Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 9.5e-127 456.8 228 100.0
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 2.4e-122 442.2 226 97.8
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 1.6e-121 439.5 226 96.9
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 1.6e-121 439.5 226 96.9
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 7.8e-121 437.2 228 96.9
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 2.3e-120 435.6 228 96.1
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 1.9e-106 389.4 230 87.0
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 7.3e-103 377.5 223 83.0
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 2.6e-100 369.0 222 84.2
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 1.9e-98 362.8 224 80.8
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 3.9e-96 355.1 227 76.7
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 2.1e-94 349.4 224 78.1
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 4.8e-94 348.2 222 78.8
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 2.1e-86 322.8 238 68.1
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 6.2e-86 321.2 239 66.5
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 1.8e-85 319.7 238 68.5
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.9e-83 312.4 234 64.5
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 6.5e-83 311.2 245 65.7
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 3.2e-82 308.9 231 65.4
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 5.5e-82 308.1 245 63.3
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 7.1e-82 307.8 233 65.7
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 9.3e-82 307.4 250 62.0
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 9.3e-82 307.4 233 65.7
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.7e-81 305.8 233 65.2
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 6.1e-81 304.7 220 66.8
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 6.1e-81 304.7 242 64.0
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 1.0e-80 303.9 233 65.2
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 1.0e-80 303.9 245 60.8
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 1.3e-80 303.5 238 63.9
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.8e-80 303.1 235 63.0
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 1.8e-80 303.1 230 63.9
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 2.3e-80 302.8 247 63.6
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 2.3e-80 302.8 252 63.5
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 3.0e-80 302.4 246 65.4
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 5.1e-80 301.6 244 62.3
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 6.7e-80 301.2 243 62.1
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 6.7e-80 301.2 238 62.6
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.1e-79 300.4 248 59.7
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.1e-79 300.4 235 62.6
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.5e-79 300.1 243 61.7
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 1.5e-79 300.1 256 60.9
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 1.5e-79 300.1 183 76.5
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.9e-79 299.7 243 63.0
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 2.5e-79 299.3 244 62.7
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 3.3e-79 298.9 228 65.8
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 3.3e-79 298.9 228 65.8
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.3e-79 298.5 246 59.8
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 5.7e-79 298.1 248 60.5
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 5.7e-79 298.1 232 63.8
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 7.4e-79 297.7 252 63.1
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 7.4e-79 297.7 245 61.2
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 7.4e-79 297.7 243 62.1
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.3e-78 297.0 247 59.5
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 1.3e-78 297.0 236 60.6
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 1.6e-78 296.6 212 66.5
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 2.2e-78 296.2 229 63.8
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 2.2e-78 296.2 250 61.2
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 2.8e-78 295.8 253 58.1
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 2.8e-78 295.8 210 67.6
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 3.7e-78 295.4 239 61.5
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 4.8e-78 295.0 231 64.9
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 8.2e-78 294.3 232 60.3
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 8.2e-78 294.3 232 60.3
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 8.2e-78 294.3 203 68.0
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 1.4e-77 293.5 183 73.8
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 1.8e-77 293.1 192 74.0
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 2.4e-77 292.7 242 61.6
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 2.4e-77 292.7 239 61.1
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 2.4e-77 292.7 227 62.1
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 2.4e-77 292.7 227 62.1
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 3.1e-77 292.4 206 67.5
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 3.1e-77 292.4 247 58.7
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 6.9e-77 291.2 239 61.9
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 6.9e-77 291.2 242 62.0
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 6.9e-77 291.2 239 61.1
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 6.9e-77 291.2 227 61.7
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 5.9e-76 288.1 183 71.6
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 1.0e-75 287.3 247 58.3
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.7e-75 286.6 246 58.9
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.7e-75 286.6 265 57.7
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 2.9e-75 285.8 243 58.8
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 6.5e-75 284.6 222 63.1
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 1.1e-74 283.9 231 61.9
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 1.1e-74 283.9 233 60.9
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 1.4e-74 283.5 247 59.1
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 1.9e-74 283.1 281 55.5
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 3.2e-74 282.3 266 55.6
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.1e-73 279.6 246 57.7
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 1.8e-72 276.6 240 60.0
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.1e-71 273.9 246 56.5
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 2.5e-71 272.7 240 58.8
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 2.5e-71 272.7 167 76.6
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 7.4e-71 271.2 246 56.1
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.8e-70 269.2 264 54.5
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 8.2e-70 267.7 246 56.1
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 3.1e-69 265.8 170 70.6
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 4.5e-68 261.9 342 46.2
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 7.7e-68 261.2 202 60.4
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 4.7e-65 251.9 210 61.4
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 4.7e-65 251.9 176 64.2
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 3.0e-64 249.2 180 62.8
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 5.7e-63 245.0 207 60.4
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 5.7e-63 245.0 230 55.7
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 3.7e-62 242.3 185 64.3
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 4.8e-62 241.9 183 63.9
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 8.2e-62 241.1 184 64.7
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 1.4e-61 240.4 231 50.6
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 3.8e-59 232.3 170 63.5
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.1e-58 230.7 210 60.5
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 2.5e-58 229.6 243 50.6
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 7.2e-58 228.0 167 63.5
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 2.1e-57 226.5 235 52.3
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 1.0e-56 224.2 176 60.8
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 5.2e-56 221.9 142 70.4
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 2.2e-54 216.5 161 62.1
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 2.6e-52 209.5 247 47.0
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 1.4e-48 197.2 130 77.7
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 1.4e-48 197.2 168 60.1
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 4.0e-48 195.7 140 67.1
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 8.8e-48 194.5 230 43.9
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 1.2e-47 194.1 182 55.5
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 2.6e-47 193.0 115 76.5
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 3.4e-47 192.6 186 55.4
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 2.4e-45 186.4 179 54.2
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 7.7e-44 181.4 182 48.4
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 3.8e-43 179.1 117 80.3
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 6.5e-43 178.3 119 78.2
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 3.7e-38 162.5 116 64.7
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 4.1e-37 159.1 145 57.9
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 5.0e-35 152.1 132 65.2
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 5.0e-35 152.1 132 65.2
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 8.6e-35 151.4 160 51.9
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 1.9e-34 150.2 203 44.8
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 9.5e-34 147.9 144 53.5
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 1.2e-33 147.5 86 75.6
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 2.1e-33 146.7 165 52.7
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 2.8e-33 146.4 179 46.4
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 6.1e-33 145.2 155 51.0
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 3.0e-32 142.9 97 70.1
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 3.7e-30 136.0 129 54.3
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 1.4e-29 134.0 95 63.2
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 1.8e-24 117.1 65 84.6
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 6.4e-22 108.6 183 36.1
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 2.4e-21 106.7 67 71.6
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 4.1e-21 105.9 79 64.6
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 2.0e-15 87.0 62 64.5
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 2.6e-15 86.7 68 58.8
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 3.2e-13 79.7 84 52.4
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.2e-12 77.8 83 59.0
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 1.0e-11 74.7 67 55.2
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.1e-10 71.2 82 53.7
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.6e-09 67.4 40 75.0


User provided reference genes

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