Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p03160 Brassica napus HOM05D004751 ORTHO05D005819 1.5e-52 209.1 99 100.0
A06p04880 Brassica napus HOM05D004751 ORTHO05D005819 4.8e-43 177.6 117 76.9
BraA06t23692Z Brassica rapa HOM05D004751 ORTHO05D005819 6.3e-43 177.2 115 78.3
BcaC09g51723 Brassica carinata HOM05D004751 ORTHO05D005819 1.7e-27 125.9 88 72.7
A01p08650 Brassica napus HOM05D004751 ORTHO05D005819 1.7e-27 125.9 88 72.7
C01p10120 Brassica napus HOM05D004751 ORTHO05D005819 1.7e-27 125.9 88 72.7
BolC1t00970H Brassica oleracea HOM05D004751 ORTHO05D005819 1.7e-27 125.9 88 72.7
BraA01t00815Z Brassica rapa HOM05D004751 ORTHO05D005819 1.7e-27 125.9 88 72.7
Aa31LG2G21070 Aethionema arabicum HOM05D004751 ORTHO05D005819 4.9e-27 124.4 88 71.6
Sp7g27250 Schrenkiella parvula HOM05D004751 ORTHO05D005819 4.9e-27 124.4 88 71.6
Thhalv10024212m.g Eutrema salsugineum HOM05D004751 ORTHO05D005819 1.8e-26 122.5 88 70.5
THA.LOC104814595 Tarenaya hassleriana HOM05D004751 ORTHO05D005819 1.8e-26 122.5 88 70.5
AL7G23020 Arabidopsis lyrata HOM05D004751 ORTHO05D005819 3.2e-26 121.7 88 69.3
AT4G29380 Arabidopsis thaliana HOM05D004751 ORTHO05D005819 3.2e-26 121.7 88 69.3
Carub.0007s1117 Capsella rubella HOM05D004751 ORTHO05D005819 3.2e-26 121.7 88 69.3
Manes.16G108000 Manihot esculenta HOM05D004751 ORTHO05D005819 2.0e-25 119.0 88 69.3
RcHm_v2.0_Chr1g0331571 Rosa chinensis HOM05D004751 ORTHO05D005819 2.0e-25 119.0 88 68.2
FvH4_7g05110 Fragaria vesca HOM05D004751 ORTHO05D005819 4.6e-25 117.9 88 67.0
FAN03G2869 Fragaria x ananassa HOM05D004751 ORTHO05D005819 4.6e-25 117.9 88 67.0
FAN06G4551 Fragaria x ananassa HOM05D004751 ORTHO05D005819 4.6e-25 117.9 88 67.0
Potri.006G153100 Populus trichocarpa HOM05D004751 ORTHO05D005819 4.6e-25 117.9 88 68.2
PGR102G2506 Punica granatum HOM05D004751 ORTHO05D005819 4.6e-25 117.9 88 68.2
Sabra06G0121300 Salix brachista HOM05D004751 ORTHO05D005819 4.6e-25 117.9 88 68.2
Thecc.09G099100 Theobroma cacao HOM05D004751 ORTHO05D005819 4.6e-25 117.9 88 68.2
CANSAT56G3494 Cannabis sativa HOM05D004751 ORTHO05D005819 5.9e-25 117.5 88 67.0
Atru.chr7.1477 Acer truncatum HOM05D004751 ORTHO05D005819 7.8e-25 117.1 88 68.2
FAN01G0060 Fragaria x ananassa HOM05D004751 ORTHO05D005819 1.0e-24 116.7 88 65.9
TWI34G0109 Tripterygium wilfordii HOM05D004751 ORTHO05D005819 1.0e-24 116.7 88 68.2
Duzib150G1241 Durio zibethinus HOM05D004751 ORTHO05D005819 1.3e-24 116.3 88 67.0
Gohir.A05G026300 Gossypium hirsutum HOM05D004751 ORTHO05D005819 1.3e-24 116.3 88 67.0
Gohir.D05G027800 Gossypium hirsutum HOM05D004751 ORTHO05D005819 1.3e-24 116.3 88 67.0
Gorai.009G028000 Gossypium raimondii HOM05D004751 ORTHO05D005819 1.3e-24 116.3 88 67.0
Lalb_Chr14g0371941 Lupinus albus HOM05D004751 ORTHO05D005819 1.3e-24 116.3 88 64.8
MD02G1262100 Malus domestica HOM05D004751 ORTHO05D005819 1.3e-24 116.3 88 65.9
MD07G1058300 Malus domestica HOM05D004751 ORTHO05D005819 1.3e-24 116.3 88 65.9
Prupe.2G065200 Prunus persica HOM05D004751 ORTHO05D005819 1.3e-24 116.3 88 65.9
Glyma.01G006600 Glycine max HOM05D004751 ORTHO05D005819 1.7e-24 115.9 88 64.8
SHI02646 Sapria himalayana HOM05D004751 ORTHO05D005819 1.7e-24 115.9 88 67.0
Ca_25584_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 2.3e-24 115.5 90 64.4
TPR.G31000 Trifolium pratense HOM05D004751 ORTHO05D005819 2.3e-24 115.5 88 67.0
Ciclev10007242m.g Citrus clementina HOM05D004751 ORTHO05D005819 3.0e-24 115.2 88 67.0
Lj2g0020264 Lotus japonicus HOM05D004751 ORTHO05D005819 3.0e-24 115.2 88 63.6
Psat1g048040 Pisum sativum HOM05D004751 ORTHO05D005819 3.0e-24 115.2 88 65.9
TWI32G0016 Tripterygium wilfordii HOM05D004751 ORTHO05D005819 3.0e-24 115.2 88 67.0
CiPaw.03G223200 Carya illinoinensis HOM05D004751 ORTHO05D005819 3.9e-24 114.8 89 66.3
Phvul.004G175100 Phaseolus vulgaris HOM05D004751 ORTHO05D005819 6.6e-24 114.0 88 63.6
Glyma.07G125200 Glycine max HOM05D004751 ORTHO05D005819 8.6e-24 113.6 88 62.5
Lj7C667T4 Lonicera japonica HOM05D004751 ORTHO05D005819 8.6e-24 113.6 90 63.3
Medtr6g088835 Medicago truncatula HOM05D004751 ORTHO05D005819 8.6e-24 113.6 88 64.8
QL02p040907 Quercus lobata HOM05D004751 ORTHO05D005819 8.6e-24 113.6 88 65.9
AUR62021393 Chenopodium quinoa HOM05D004751 ORTHO05D005819 1.1e-23 113.2 90 63.3
Ca_25582_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 1.9e-23 112.5 88 63.6
ClCG03G016070 Citrullus lanatus HOM05D004751 ORTHO05D005819 1.9e-23 112.5 88 65.9
arahy.Tifrunner.gnm1.ann1.11NKIJ Arachis hypogaea HOM05D004751 ORTHO05D005819 2.5e-23 112.1 88 63.6
CDE04G0916 Ceratophyllum demersum HOM05D004751 ORTHO05D005819 2.5e-23 112.1 88 63.6
Haze_25834 Corylus avellana HOM05D004751 ORTHO05D005819 2.5e-23 112.1 88 65.9
Peaxi162Scf01157g00011 Petunia axillaris HOM05D004751 ORTHO05D005819 2.5e-23 112.1 88 64.8
Sed0000923 Sechium edule HOM05D004751 ORTHO05D005819 2.5e-23 112.1 88 65.9
VMungo0464G0426 Vigna mungo HOM05D004751 ORTHO05D005819 2.5e-23 112.1 88 62.5
TAR383G0360 Trochodendron aralioides HOM05D004751 ORTHO05D005819 3.3e-23 111.7 88 63.6
vmacro10847 Vaccinium macrocarpon HOM05D004751 ORTHO05D005819 4.3e-23 111.3 89 62.9
AUR62010880 Chenopodium quinoa HOM05D004751 ORTHO05D005819 5.6e-23 110.9 88 63.6
GSVIVG01015287001 Vitis vinifera HOM05D004751 ORTHO05D005819 7.3e-23 110.5 88 63.6
Dinv36675 Davidia involucrata HOM05D004751 ORTHO05D005819 9.5e-23 110.2 88 63.6
arahy.Tifrunner.gnm1.ann1.9BR2YY Arachis hypogaea HOM05D004751 ORTHO05D005819 1.2e-22 109.8 88 61.4
arahy.Tifrunner.gnm1.ann1.YRLX64 Arachis hypogaea HOM05D004751 ORTHO05D005819 1.2e-22 109.8 88 61.4
EL10Ac8g18369 Beta vulgaris HOM05D004751 ORTHO05D005819 1.2e-22 109.8 88 64.8
Sc08g0008060 Simmondsia chinensis HOM05D004751 ORTHO05D005819 1.2e-22 109.8 88 64.8
Dinv42256 Davidia involucrata HOM05D004751 ORTHO05D005819 2.1e-22 109.0 88 64.8
Hma1.2p1_0012F.1_g007400 Hydrangea macrophylla HOM05D004751 ORTHO05D005819 2.1e-22 109.0 88 63.6
PSO210G2464 Papaver somniferum HOM05D004751 ORTHO05D005819 2.1e-22 109.0 88 63.6
PSO210G3406 Papaver somniferum HOM05D004751 ORTHO05D005819 2.1e-22 109.0 88 63.6
TAR626G1784 Trochodendron aralioides HOM05D004751 ORTHO05D005819 2.1e-22 109.0 88 63.6
TAR639G0003 Trochodendron aralioides HOM05D004751 ORTHO05D005819 2.1e-22 109.0 88 63.6
Cc06_g10590 Coffea canephora HOM05D004751 ORTHO05D005819 2.8e-22 108.6 88 63.6
DCAR_028653 Daucus carota HOM05D004751 ORTHO05D005819 4.7e-22 107.8 88 63.6
Actinidia17515 Actinidia chinensis HOM05D004751 ORTHO05D005819 6.2e-22 107.5 88 62.5
CSS0000434 Camellia sinensis var. sinensis HOM05D004751 ORTHO05D005819 6.2e-22 107.5 88 62.5
CSS0026223 Camellia sinensis var. sinensis HOM05D004751 ORTHO05D005819 6.2e-22 107.5 88 62.5
ATR0730G043 Amborella trichopoda HOM05D004751 ORTHO05D005819 8.0e-22 107.1 88 61.4
Aqoxy7G03607 Aquilegia oxysepala HOM05D004751 ORTHO05D005819 8.0e-22 107.1 88 61.4
MSTRG.26388 Avicennia marina HOM05D004751 ORTHO05D005819 8.0e-22 107.1 88 62.5
ECA240G2374 Erigeron canadensis HOM05D004751 ORTHO05D005819 8.0e-22 107.1 88 62.5
Migut.K00548 Erythranthe guttata HOM05D004751 ORTHO05D005819 8.0e-22 107.1 88 62.5
SalBow1G2004 Salvia bowleyana HOM05D004751 ORTHO05D005819 8.0e-22 107.1 88 62.5
Lsat_1_v5_gn_7_39580 Lactuca sativa HOM05D004751 ORTHO05D005819 1.1e-21 106.7 88 62.5
Oeu018580.2 Olea europaea HOM05D004751 ORTHO05D005819 1.1e-21 106.7 88 61.4
Hund09091 Selenicereus undatus HOM05D004751 ORTHO05D005819 1.1e-21 106.7 88 62.5
CAN.G787.12 Capsicum annuum HOM05D004751 ORTHO05D005819 1.4e-21 106.3 88 62.5
PGSC0003DMG400023589 Solanum tuberosum HOM05D004751 ORTHO05D005819 1.4e-21 106.3 88 62.5
HanXRQChr03g0061061 Helianthus annuus HOM05D004751 ORTHO05D005819 1.8e-21 105.9 90 61.1
MBI15_g07764_MAGBIO Magnolia biondii HOM05D004751 ORTHO05D005819 1.8e-21 105.9 88 60.2
Solyc04g012170.4 Solanum lycopersicum HOM05D004751 ORTHO05D005819 1.8e-21 105.9 88 61.4
Sopen04g006260 Solanum pennellii HOM05D004751 ORTHO05D005819 1.8e-21 105.9 88 61.4
SGA_v2.0_scaffold19G08722 Striga asiatica HOM05D004751 ORTHO05D005819 1.8e-21 105.9 88 62.5
Cpa.g.sc78.25 Carica papaya HOM05D004751 ORTHO05D005819 2.3e-21 105.5 110 54.5
MELO3C015420.2 Cucumis melo HOM05D004751 ORTHO05D005819 2.3e-21 105.5 88 62.5
CsaV3_1G039890 Cucumis sativus L. HOM05D004751 ORTHO05D005819 2.3e-21 105.5 88 62.5
Oeu021455.1 Olea europaea HOM05D004751 ORTHO05D005819 2.3e-21 105.5 88 62.5
Pp3c15_10000 Physcomitrium patens HOM05D004751 ORTHO05D005819 2.3e-21 105.5 89 58.4
Pp3c9_3860 Physcomitrium patens HOM05D004751 ORTHO05D005819 2.3e-21 105.5 89 58.4
Hund26286 Selenicereus undatus HOM05D004751 ORTHO05D005819 2.3e-21 105.5 88 60.2
Nitab4.5_0001242g0100 Nicotiana tabacum HOM05D004751 ORTHO05D005819 3.1e-21 105.1 88 61.4
Nitab4.5_0004673g0040 Nicotiana tabacum HOM05D004751 ORTHO05D005819 3.1e-21 105.1 88 61.4
unitig_8.g4485 Utricularia gibba HOM05D004751 ORTHO05D005819 5.2e-21 104.4 88 59.1
Ah.09g230480 Amaranthus hybridus HOM05D004751 ORTHO05D005819 6.8e-21 104.0 89 61.8
SEGI_14388 Sequoiadendron giganteum HOM05D004751 ORTHO05D005819 8.9e-21 103.6 89 56.2
AagrBONN_evm.TU.Sc2ySwM_228.4976 Anthoceros agrestis HOM05D004751 ORTHO05D005819 2.6e-20 102.1 88 58.0
Mapoly0002s0158 Marchantia polymorpha HOM05D004751 ORTHO05D005819 3.4e-20 101.7 88 55.7
Zm00001eb257890 Zea mays HOM05D004751 ORTHO05D005819 9.8e-20 100.1 88 59.1
BcaB08g34921 Brassica carinata HOM05D004751 ORTHO05D005819 1.3e-19 99.8 88 61.4
Zm00001eb192340 Zea mays HOM05D004751 ORTHO05D005819 1.3e-19 99.8 88 58.0
CBR_g47981 Chara braunii HOM05D004751 ORTHO05D005819 9.2e-18 93.6 88 52.3
SMO347G0104 Selaginella moellendorffii HOM05D004751 ORTHO05D005819 1.0e-16 90.1 88 55.7
A09p40550 Brassica napus HOM05D004751 ORTHO05D005819 2.3e-16 89.0 71 62.0
BraA09t39552Z Brassica rapa HOM05D004751 ORTHO05D005819 2.3e-16 89.0 71 62.0
A01p08660 Brassica napus HOM05D004751 ORTHO05D000206 1.1e-15 86.7 70 62.9
Cfa003165 Carpinus fangiana HOM05D004751 ORTHO05D005819 1.6e-14 82.8 43 90.7
Eucgr.C03719 Eucalyptus grandis HOM05D004751 ORTHO05D005819 4.7e-14 81.3 73 56.2
PRCOL_00004168 Prasinoderma coloniale HOM05D004751 ORTHO05D005819 2.3e-13 79.0 88 43.2
Cre06.g290500 Chlamydomonas reinhardtii HOM05D004751 ORTHO05D005819 4.0e-13 78.2 89 43.8
Rhsim05G0038900 Rhododendron simsii HOM05D004751 ORTHO05D005819 2.6e-12 75.5 71 54.9
CDE06G0341 Ceratophyllum demersum HOM05D004751 ORTHO05D008828 1.9e-10 69.3 68 50.0
MCO11G423 Micromonas commoda HOM05D004751 ORTHO05D005819 2.4e-10 68.9 88 37.5
C07p57020 Brassica napus HOM05D004751 ORTHO05D005819 1.1e-07 60.1 58 56.9
CARHR237190 Cardamine hirsuta HOM05D004751 ORTHO05D005819 3.6e-06 55.1 54 53.7


User provided reference genes

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