6.0e-39 164.9 172 46.5
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 1.7e-38 163.3 200 47.5
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 8.7e-38 161.0 162 48.1
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 1.8e-35 153.3 118 63.6
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 3.1e-35 152.5 141 60.3
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 3.8e-33 145.6 142 52.8
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 2.4e-32 142.9 124 61.3
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 6.9e-27 124.8 161 41.6
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 5.8e-26 121.7 118 54.2
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 2.2e-17 93.2 88 54.5
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 3.2e-16 89.4 59 74.6
FAN02G0503 Fragaria x ananassa HOM05D001420 ORTHO05D009292 4.6e-15 85.5 70 60.0
Hund12739 Selenicereus undatus HOM05D001420 ORTHO05D009292 2.4e-11 73.2 52 71.2
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 5.0e-09 65.5 149 28.9
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.2e-07 60.8 40 75.0


User provided reference genes

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