Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p02250 Brassica napus HOM05D000358 ORTHO05D009346 5.1e-102 374.4 186 100.0
BcaC04g24011 Brassica carinata HOM05D000358 ORTHO05D009346 2.7e-79 298.9 186 84.9
BolC9t53153H Brassica oleracea HOM05D000358 ORTHO05D009346 3.0e-78 295.4 186 84.4
BraA09t35864Z Brassica rapa HOM05D000358 ORTHO05D009346 1.1e-77 293.5 186 81.7
A09p02150 Brassica napus HOM05D000358 ORTHO05D009346 1.6e-76 289.7 184 81.5
BcaB05g23661 Brassica carinata HOM05D000358 ORTHO05D009346 2.0e-66 256.1 190 71.6
BcaC03g16171 Brassica carinata HOM05D000358 ORTHO05D009346 8.5e-65 250.8 187 71.1
C02p39090 Brassica napus HOM05D000358 ORTHO05D009346 8.5e-65 250.8 187 71.1
BolC2t09919H Brassica oleracea HOM05D000358 ORTHO05D009346 8.5e-65 250.8 187 71.1
AL6G50280 Arabidopsis lyrata HOM05D000358 ORTHO05D009346 1.9e-64 249.6 190 70.5
Sp6g02670 Schrenkiella parvula HOM05D000358 ORTHO05D009346 3.2e-64 248.8 187 70.1
A02p24950 Brassica napus HOM05D000358 ORTHO05D009346 2.7e-63 245.7 187 70.1
BraA02t07485Z Brassica rapa HOM05D000358 ORTHO05D009346 2.7e-63 245.7 187 70.1
Thhalv10029025m.g Eutrema salsugineum HOM05D000358 ORTHO05D009346 7.9e-63 244.2 192 68.8
AT4G02725 Arabidopsis thaliana HOM05D000358 ORTHO05D009346 1.4e-62 243.4 190 68.9
Carub.0006s3438 Capsella rubella HOM05D000358 ORTHO05D009346 4.3e-61 238.4 190 66.8
CARHR251060 Cardamine hirsuta HOM05D000358 ORTHO05D009346 3.4e-58 228.8 190 65.8
Aa31LG5G2370 Aethionema arabicum HOM05D000358 ORTHO05D009346 8.5e-49 197.6 177 61.6
THA.LOC104801239 Tarenaya hassleriana HOM05D000358 ORTHO05D009346 4.5e-42 175.3 187 51.9
Hund09500 Selenicereus undatus HOM05D000358 ORTHO05D009346 2.1e-39 166.4 135 59.3
Glyma.03G155200 Glycine max HOM05D000358 ORTHO05D009346 6.7e-38 161.4 192 49.0
CSS0040373 Camellia sinensis var. sinensis HOM05D000358 ORTHO05D009346 1.5e-37 160.2 187 48.1
Cpa.g.sc52.51 Carica papaya HOM05D000358 ORTHO05D009346 1.5e-37 160.2 163 52.8
TAR636G2394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 1.5e-37 160.2 187 48.1
GSVIVG01001163001 Vitis vinifera HOM05D000358 ORTHO05D009346 1.5e-37 160.2 180 46.7
AUR62028609 Chenopodium quinoa HOM05D000358 ORTHO05D009346 2.0e-37 159.8 197 48.2
TAR375G0394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 2.6e-37 159.5 174 48.9
Lj1A47T39 Lonicera japonica HOM05D000358 ORTHO05D009346 9.7e-37 157.5 178 48.3
CANSAT25G1780 Cannabis sativa HOM05D000358 ORTHO05D009346 1.3e-36 157.1 137 56.9
Manes.05G077400 Manihot esculenta HOM05D000358 ORTHO05D009346 2.8e-36 156.0 178 48.3
Phvul.001G152500 Phaseolus vulgaris HOM05D000358 ORTHO05D009346 1.1e-35 154.1 185 47.6
arahy.Tifrunner.gnm1.ann1.M7C8NM Arachis hypogaea HOM05D000358 ORTHO05D009346 1.4e-35 153.7 182 46.7
Nitab4.5_0004318g0030 Nicotiana tabacum HOM05D000358 ORTHO05D009346 1.4e-35 153.7 148 52.0
FvH4_2g23371 Fragaria vesca HOM05D000358 ORTHO05D009346 2.4e-35 152.9 135 54.1
arahy.Tifrunner.gnm1.ann1.1D6AAZ Arachis hypogaea HOM05D000358 ORTHO05D009346 4.1e-35 152.1 182 46.2
Nitab4.5_0005971g0010 Nicotiana tabacum HOM05D000358 ORTHO05D009346 5.3e-35 151.8 183 44.3
MBI04_g20822_MAGBIO Magnolia biondii HOM05D000358 ORTHO05D009346 9.1e-35 151.0 133 53.4
CsaV3_6G037210 Cucumis sativus L. HOM05D000358 ORTHO05D009346 1.2e-34 150.6 182 45.1
Duzib133G0337 Durio zibethinus HOM05D000358 ORTHO05D009346 1.2e-34 150.6 191 45.0
Rhsim13G0026100 Rhododendron simsii HOM05D000358 ORTHO05D009346 1.2e-34 150.6 130 55.4
RcHm_v2.0_Chr6g0290831 Rosa chinensis HOM05D000358 ORTHO05D009346 1.2e-34 150.6 194 44.8
Thecc.01G276900 Theobroma cacao HOM05D000358 ORTHO05D009346 1.2e-34 150.6 137 54.0
TWI14G1410 Tripterygium wilfordii HOM05D000358 ORTHO05D009346 1.2e-34 150.6 196 44.4
Ciclev10022514m.g Citrus clementina HOM05D000358 ORTHO05D009346 2.0e-34 149.8 137 52.6
ECA247G2961 Erigeron canadensis HOM05D000358 ORTHO05D009346 2.0e-34 149.8 131 55.0
Atru.chr5.1460 Acer truncatum HOM05D000358 ORTHO05D009346 2.7e-34 149.4 134 53.0
Dinv32921 Davidia involucrata HOM05D000358 ORTHO05D002525 2.7e-34 149.4 194 46.4
PSO210G0760 Papaver somniferum HOM05D000358 ORTHO05D009346 2.7e-34 149.4 183 44.3
Gorai.007G137700 Gossypium raimondii HOM05D000358 ORTHO05D009346 3.5e-34 149.1 187 44.9
PSO761G0166 Papaver somniferum HOM05D000358 ORTHO05D009346 3.5e-34 149.1 183 44.3
Sabra05G0160900 Salix brachista HOM05D000358 ORTHO05D009346 5.9e-34 148.3 135 54.1
CiPaw.07G090600 Carya illinoinensis HOM05D000358 ORTHO05D009346 1.3e-33 147.1 180 47.8
Lj1g0011093 Lotus japonicus HOM05D000358 ORTHO05D009346 1.3e-33 147.1 134 53.7
Eucgr.K03368 Eucalyptus grandis HOM05D000358 ORTHO05D009346 1.7e-33 146.7 177 45.8
HanXRQChr15g0466741 Helianthus annuus HOM05D000358 ORTHO05D009346 1.7e-33 146.7 139 52.5
Lsat_1_v5_gn_9_3480 Lactuca sativa HOM05D000358 ORTHO05D009346 2.2e-33 146.4 131 55.0
Peaxi162Scf00641g00315 Petunia axillaris HOM05D000358 ORTHO05D009346 2.2e-33 146.4 185 43.8
EL10Ac5g10557 Beta vulgaris HOM05D000358 ORTHO05D009346 2.9e-33 146.0 193 42.5
Gohir.D11G128700 Gossypium hirsutum HOM05D000358 ORTHO05D009346 2.9e-33 146.0 188 44.1
TPR.G35683 Trifolium pratense HOM05D000358 ORTHO05D009346 3.8e-33 145.6 129 57.4
Migut.N02045 Erythranthe guttata HOM05D000358 ORTHO05D009346 5.0e-33 145.2 129 55.0
Gohir.A11G123500 Gossypium hirsutum HOM05D000358 ORTHO05D009346 1.5e-32 143.7 187 44.4
Zm00001eb054110 Zea mays HOM05D000358 ORTHO05D009346 1.5e-32 143.7 128 53.9
Sopen09g027050 Solanum pennellii HOM05D000358 ORTHO05D009346 2.5e-32 142.9 168 42.9
SGA_v2.0_scaffold81G26022 Striga asiatica HOM05D000358 ORTHO05D009346 3.2e-32 142.5 178 44.9
Aqoxy2G03373 Aquilegia oxysepala HOM05D000358 ORTHO05D009346 4.2e-32 142.1 162 45.1
Prupe.8G239600 Prunus persica HOM05D000358 ORTHO05D009346 4.2e-32 142.1 196 43.4
Sed0015724 Sechium edule HOM05D000358 ORTHO05D009346 4.2e-32 142.1 172 44.8
MSTRG.12558 Avicennia marina HOM05D000358 ORTHO05D009346 5.5e-32 141.7 157 45.9
MD11G1284000 Malus domestica HOM05D000358 ORTHO05D009346 5.5e-32 141.7 196 43.4
Cc01_g19380 Coffea canephora HOM05D000358 ORTHO05D009346 9.4e-32 141.0 161 48.4
PGR044G2401 Punica granatum HOM05D000358 ORTHO05D009346 9.4e-32 141.0 135 53.3
Medtr7g095090 Medicago truncatula HOM05D000358 ORTHO05D009346 1.2e-31 140.6 195 43.6
Potri.005G210700 Populus trichocarpa HOM05D000358 ORTHO05D009346 4.7e-31 138.7 135 53.3
Actinidia09124 Actinidia chinensis HOM05D000358 ORTHO05D009346 2.3e-30 136.3 124 51.6
SalBow6G4489 Salvia bowleyana HOM05D000358 ORTHO05D009346 2.3e-30 136.3 134 50.0
Sc17g0001440 Simmondsia chinensis HOM05D000358 ORTHO05D009346 2.2e-28 129.8 123 54.5
HPP92_009591 Vanilla planifolia HOM05D002842 ORTHO05D003177 2.2e-28 129.8 176 42.6
Solyc09g065300.4 Solanum lycopersicum HOM05D000358 ORTHO05D009346 6.3e-28 128.3 156 42.3
Os03g0701300 Oryza sativa ssp. japonica HOM05D000358 ORTHO05D009346 3.1e-27 125.9 124 50.0
Lalb_Chr01g0020121 Lupinus albus HOM05D000358 ORTHO05D009346 7.0e-27 124.8 122 51.6
SMO180G0003 Selaginella moellendorffii HOM05D000358 ORTHO05D009346 1.2e-26 124.0 119 47.9
SMO340G0322 Selaginella moellendorffii HOM05D000104 ORTHO05D004059 1.2e-26 124.0 119 47.9
Mapoly0004s0031 Marchantia polymorpha HOM05D000358 ORTHO05D009346 2.7e-26 122.9 145 43.4
vmacro02584 Vaccinium macrocarpon HOM05D000358 ORTHO05D009346 1.3e-25 120.6 110 52.7
VMungo1383G1528 Vigna mungo HOM05D000358 ORTHO05D009346 5.0e-25 118.6 215 38.6
Hma1.2p1_0822F.1_g224410 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 1.5e-24 117.1 109 51.4
Hma1.2p1_0822F.1_g224420 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 1.5e-24 117.1 109 51.4
PGSC0003DMG400019331 Solanum tuberosum HOM05D000358 ORTHO05D009346 7.2e-24 114.8 122 49.2
Psat3g063840 Pisum sativum HOM05D000358 ORTHO05D009346 2.8e-23 112.8 168 41.7
COL.COLO4_09074 Corchorus olitorius HOM05D000358 ORTHO05D009346 3.6e-23 112.5 152 40.8
Pp3c26_14500 Physcomitrium patens HOM05D000358 ORTHO05D009346 8.0e-23 111.3 141 39.0
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 3.0e-22 109.4 124 48.4
ATR0332G065 Amborella trichopoda HOM05D000358 ORTHO05D009346 5.2e-22 108.6 107 48.6
Haze_04693 Corylus avellana HOM05D000358 ORTHO05D009346 4.4e-21 105.5 168 38.1
Atru.BG.13.p Acer truncatum HOM05D000358 ORTHO05D009346 7.5e-21 104.8 109 49.5
ClCG07G000330 Citrullus lanatus HOM05D000358 ORTHO05D009346 3.7e-20 102.4 162 40.1
Eucgr.L00778 Eucalyptus grandis HOM05D000358 ORTHO05D009346 4.9e-20 102.1 77 61.0
unitig_899.g15068 Utricularia gibba HOM05D000454 ORTHO05D000591 5.4e-19 98.6 76 61.8
AagrBONN_evm.TU.Sc2ySwM_362.2722 Anthoceros agrestis HOM05D000358 ORTHO05D009346 2.1e-15 86.7 100 42.0
Eucgr.C01960 Eucalyptus grandis HOM05D000358 ORTHO05D009346 5.2e-14 82.0 56 64.3
MELO3C014393.2 Cucumis melo HOM05D000358 ORTHO05D009346 1.9e-11 73.6 88 46.6
QL12p021343 Quercus lobata HOM05D000358 ORTHO05D009346 4.6e-10 68.9 79 49.4
Oeu029468.1 Olea europaea HOM05D000358 ORTHO05D009346 6.0e-10 68.6 90 45.6
Nn1g02275 Nelumbo nucifera HOM05D000358 ORTHO05D009346 8.6e-09 64.7 73 46.6
Ah.11g050550 Amaranthus hybridus HOM05D000358 ORTHO05D009346 9.5e-08 61.2 191 29.8


User provided reference genes

Program Settings