Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 5.7e-186 654.1 320 100.0
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 4.8e-185 651.0 320 99.4
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 2.5e-165 585.5 331 89.4
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 2.3e-163 578.9 329 88.8
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 8.9e-163 577.0 328 88.7
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 2.6e-154 548.9 329 83.0
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 7.8e-151 537.3 329 79.0
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 8.9e-147 523.9 329 77.2
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 1.2e-146 523.5 329 77.2
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 2.2e-145 519.2 331 75.8
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 2.5e-141 505.8 328 75.0
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 1.9e-136 489.6 327 71.9
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 1.4e-131 473.4 327 69.1
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 9.3e-128 460.7 324 68.8
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 3.5e-127 458.8 325 67.1
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 3.5e-127 458.8 328 65.9
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 1.0e-126 457.2 324 67.3
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.3e-126 456.8 326 67.5
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.3e-126 456.8 326 67.5
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 5.1e-126 454.9 329 66.3
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.5e-125 453.4 326 67.2
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.5e-125 453.4 326 67.2
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 1.5e-125 453.4 323 66.9
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 1.9e-125 453.0 328 64.9
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 4.3e-125 451.8 328 65.9
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 5.6e-125 451.4 329 66.3
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 9.6e-125 450.7 329 65.7
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 9.6e-125 450.7 328 64.6
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 2.8e-124 449.1 328 64.3
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 4.8e-124 448.4 326 65.3
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 4.8e-124 448.4 326 66.3
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 6.2e-124 448.0 327 66.1
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 6.2e-124 448.0 329 64.1
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 1.1e-123 447.2 327 63.9
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 1.4e-123 446.8 329 64.1
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 3.1e-123 445.7 329 64.7
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 4.0e-123 445.3 325 65.8
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 5.3e-123 444.9 328 63.7
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 6.9e-123 444.5 328 64.9
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 6.9e-123 444.5 329 64.7
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 6.9e-123 444.5 326 64.7
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 1.2e-122 443.7 327 63.3
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 1.5e-122 443.4 329 65.3
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 2.0e-122 443.0 329 63.2
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 2.0e-122 443.0 330 64.2
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 2.6e-122 442.6 306 69.6
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 2.6e-122 442.6 327 63.3
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 3.4e-122 442.2 325 66.2
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 4.5e-122 441.8 329 64.4
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 5.8e-122 441.4 327 63.9
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 7.6e-122 441.0 326 62.9
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 9.9e-122 440.7 330 64.2
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 2.2e-121 439.5 327 64.8
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 2.2e-121 439.5 327 64.2
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 2.2e-121 439.5 327 64.5
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 2.2e-121 439.5 330 63.9
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 2.9e-121 439.1 326 64.4
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.9e-121 438.3 327 62.7
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 6.4e-121 438.0 326 64.1
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 8.4e-121 437.6 331 63.4
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 1.1e-120 437.2 326 64.4
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 4.2e-120 435.3 328 64.6
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 4.2e-120 435.3 328 64.6
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 5.4e-120 434.9 327 62.7
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 9.3e-120 434.1 327 62.4
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 9.3e-120 434.1 325 63.4
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 1.6e-119 433.3 327 61.5
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 2.1e-119 433.0 333 61.9
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 2.7e-119 432.6 328 65.2
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 2.7e-119 432.6 328 62.2
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 3.5e-119 432.2 328 63.4
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.5e-119 432.2 328 64.6
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 6.0e-119 431.4 328 64.0
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 7.9e-119 431.0 328 63.4
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 1.0e-118 430.6 326 63.8
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 1.8e-118 429.9 327 61.8
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 1.8e-118 429.9 328 63.1
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 1.8e-118 429.9 328 63.1
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 2.3e-118 429.5 328 63.7
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 3.0e-118 429.1 328 63.1
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 3.0e-118 429.1 326 64.1
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 8.7e-118 427.6 328 62.2
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.5e-117 426.8 330 63.6
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.9e-117 426.4 327 62.1
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 3.3e-117 425.6 328 63.7
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 5.6e-117 424.9 329 61.1
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 7.4e-117 424.5 329 60.8
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 1.3e-116 423.7 327 63.0
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 2.1e-116 422.9 327 61.5
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 6.2e-116 421.4 328 62.2
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.1e-115 420.6 327 62.1
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 1.8e-115 419.9 328 61.6
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 4.0e-115 418.7 335 61.2
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 4.0e-115 418.7 328 62.5
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 5.3e-115 418.3 325 62.5
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 6.9e-115 417.9 327 61.5
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 1.5e-114 416.8 328 60.4
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 7.6e-114 414.5 329 62.0
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 2.2e-113 412.9 328 61.9
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 3.2e-112 409.1 327 58.7
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 2.3e-110 402.9 337 57.9
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.5e-109 400.2 327 56.9
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 1.5e-109 400.2 332 58.4
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 3.3e-109 399.1 328 59.8
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 8.1e-108 394.4 325 56.3
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 9.0e-107 391.0 316 59.5
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.2e-106 390.6 327 59.0
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 2.9e-105 386.0 326 58.9
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 3.8e-105 385.6 299 61.9
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 8.4e-105 384.4 377 50.9
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 2.1e-103 379.8 322 57.8
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.0e-102 377.5 326 58.6
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.0e-102 377.5 326 58.0
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 1.9e-101 373.2 289 61.6
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.5e-98 363.6 272 66.9
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 1.3e-97 360.5 328 55.2
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 6.5e-97 358.2 289 61.2
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 3.7e-92 342.4 241 67.2
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.1e-91 340.9 327 52.6
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 5.1e-86 322.0 339 49.6
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 3.7e-84 315.8 337 49.3
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 1.8e-83 313.5 260 60.0
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 2.6e-82 309.7 375 47.2
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 1.2e-79 300.8 338 47.6
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 5.3e-75 285.4 216 65.7
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 2.0e-74 283.5 208 65.4
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 1.7e-73 280.4 309 49.8
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 4.2e-72 275.8 274 52.9
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 9.4e-72 274.6 400 40.5
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 1.5e-69 267.3 328 44.5
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 4.0e-62 242.7 242 50.4
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 7.5e-61 238.4 179 61.5
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 3.2e-56 223.0 369 39.3
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 4.2e-56 222.6 185 54.1
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 6.3e-52 208.8 218 48.6
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 2.1e-47 193.7 147 62.6
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 1.8e-46 190.7 242 42.6
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 2.7e-42 176.8 143 62.2
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 1.3e-41 174.5 150 53.3
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 3.1e-38 163.3 136 55.1
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 3.1e-38 163.3 136 55.1
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 7.5e-37 158.7 134 56.7
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 7.0e-35 152.1 325 32.9
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 5.6e-24 115.9 152 42.8
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 2.8e-23 113.6 109 51.4
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 3.1e-22 110.2 88 62.5
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 3.4e-21 106.7 90 55.6
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 1.4e-19 101.3 405 25.4
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 1.4e-14 84.7 75 52.0
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 7.8e-10 68.9 67 52.2
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.9e-09 66.6 39 74.4
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 1.6e-07 61.2 67 49.3
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 1.1e-06 58.5 90 36.7
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.4e-06 57.4 51 56.9


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