Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p01610 Brassica napus HOM05D001921 ORTHO05D001784 1.7e-79 299.3 154 100.0
BolC9t53094H Brassica oleracea HOM05D001921 ORTHO05D001784 5.5e-78 294.3 152 99.3
BcaC04g24030 Brassica carinata HOM05D001921 ORTHO05D001784 5.0e-71 271.2 154 92.2
A09p01490 Brassica napus HOM05D001921 ORTHO05D001784 1.5e-70 269.6 154 90.3
BraA09t35810Z Brassica rapa HOM05D001921 ORTHO05D001784 1.5e-70 269.6 154 90.3
BcaC04g24029 Brassica carinata HOM05D000361 ORTHO05D004243 1.2e-56 223.4 131 90.8
BcaB01g02085 Brassica carinata HOM05D001921 ORTHO05D001784 5.0e-55 218.0 168 75.0
Thhalv10029029m.g Eutrema salsugineum HOM05D001921 ORTHO05D001784 2.6e-43 179.1 164 64.6
Sp6g01920 Schrenkiella parvula HOM05D001921 ORTHO05D001784 4.4e-43 178.3 159 67.3
C03p38190 Brassica napus HOM05D001921 ORTHO05D001784 1.8e-36 156.4 157 63.1
BcaC01g06781 Brassica carinata HOM05D001921 ORTHO05D001784 4.0e-36 155.2 154 63.6
BolC3t16100H Brassica oleracea HOM05D001921 ORTHO05D001784 4.0e-36 155.2 154 63.6
CARHR249650 Cardamine hirsuta HOM05D001921 ORTHO05D001784 4.1e-33 145.2 167 57.5
Carub.0006s3519 Capsella rubella HOM05D001921 ORTHO05D001784 6.0e-32 141.4 163 57.1
A03p31290 Brassica napus HOM05D001921 ORTHO05D001784 7.8e-32 141.0 158 58.9
BcaB01g02407 Brassica carinata HOM05D001921 ORTHO05D001784 1.0e-31 140.6 154 59.1
BcaB01g02410 Brassica carinata HOM05D001921 ORTHO05D001784 1.0e-31 140.6 154 59.1
BraA03t12309Z Brassica rapa HOM05D001921 ORTHO05D001784 1.3e-31 140.2 158 58.9
BcaB01g02086 Brassica carinata HOM05D001921 ORTHO05D001784 1.9e-30 136.3 101 74.3
AL6G51210 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 3.1e-28 129.0 161 55.3
AT4G02040 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 1.3e-26 123.6 162 53.1
Cpa.g.sc46.103 Carica papaya HOM05D001921 ORTHO05D001784 1.2e-16 90.5 178 40.4
Duzib187G0406 Durio zibethinus HOM05D001921 ORTHO05D001784 2.7e-16 89.4 171 42.7
COL.COLO4_18732 Corchorus olitorius HOM05D001921 ORTHO05D001784 3.5e-16 89.0 172 43.0
QL02p091546 Quercus lobata HOM05D001921 ORTHO05D001784 6.0e-16 88.2 179 43.6
CiPaw.16G117000 Carya illinoinensis HOM05D001921 ORTHO05D001784 1.3e-15 87.0 161 43.5
Dinv41418 Davidia involucrata HOM05D001921 ORTHO05D001784 3.0e-15 85.9 164 42.7
Cfa020875 Carpinus fangiana HOM05D001921 ORTHO05D001784 3.9e-15 85.5 163 43.6
Nn2g12262 Nelumbo nucifera HOM05D001921 ORTHO05D001784 5.6e-14 81.6 168 41.1
Haze_19306 Corylus avellana HOM05D001921 ORTHO05D001784 1.6e-13 80.1 166 41.6
FAN26G0252 Fragaria x ananassa HOM05D001921 ORTHO05D001784 3.6e-13 79.0 176 39.2
Manes.16G126400 Manihot esculenta HOM05D001921 ORTHO05D001784 3.6e-13 79.0 129 42.6
FvH4_1g01550 Fragaria vesca HOM05D001921 ORTHO05D001784 4.8e-13 78.6 178 38.8
FAN23G0500 Fragaria x ananassa HOM05D001921 ORTHO05D001784 4.8e-13 78.6 176 37.5
CiPaw.15G179300 Carya illinoinensis HOM05D001921 ORTHO05D001784 6.2e-13 78.2 166 41.0
MD15G1158100 Malus domestica HOM05D001921 ORTHO05D001784 2.4e-12 76.3 189 37.6
FAN19G1379 Fragaria x ananassa HOM05D001921 ORTHO05D001784 4.0e-12 75.5 178 38.2
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 4.0e-12 75.5 137 39.4
TWI34G0586 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 4.0e-12 75.5 173 40.5
Dinv42904 Davidia involucrata HOM05D001921 ORTHO05D001784 5.3e-12 75.1 172 41.9
Dinv43197 Davidia involucrata HOM05D001921 ORTHO05D001784 5.3e-12 75.1 172 41.9
Gorai.010G110500 Gossypium raimondii HOM05D001921 ORTHO05D001784 5.3e-12 75.1 150 42.0
TAR383G0606 Trochodendron aralioides HOM05D001921 ORTHO05D001784 5.3e-12 75.1 170 38.2
FAN28G2602 Fragaria x ananassa HOM05D001921 ORTHO05D001784 6.9e-12 74.7 178 38.2
Gohir.D06G095900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 6.9e-12 74.7 150 42.0
Thecc.09G037400 Theobroma cacao HOM05D001921 ORTHO05D001784 6.9e-12 74.7 176 42.6
CiPaw.07G227300 Carya illinoinensis HOM05D001921 ORTHO05D001784 9.0e-12 74.3 132 42.4
MD02G1012300 Malus domestica HOM05D001921 ORTHO05D001784 9.0e-12 74.3 189 37.6
Manes.06G040800 Manihot esculenta HOM05D001921 ORTHO05D001784 1.2e-11 73.9 181 37.0
Gohir.A06G095800 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.5e-11 73.6 150 42.0
Gohir.A06G100200 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.5e-11 73.6 135 39.3
Gohir.D06G096000 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.0e-11 73.2 160 42.5
THA.LOC104826571 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 2.0e-11 73.2 131 38.9
CAN.G142.1 Capsicum annuum HOM05D001921 ORTHO05D001784 3.4e-11 72.4 155 37.4
Gohir.D06G102300 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.4e-11 72.4 135 38.5
Gorai.010G110700 Gossypium raimondii HOM05D001921 ORTHO05D001784 3.4e-11 72.4 160 41.9
Gorai.010G117300 Gossypium raimondii HOM05D001921 ORTHO05D001784 3.4e-11 72.4 135 38.5
Nitab4.5_0009186g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 3.4e-11 72.4 117 41.9
RcHm_v2.0_Chr2g0086511 Rosa chinensis HOM05D001921 ORTHO05D001784 3.4e-11 72.4 183 35.5
CSS0005509 Camellia sinensis var. sinensis HOM05D001921 ORTHO05D001784 4.5e-11 72.0 160 40.6
Ciclev10009542m.g Citrus clementina HOM05D001921 ORTHO05D001784 4.5e-11 72.0 102 47.1
Gohir.A06G095900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.8e-11 71.6 163 41.7
Prupe.7G253300 Prunus persica HOM05D001921 ORTHO05D001784 7.6e-11 71.2 188 37.2
Lalb_Chr11g0072831 Lupinus albus HOM05D001921 ORTHO05D001784 9.9e-11 70.9 114 43.0
Medtr4g116830 Medicago truncatula HOM05D001921 ORTHO05D001784 9.9e-11 70.9 176 40.3
Aqoxy7G03512 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 1.3e-10 70.5 177 35.0
CiPaw.08G008000 Carya illinoinensis HOM05D001921 ORTHO05D001784 1.7e-10 70.1 168 34.5
Nitab4.5_0002992g0090 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.7e-10 70.1 117 41.9
Duzib187G0974 Durio zibethinus HOM05D001921 ORTHO05D001784 2.2e-10 69.7 128 36.7
Phvul.003G175500 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 2.9e-10 69.3 169 42.6
Duzib168G1630 Durio zibethinus HOM05D001921 ORTHO05D001784 6.4e-10 68.2 160 34.4
Rhsim03G0253600 Rhododendron simsii HOM05D001921 ORTHO05D001784 6.4e-10 68.2 156 41.0
Glyma.17G104300 Glycine max HOM05D001921 ORTHO05D001784 8.4e-10 67.8 167 39.5
Psat4g034000 Pisum sativum HOM05D001921 ORTHO05D001784 8.4e-10 67.8 179 38.0
A03p61190 Brassica napus HOM05D001921 ORTHO05D001784 1.1e-09 67.4 166 30.7
Ca_03892_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 1.1e-09 67.4 159 38.4
ClCG11G003650 Citrullus lanatus HOM05D001921 ORTHO05D001784 1.1e-09 67.4 188 35.6
PGR102G2943 Punica granatum HOM05D001921 ORTHO05D001784 1.1e-09 67.4 94 46.8
COL.COLO4_18922 Corchorus olitorius HOM05D001921 ORTHO05D001784 1.4e-09 67.0 133 36.1
Actinidia23087 Actinidia chinensis HOM05D001921 ORTHO05D001784 1.9e-09 66.6 102 45.1
Dinv03420 Davidia involucrata HOM05D001921 ORTHO05D001784 1.9e-09 66.6 140 37.9
Lj6g0019201 Lotus japonicus HOM05D001921 ORTHO05D001784 1.9e-09 66.6 105 42.9
Peaxi162Scf00116g00043 Petunia axillaris HOM05D001921 ORTHO05D001784 2.4e-09 66.2 118 39.8
Cpa.g.sc127.3 Carica papaya HOM05D001921 ORTHO05D001784 3.2e-09 65.9 165 33.9
Prupe.1G486800 Prunus persica HOM05D001921 ORTHO05D001784 3.2e-09 65.9 160 35.0
Sabra18G0025100 Salix brachista HOM05D001921 ORTHO05D001784 3.2e-09 65.9 118 38.1
Atru.chr7.2506 Acer truncatum HOM05D001921 ORTHO05D001784 5.5e-09 65.1 193 31.6
Gohir.A07G030700 Gossypium hirsutum HOM05D001921 ORTHO05D001784 7.1e-09 64.7 136 40.4
Potri.018G022400 Populus trichocarpa HOM05D001921 ORTHO05D001784 7.1e-09 64.7 135 38.5
Dinv03521 Davidia involucrata HOM05D001921 ORTHO05D001784 9.3e-09 64.3 167 35.9
CAN.G1045.40 Capsicum annuum HOM05D001921 ORTHO05D001784 2.1e-08 63.2 136 38.2
DCAR_014829 Daucus carota HOM05D001921 ORTHO05D001784 2.1e-08 63.2 163 36.2
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 2.1e-08 63.2 154 34.4
Prupe.1G486700 Prunus persica HOM05D001921 ORTHO05D001784 2.1e-08 63.2 158 33.5
Sed0017709 Sechium edule HOM05D001921 ORTHO05D001784 2.1e-08 63.2 138 37.7
VMungo1215G2840 Vigna mungo HOM05D001921 ORTHO05D001784 2.1e-08 63.2 168 39.9
AUR62011266 Chenopodium quinoa HOM05D001921 ORTHO05D001784 2.7e-08 62.8 156 37.8
Sopen08g012070 Solanum pennellii HOM05D001921 ORTHO05D001784 2.7e-08 62.8 116 38.8
Psat1g022640 Pisum sativum HOM05D001921 ORTHO05D001784 3.5e-08 62.4 160 35.6
Solyc08g041860.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 3.5e-08 62.4 116 38.8
TPR.G15777 Trifolium pratense HOM05D001921 ORTHO05D001784 3.5e-08 62.4 174 39.1
BraA03t15157Z Brassica rapa HOM05D001921 ORTHO05D001784 4.6e-08 62.0 165 29.7
Hma1.2p1_0028F.1_g017215 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 4.6e-08 62.0 169 37.9
Hma1.2p1_2976F.1_g331170 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 6.0e-08 61.6 169 37.9
Actinidia38704 Actinidia chinensis HOM05D001921 ORTHO05D001784 7.9e-08 61.2 126 39.7
CANSAT11G0699 Cannabis sativa HOM05D001921 ORTHO05D001784 1.0e-07 60.8 193 33.2
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 1.0e-07 60.8 141 38.3
Oeu012641.1 Olea europaea HOM05D001921 ORTHO05D001784 1.0e-07 60.8 165 33.3
TWI32G1277 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 1.0e-07 60.8 180 32.8
TWI63G1839 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 1.0e-07 60.8 172 36.0
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 1.3e-07 60.5 163 35.6
MELO3C004451.2 Cucumis melo HOM05D001921 ORTHO05D001784 1.8e-07 60.1 195 32.8
DCAR_017895 Daucus carota HOM05D001921 ORTHO05D001784 1.8e-07 60.1 110 42.7
Gorai.001G036300 Gossypium raimondii HOM05D001921 ORTHO05D001784 1.8e-07 60.1 134 38.1
Sc14g0000060 Simmondsia chinensis HOM05D001921 ORTHO05D001784 1.8e-07 60.1 155 36.1
TPR.G22804 Trifolium pratense HOM05D001921 ORTHO05D001784 1.8e-07 60.1 146 37.0
TWI63G0810 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 1.8e-07 60.1 171 33.9
Gohir.D07G034600 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.3e-07 59.7 134 38.1
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 3.0e-07 59.3 148 33.8
RcHm_v2.0_Chr6g0297171 Rosa chinensis HOM05D014836 ORTHO05D001784 3.0e-07 59.3 171 33.3
Lj4g0015946 Lotus japonicus HOM05D001921 ORTHO05D001784 3.9e-07 58.9 102 39.2
Cfa013096 Carpinus fangiana HOM05D001921 ORTHO05D001784 5.1e-07 58.5 128 35.9
Ca_21607_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 5.1e-07 58.5 129 38.0
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 5.1e-07 58.5 107 37.4
Cfa013095 Carpinus fangiana HOM05D001921 ORTHO05D001784 6.7e-07 58.2 128 38.3
Manes.03G188600 Manihot esculenta HOM05D001921 ORTHO05D001784 8.7e-07 57.8 150 33.3
Medtr2g461300 Medicago truncatula HOM05D001921 ORTHO05D001784 8.7e-07 57.8 137 38.7
MD15G1131400 Malus domestica HOM05D001921 ORTHO05D001784 1.1e-06 57.4 175 33.7
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 1.1e-06 57.4 158 33.5
AUR62041439 Chenopodium quinoa HOM05D001921 ORTHO05D001784 1.5e-06 57.0 156 35.3
AUR62042019 Chenopodium quinoa HOM05D001921 ORTHO05D001784 1.5e-06 57.0 156 35.3
AUR62043765 Chenopodium quinoa HOM05D001921 ORTHO05D001784 1.5e-06 57.0 156 35.3
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.5e-06 57.0 141 36.2
CsaV3_2G003470 Cucumis sativus L. HOM05D001921 ORTHO05D001784 2.5e-06 56.2 189 33.3
Oeu030377.1 Olea europaea HOM05D001921 ORTHO05D001784 2.5e-06 56.2 145 33.8
Oeu032694.1 Olea europaea HOM05D001921 ORTHO05D001784 2.5e-06 56.2 129 37.2
SabraUnG0005100 Salix brachista HOM05D001921 ORTHO05D001784 2.5e-06 56.2 127 36.2
TAR625G0682 Trochodendron aralioides HOM05D001921 ORTHO05D001784 2.5e-06 56.2 175 33.7
Aa31sc859G10 Aethionema arabicum HOM05D001921 ORTHO05D001784 3.3e-06 55.8 97 33.0
Haze_21453 Corylus avellana HOM05D001921 ORTHO05D001784 4.3e-06 55.5 159 34.6
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 4.3e-06 55.5 149 34.2
Sabra06G0203000 Salix brachista HOM05D001921 ORTHO05D001784 4.3e-06 55.5 127 36.2
Actinidia32376 Actinidia chinensis HOM05D001921 ORTHO05D001784 5.6e-06 55.1 142 31.7
Haze_21461 Corylus avellana HOM05D001921 ORTHO05D001784 5.6e-06 55.1 127 35.4
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 7.4e-06 54.7 131 35.1
AT2G25250 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 7.4e-06 54.7 151 29.1
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 7.4e-06 54.7 160 31.2
Lsat_1_v5_gn_6_115320 Lactuca sativa HOM05D001921 ORTHO05D001784 7.4e-06 54.7 166 31.9
AL7G19870 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 9.6e-06 54.3 103 35.0
TAR625G1323 Trochodendron aralioides HOM05D001921 ORTHO05D001784 9.6e-06 54.3 176 32.4


User provided reference genes

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