Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 4.5e-49 197.6 99 100.0
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 2.9e-48 194.9 98 98.0
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 6.5e-48 193.7 98 98.0
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 2.0e-44 182.2 119 81.5
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 4.4e-44 181.0 119 80.7
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 7.5e-44 180.3 119 80.7
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 7.5e-44 180.3 119 80.7
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 2.2e-43 178.7 117 80.3
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 1.4e-42 176.0 121 79.3
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 7.0e-42 173.7 119 78.2
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 6.1e-38 160.6 119 69.7
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 8.0e-38 160.2 119 71.4
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 3.4e-36 154.8 118 66.9
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 2.8e-35 151.8 115 68.7
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 4.9e-35 151.0 118 66.9
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 3.1e-34 148.3 115 66.1
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.3e-32 142.9 120 62.5
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 3.8e-32 141.4 115 64.3
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 3.8e-32 141.4 115 63.5
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 5.0e-32 141.0 121 59.5
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 5.0e-32 141.0 119 61.3
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 6.6e-32 140.6 119 59.7
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 8.6e-32 140.2 115 62.6
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 1.1e-31 139.8 112 64.3
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 1.5e-31 139.4 115 63.5
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.5e-31 139.4 113 62.8
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.5e-31 139.4 113 62.8
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.5e-31 139.4 113 62.8
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.9e-31 139.0 119 59.7
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.9e-31 139.0 119 59.7
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 2.5e-31 138.7 115 63.5
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 3.3e-31 138.3 113 61.9
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 4.3e-31 137.9 114 62.3
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 4.3e-31 137.9 114 62.3
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 1.2e-30 136.3 119 57.1
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 1.6e-30 136.0 112 61.6
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 2.1e-30 135.6 119 55.5
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 2.8e-30 135.2 115 60.9
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 3.6e-30 134.8 113 59.3
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 4.7e-30 134.4 119 58.0
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 6.1e-30 134.0 113 59.3
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 8.0e-30 133.7 119 58.0
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 1.0e-29 133.3 113 60.2
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 1.0e-29 133.3 113 60.2
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 1.0e-29 133.3 112 59.8
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 1.4e-29 132.9 113 59.3
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 1.4e-29 132.9 119 55.5
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 1.4e-29 132.9 113 58.4
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 1.4e-29 132.9 114 60.5
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 1.8e-29 132.5 119 57.1
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 1.8e-29 132.5 113 59.3
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 2.3e-29 132.1 112 60.7
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 3.0e-29 131.7 112 59.8
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 4.0e-29 131.3 115 57.4
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 4.0e-29 131.3 115 57.4
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.0e-29 131.3 119 58.0
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 5.2e-29 131.0 113 58.4
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 5.2e-29 131.0 113 58.4
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 5.2e-29 131.0 113 56.6
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 6.8e-29 130.6 119 56.3
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 8.9e-29 130.2 113 57.5
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 1.2e-28 129.8 115 56.5
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 1.2e-28 129.8 119 55.5
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.5e-28 129.4 119 54.6
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 1.5e-28 129.4 119 55.5
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.6e-28 128.6 119 54.6
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 2.6e-28 128.6 112 55.4
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 2.6e-28 128.6 112 55.4
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 2.6e-28 128.6 114 56.1
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.6e-28 128.6 113 56.6
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 2.6e-28 128.6 113 56.6
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 2.6e-28 128.6 117 54.7
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 3.4e-28 128.3 119 55.5
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 3.4e-28 128.3 119 54.6
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 3.4e-28 128.3 119 54.6
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.4e-28 127.9 119 55.5
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.4e-28 127.9 115 56.5
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 5.7e-28 127.5 119 53.8
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 5.7e-28 127.5 117 54.7
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 7.5e-28 127.1 114 57.9
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 7.5e-28 127.1 113 55.8
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 7.5e-28 127.1 112 57.1
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.3e-27 126.3 117 57.3
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.7e-27 125.9 119 52.9
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 2.2e-27 125.6 112 55.4
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 2.2e-27 125.6 109 67.0
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 2.2e-27 125.6 109 67.0
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 2.9e-27 125.2 114 55.3
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 2.9e-27 125.2 151 47.0
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 3.7e-27 124.8 114 57.0
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 4.9e-27 124.4 114 56.1
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 8.3e-27 123.6 113 55.8
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 1.4e-26 122.9 113 54.0
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 1.4e-26 122.9 98 63.3
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.4e-26 122.9 119 53.8
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.4e-26 122.9 115 56.5
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 1.8e-26 122.5 116 52.6
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 3.2e-26 121.7 120 55.0
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 9.2e-26 120.2 110 54.5
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.2e-25 119.8 113 52.2
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 1.2e-25 119.8 132 50.8
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.5e-25 118.2 128 50.8
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 4.6e-25 117.9 113 52.2
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 4.6e-25 117.9 115 51.3
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 4.6e-25 117.9 118 50.0
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 5.9e-25 117.5 96 62.5
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 7.8e-25 117.1 135 48.9
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.0e-24 116.7 119 49.6
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 1.3e-24 116.3 65 83.1
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.3e-24 116.3 131 49.6
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 3.0e-24 115.2 133 48.1
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 8.6e-24 113.6 113 49.6
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 1.5e-23 112.8 112 52.7
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 1.9e-23 112.5 119 51.3
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 2.5e-23 112.1 119 51.3
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 5.6e-23 110.9 112 50.0
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 1.1e-21 106.7 120 50.0
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 3.1e-21 105.1 71 67.6
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 3.1e-21 105.1 71 70.4
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 1.2e-20 103.2 120 49.2
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 1.2e-20 103.2 114 46.5
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 3.4e-20 101.7 114 46.5
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 3.4e-20 101.7 93 54.8
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 3.4e-20 101.7 93 54.8
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 3.7e-19 98.2 93 49.5
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 1.7e-16 89.4 70 60.0
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 2.3e-16 89.0 62 66.1
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 3.6e-14 81.6 78 55.1
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 3.1e-13 78.6 68 57.4
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 5.2e-13 77.8 112 37.5
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 6.8e-13 77.4 80 52.5
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 3.4e-12 75.1 91 45.1
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 4.1e-10 68.2 116 34.5


User provided reference genes

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