Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 2.5e-153 545.4 282 100.0
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 1.2e-150 536.6 282 98.9
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 7.3e-145 517.3 282 95.7
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 4.5e-110 401.7 210 98.6
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 1.7e-109 399.8 210 98.1
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 5.3e-103 378.3 209 92.8
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 7.7e-102 374.4 210 91.0
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 2.2e-101 372.9 210 91.0
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 1.9e-100 369.8 211 91.9
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 2.5e-100 369.4 210 90.5
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 4.2e-100 368.6 210 90.5
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 1.0e-98 364.0 210 89.5
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 8.8e-98 360.9 210 88.6
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 3.3e-97 359.0 210 88.6
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 3.3e-97 359.0 210 88.1
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 1.7e-96 356.7 210 87.1
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 3.7e-96 355.5 210 87.1
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 3.7e-96 355.5 193 93.8
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 3.1e-95 352.4 211 87.2
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.3e-93 347.1 210 87.1
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 2.4e-79 299.7 213 74.6
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 3.1e-79 299.3 213 76.1
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 9.1e-79 297.7 213 74.2
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.6e-78 297.0 220 75.5
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 1.6e-78 297.0 176 85.2
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 3.5e-78 295.8 185 82.2
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.5e-78 295.4 213 74.2
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 7.7e-78 294.7 218 73.9
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 1.0e-77 294.3 212 75.0
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 1.3e-77 293.9 210 75.2
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 1.7e-77 293.5 178 83.7
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 2.3e-77 293.1 179 83.8
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.3e-77 293.1 211 76.3
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 2.3e-77 293.1 176 85.2
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 2.9e-77 292.7 214 74.8
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 5.0e-77 292.0 217 72.8
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 5.0e-77 292.0 200 76.0
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 6.6e-77 291.6 200 76.0
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 6.6e-77 291.6 215 73.5
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 6.6e-77 291.6 215 73.5
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 6.6e-77 291.6 210 74.8
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 1.5e-76 290.4 210 74.8
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 1.9e-76 290.0 215 73.0
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 2.5e-76 289.7 216 74.5
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 2.5e-76 289.7 214 73.4
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 4.2e-76 288.9 210 74.3
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 4.2e-76 288.9 210 73.8
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 4.2e-76 288.9 216 73.1
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 5.6e-76 288.5 205 75.6
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 5.6e-76 288.5 217 73.3
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 5.6e-76 288.5 178 82.0
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 7.2e-76 288.1 214 74.3
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 7.2e-76 288.1 213 70.9
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 9.5e-76 287.7 213 70.9
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 9.5e-76 287.7 212 73.6
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 9.5e-76 287.7 210 73.8
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 1.2e-75 287.3 178 81.5
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.2e-75 287.3 147 93.2
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.2e-75 287.3 210 74.8
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 1.2e-75 287.3 212 75.5
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 1.6e-75 287.0 215 72.6
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 1.6e-75 287.0 211 73.5
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 1.6e-75 287.0 210 73.3
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 2.1e-75 286.6 178 81.5
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.1e-75 286.6 214 72.9
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 2.8e-75 286.2 160 87.5
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 2.8e-75 286.2 215 72.6
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 2.8e-75 286.2 214 71.5
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 3.6e-75 285.8 210 74.3
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 3.6e-75 285.8 210 72.9
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 3.6e-75 285.8 164 85.4
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 4.7e-75 285.4 210 71.9
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 6.1e-75 285.0 176 80.1
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 6.1e-75 285.0 215 72.1
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 8.0e-75 284.6 210 73.8
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 1.0e-74 284.3 210 71.4
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.0e-74 284.3 210 72.9
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 1.4e-74 283.9 185 78.4
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.4e-74 283.9 205 74.1
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.4e-74 283.9 205 74.1
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 1.4e-74 283.9 161 85.7
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.8e-74 283.5 213 71.4
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.8e-74 283.5 221 70.1
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 1.8e-74 283.5 201 74.1
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 2.3e-74 283.1 218 70.2
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 3.0e-74 282.7 210 72.4
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.0e-74 282.7 210 72.4
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 3.0e-74 282.7 159 86.8
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 4.0e-74 282.3 212 71.7
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 5.2e-74 282.0 211 72.5
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 5.2e-74 282.0 213 72.3
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 5.2e-74 282.0 144 93.1
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 5.2e-74 282.0 210 71.0
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 5.2e-74 282.0 210 71.4
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 6.8e-74 281.6 178 81.5
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 6.8e-74 281.6 166 84.9
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 6.8e-74 281.6 212 71.7
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 6.8e-74 281.6 213 71.4
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 6.8e-74 281.6 212 72.2
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 8.9e-74 281.2 212 72.2
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 8.9e-74 281.2 211 71.6
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 8.9e-74 281.2 171 81.9
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.2e-73 280.8 205 73.7
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 1.2e-73 280.8 210 72.4
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 1.5e-73 280.4 213 71.8
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 4.4e-73 278.9 214 71.5
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 4.4e-73 278.9 171 82.5
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 5.7e-73 278.5 216 69.4
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 5.7e-73 278.5 211 72.0
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 7.5e-73 278.1 216 70.8
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 9.8e-73 277.7 216 69.9
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 9.8e-73 277.7 213 71.4
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 2.2e-72 276.6 214 71.0
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 2.2e-72 276.6 209 70.3
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 2.9e-72 276.2 216 69.9
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 6.4e-72 275.0 197 71.1
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 1.4e-71 273.9 210 68.1
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 7.0e-71 271.6 212 71.2
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.6e-70 270.4 208 71.6
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 7.8e-70 268.1 208 70.7
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.0e-69 267.7 208 71.2
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.0e-69 267.7 208 71.2
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 1.7e-69 266.9 201 67.7
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.3e-69 266.5 159 84.9
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.3e-69 266.5 159 84.9
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 1.9e-68 263.5 146 84.2
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 3.3e-68 262.7 200 66.0
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.1e-67 260.0 204 69.1
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 4.7e-67 258.8 160 81.2
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 4.7e-67 258.8 187 71.1
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 1.8e-66 256.9 181 71.3
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 2.0e-65 253.4 165 77.0
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 3.4e-65 252.7 200 69.5
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 7.5e-65 251.5 208 64.9
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 2.9e-64 249.6 213 64.8
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 6.4e-64 248.4 220 62.3
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 1.1e-63 247.7 190 70.0
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 7.0e-63 245.0 210 68.1
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 7.8e-62 241.5 187 70.6
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 1.3e-61 240.7 155 78.7
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 1.9e-60 236.9 146 79.5
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 2.8e-59 233.0 143 78.3
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.8e-58 230.3 214 63.1
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 1.2e-57 227.6 159 72.3
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 3.7e-56 222.6 149 71.8
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 8.6e-53 211.5 217 58.1
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.3e-45 187.6 216 56.5
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 3.4e-41 172.9 212 53.3
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.7e-40 170.6 92 88.0
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.1e-34 151.4 184 51.1
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 7.9e-30 135.2 72 88.9
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 1.3e-13 81.3 109 49.5
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 5.1e-13 79.3 109 49.5
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 3.3e-12 76.6 109 48.6
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 3.1e-10 70.1 107 45.8


User provided reference genes

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