Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p01450 Brassica napus HOM05D006913 ORTHO05D008720 1.6e-24 115.2 55 100.0
BolC9t53077H Brassica oleracea HOM05D006913 ORTHO05D008720 1.6e-24 115.2 55 100.0
BcaB01g02398 Brassica carinata HOM05D006913 ORTHO05D008720 3.4e-14 80.9 39 94.9
Carub.0006s3531 Capsella rubella HOM05D006913 ORTHO05D008720 3.4e-14 80.9 39 94.9
Thhalv10028983m.g Eutrema salsugineum HOM05D006913 ORTHO05D008720 3.4e-14 80.9 39 94.9
Sp6g01770 Schrenkiella parvula HOM05D006913 ORTHO05D008720 3.4e-14 80.9 39 94.9
THA.LOC104801315 Tarenaya hassleriana HOM05D006913 ORTHO05D008720 3.4e-14 80.9 39 94.9
BcaB01g02393 Brassica carinata HOM05D006913 ORTHO05D008720 1.7e-13 78.6 39 92.3
BcaC01g06792 Brassica carinata HOM05D006913 ORTHO05D008720 1.7e-13 78.6 39 92.3
A03p31400 Brassica napus HOM05D006913 ORTHO05D008720 1.7e-13 78.6 39 92.3
C03p38310 Brassica napus HOM05D006913 ORTHO05D008720 1.7e-13 78.6 39 92.3
BolC3t16112H Brassica oleracea HOM05D006913 ORTHO05D008720 1.7e-13 78.6 39 92.3
BraA03t12321Z Brassica rapa HOM05D006913 ORTHO05D008720 1.7e-13 78.6 39 92.3
AT4G01900 Arabidopsis thaliana HOM05D006913 ORTHO05D008720 2.9e-13 77.8 39 92.3
Thecc.01G320200 Theobroma cacao HOM05D006913 ORTHO05D008720 6.5e-13 76.6 39 89.7
Atru.chr5.924 Acer truncatum HOM05D006913 ORTHO05D008720 8.4e-13 76.3 39 87.2
MD09G1287900 Malus domestica HOM05D006913 ORTHO05D008720 1.4e-12 75.5 39 87.2
Prupe.3G005300 Prunus persica HOM05D006913 ORTHO05D008720 1.4e-12 75.5 39 87.2
ClCG09G004810 Citrullus lanatus HOM05D006913 ORTHO05D008720 2.5e-12 74.7 39 84.6
Aa31LG5G1440 Aethionema arabicum HOM05D006913 ORTHO05D008720 3.2e-12 74.3 39 84.6
AL6G51370 Arabidopsis lyrata HOM05D006913 ORTHO05D008720 3.2e-12 74.3 39 87.2
Ciclev10022378m.g Citrus clementina HOM05D006913 ORTHO05D008720 3.2e-12 74.3 39 84.6
HPP92_002654 Vanilla planifolia HOM05D006913 ORTHO05D008720 5.5e-12 73.6 39 84.6
HPP92_027922 Vanilla planifolia HOM05D006913 ORTHO05D008720 5.5e-12 73.6 39 84.6
Cpa.g.c29544.2 Carica papaya HOM05D006913 ORTHO05D008720 7.1e-12 73.2 39 84.6
Psat3g018680 Pisum sativum HOM05D006913 ORTHO05D008720 7.1e-12 73.2 39 84.6
Potri.002G191300 Populus trichocarpa HOM05D006913 ORTHO05D008720 7.1e-12 73.2 39 84.6
Sed0008492 Sechium edule HOM05D006913 ORTHO05D008720 9.3e-12 72.8 39 84.6
MELO3C023629.2 Cucumis melo HOM05D006913 ORTHO05D008720 1.2e-11 72.4 39 82.1
CsaV3_7G030270 Cucumis sativus L. HOM05D006913 ORTHO05D008720 1.2e-11 72.4 39 82.1
MD17G1280100 Malus domestica HOM05D006913 ORTHO05D008720 1.2e-11 72.4 39 84.6
Sed0005932 Sechium edule HOM05D006913 ORTHO05D008720 1.2e-11 72.4 39 82.1
Nn3g21840 Nelumbo nucifera HOM05D006913 ORTHO05D008720 1.6e-11 72.0 39 84.6
Nitab4.5_0001013g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 2.1e-11 71.6 46 67.4
Sabra02G0164300 Salix brachista HOM05D006913 ORTHO05D008720 2.1e-11 71.6 39 82.1
Duzib138G1774 Durio zibethinus HOM05D006913 ORTHO05D008720 2.7e-11 71.2 42 83.3
RcHm_v2.0_Chr3g0486731 Rosa chinensis HOM05D006913 ORTHO05D008720 2.7e-11 71.2 39 79.5
QL12p018506 Quercus lobata HOM05D006913 ORTHO05D008720 3.5e-11 70.9 39 82.1
MBI18_g11536_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 4.6e-11 70.5 39 79.5
PSO170G2504 Papaver somniferum HOM05D006913 ORTHO05D008720 7.9e-11 69.7 39 76.9
PSO724G1078 Papaver somniferum HOM05D006913 ORTHO05D008720 7.9e-11 69.7 39 76.9
Aqoxy5G02741 Aquilegia oxysepala HOM05D006913 ORTHO05D008720 1.0e-10 69.3 39 79.5
CSS0007691 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 1.3e-10 68.9 39 82.1
CSS0013168 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 1.3e-10 68.9 39 82.1
Cfa004859 Carpinus fangiana HOM05D006913 ORTHO05D008720 1.3e-10 68.9 39 82.1
Haze_05096 Corylus avellana HOM05D006913 ORTHO05D008720 1.3e-10 68.9 39 82.1
Hma1.2p1_0408F.1_g146440 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 1.3e-10 68.9 39 82.1
MBI18_g09652_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 1.3e-10 68.9 39 76.9
Nitab4.5_0000363g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 1.3e-10 68.9 39 82.1
Peaxi162Scf00058g00218 Petunia axillaris HOM05D006913 ORTHO05D008720 1.3e-10 68.9 39 82.1
SalBow3G0392 Salvia bowleyana HOM05D006913 ORTHO05D008720 1.3e-10 68.9 39 79.5
Solyc06g009400.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 1.3e-10 68.9 39 82.1
Sopen06g004130 Solanum pennellii HOM05D006913 ORTHO05D008720 1.3e-10 68.9 39 82.1
PGSC0003DMG400007277 Solanum tuberosum HOM05D006913 ORTHO05D008720 1.3e-10 68.9 39 82.1
TAR362G1022 Trochodendron aralioides HOM05D006913 ORTHO05D008720 1.3e-10 68.9 39 82.1
GSVIVG01028181001 Vitis vinifera HOM05D006913 ORTHO05D008720 1.3e-10 68.9 39 82.1
Migut.D00043 Erythranthe guttata HOM05D006913 ORTHO05D008720 1.8e-10 68.6 39 79.5
Nitab4.5_0003324g0110 Nicotiana tabacum HOM05D006913 ORTHO05D008720 1.8e-10 68.6 39 79.5
Os05g0133100 Oryza sativa ssp. japonica HOM05D006913 ORTHO05D008720 1.8e-10 68.6 39 76.9
TWI59G1195 Tripterygium wilfordii HOM05D006913 ORTHO05D008720 1.8e-10 68.6 39 79.5
CDE11G0810 Ceratophyllum demersum HOM05D006913 ORTHO05D008720 2.3e-10 68.2 39 74.4
FvH4_1g26590 Fragaria vesca HOM05D006913 ORTHO05D008720 2.3e-10 68.2 39 76.9
FAN19G0677 Fragaria x ananassa HOM05D006913 ORTHO05D008720 2.3e-10 68.2 39 76.9
FAN26G0114 Fragaria x ananassa HOM05D006913 ORTHO05D008720 2.3e-10 68.2 39 76.9
FAN28G1862 Fragaria x ananassa HOM05D006913 ORTHO05D008720 2.3e-10 68.2 39 76.9
Manes.01G231800 Manihot esculenta HOM05D006913 ORTHO05D008720 2.3e-10 68.2 39 79.5
TPR.G4038 Trifolium pratense HOM05D006913 ORTHO05D008720 3.0e-10 67.8 39 79.5
CAN.G1280.40 Capsicum annuum HOM05D006913 ORTHO05D008720 3.9e-10 67.4 39 79.5
Glyma.19G219300 Glycine max HOM05D006913 ORTHO05D008720 3.9e-10 67.4 39 76.9
Lalb_Chr04g0260061 Lupinus albus HOM05D006913 ORTHO05D008720 3.9e-10 67.4 39 76.9
Mapoly0061s0127 Marchantia polymorpha HOM05D006913 ORTHO05D008720 3.9e-10 67.4 39 74.4
arahy.Tifrunner.gnm1.ann1.6PPK8V Arachis hypogaea HOM05D006913 ORTHO05D008720 5.1e-10 67.0 39 79.5
arahy.Tifrunner.gnm1.ann1.IRZ7G5 Arachis hypogaea HOM05D006913 ORTHO05D008720 5.1e-10 67.0 39 79.5
Glyma.03G222100 Glycine max HOM05D006913 ORTHO05D008720 5.1e-10 67.0 40 72.5
Sc05g0000220 Simmondsia chinensis HOM05D006913 ORTHO05D008720 5.1e-10 67.0 39 76.9
Medtr7g109970 Medicago truncatula HOM05D006913 ORTHO05D008720 8.7e-10 66.2 39 76.9
VMungo1383G0882 Vigna mungo HOM05D006913 ORTHO05D008720 8.7e-10 66.2 39 76.9
Lj1g0024926 Lotus japonicus HOM05D006913 ORTHO05D008720 1.5e-09 65.5 39 76.9
Nitab4.5_0000222g0190 Nicotiana tabacum HOM05D006913 ORTHO05D008720 1.5e-09 65.5 36 80.6
Dinv33147 Davidia involucrata HOM05D006913 ORTHO05D008720 1.9e-09 65.1 39 76.9
ATR0693G068 Amborella trichopoda HOM05D006913 ORTHO05D008720 2.5e-09 64.7 39 71.8
Cc01_g21970 Coffea canephora HOM05D006913 ORTHO05D008720 2.5e-09 64.7 39 74.4
SEGI_19322 Sequoiadendron giganteum HOM05D006913 ORTHO05D008720 2.5e-09 64.7 39 74.4
unitig_578.g16634 Utricularia gibba HOM05D006913 ORTHO05D008720 2.5e-09 64.7 39 74.4
MSTRG.21716 Avicennia marina HOM05D006913 ORTHO05D008720 3.3e-09 64.3 39 74.4
CiPaw.07G121500 Carya illinoinensis HOM05D006913 ORTHO05D008720 3.3e-09 64.3 38 78.9
Dinv12109 Davidia involucrata HOM05D006913 ORTHO05D008720 3.3e-09 64.3 39 76.9
Pp3c4_15530 Physcomitrium patens HOM05D006913 ORTHO05D008720 3.3e-09 64.3 39 74.4
Oeu038057.1 Olea europaea HOM05D006913 ORTHO05D008720 5.7e-09 63.5 36 80.6
Phvul.001G215500 Phaseolus vulgaris HOM05D006913 ORTHO05D008720 9.7e-09 62.8 38 73.7
AagrBONN_evm.TU.Sc2ySwM_228.182 Anthoceros agrestis HOM05D006913 ORTHO05D008720 3.7e-08 60.8 39 71.8
PGR083G1650 Punica granatum HOM05D006913 ORTHO05D008720 6.3e-08 60.1 53 58.5
DCAR_002917 Daucus carota HOM05D006913 ORTHO05D008720 2.4e-07 58.2 38 65.8
SGA_v2.0_scaffold80G25710 Striga asiatica HOM05D006913 ORTHO05D008720 4.1e-07 57.4 31 83.9
FAN23G2363 Fragaria x ananassa HOM05D000049 ORTHO05D000027 9.0e-07 56.2 32 81.2
COL.COLO4_23180 Corchorus olitorius HOM05D006913 ORTHO05D008720 2.0e-06 55.1 26 96.2
Eucgr.L01805 Eucalyptus grandis HOM05D006913 ORTHO05D008720 2.6e-06 54.7 39 64.1
AUR62024592 Chenopodium quinoa HOM05D006913 ORTHO05D008720 4.5e-06 53.9 30 83.3
Eucgr.H00899 Eucalyptus grandis HOM05D006913 ORTHO05D008720 4.5e-06 53.9 30 83.3
Hund09668 Selenicereus undatus HOM05D006913 ORTHO05D008720 4.5e-06 53.9 30 83.3
Rhsim01G0292800 Rhododendron simsii HOM05D006913 ORTHO05D008720 7.7e-06 53.1 44 65.9
vmacro15097 Vaccinium macrocarpon HOM05D006913 ORTHO05D008720 1.0e-05 52.8 30 83.3


User provided reference genes

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