Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p01290 Brassica napus HOM05D004916 ORTHO05D006147 7.2e-125 450.7 239 100.0
BcaC04g24078 Brassica carinata HOM05D004916 ORTHO05D006147 1.2e-119 433.3 231 99.1
BolC9t53063H Brassica oleracea HOM05D004916 ORTHO05D006147 2.6e-111 405.6 237 92.4
A09p01200 Brassica napus HOM05D004916 ORTHO05D006147 2.5e-109 399.1 240 90.4
BraA09t35790Z Brassica rapa HOM05D004916 ORTHO05D006147 2.5e-109 399.1 240 90.4
Thhalv10028918m.g Eutrema salsugineum HOM05D004916 ORTHO05D006147 9.4e-101 370.5 240 80.0
Sp6g01560 Schrenkiella parvula HOM05D004916 ORTHO05D006147 2.8e-97 359.0 242 76.4
BcaB01g02376 Brassica carinata HOM05D004916 ORTHO05D006147 7.7e-95 350.9 240 76.2
BcaC01g06807 Brassica carinata HOM05D004916 ORTHO05D006147 1.8e-91 339.7 236 79.2
BolC3t16124H Brassica oleracea HOM05D004916 ORTHO05D006147 1.8e-91 339.7 236 79.2
C03p38500 Brassica napus HOM05D004916 ORTHO05D006147 2.3e-91 339.3 237 79.7
A03p31520 Brassica napus HOM05D004916 ORTHO05D006147 4.0e-91 338.6 236 80.5
BraA03t12331Z Brassica rapa HOM05D004916 ORTHO05D006147 4.0e-91 338.6 236 80.5
Carub.0006s3554 Capsella rubella HOM05D004916 ORTHO05D006147 4.1e-88 328.6 248 75.4
CARHR250000 Cardamine hirsuta HOM05D004916 ORTHO05D006147 2.9e-86 322.4 243 76.1
AT4G01670 Arabidopsis thaliana HOM05D004916 ORTHO05D006147 1.9e-85 319.7 252 75.4
AL6G51680 Arabidopsis lyrata HOM05D004916 ORTHO05D006147 2.6e-82 309.3 248 74.2
Aa31LG5G1380 Aethionema arabicum HOM05D004916 ORTHO05D006147 6.0e-71 271.6 254 66.5
THA.LOC104815913 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 4.6e-63 245.4 275 57.5
THA.LOC104825924 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 2.3e-54 216.5 260 55.0
Manes.05G007300 Manihot esculenta HOM05D004916 ORTHO05D006147 5.1e-38 162.2 256 44.5
Potri.014G111000 Populus trichocarpa HOM05D004916 ORTHO05D006147 6.6e-38 161.8 289 41.9
Sabra14G0081700 Salix brachista HOM05D004916 ORTHO05D006147 8.7e-38 161.4 289 41.9
Thecc.01G327100 Theobroma cacao HOM05D004916 ORTHO05D006147 1.3e-36 157.5 292 39.4
Duzib138G0475 Durio zibethinus HOM05D004916 ORTHO05D006147 1.6e-36 157.1 287 41.1
Potri.002G185700 Populus trichocarpa HOM05D004916 ORTHO05D006147 4.8e-36 155.6 274 42.0
Manes.01G235900 Manihot esculenta HOM05D004916 ORTHO05D006147 6.2e-36 155.2 253 45.5
Cpa.g.sc57.33 Carica papaya HOM05D004916 ORTHO05D006147 2.4e-35 153.3 243 45.3
Eucgr.A00995 Eucalyptus grandis HOM05D004916 ORTHO05D006147 5.3e-35 152.1 230 47.4
Duzib133G0180 Durio zibethinus HOM05D004916 ORTHO05D006147 9.0e-35 151.4 289 40.8
Ciclev10021551m.g Citrus clementina HOM05D004916 ORTHO05D006147 2.0e-34 150.2 280 41.8
COL.COLO4_23106 Corchorus olitorius HOM05D004916 ORTHO05D006147 3.4e-34 149.4 304 41.4
Sabra02G0148800 Salix brachista HOM05D004916 ORTHO05D006147 5.8e-34 148.7 272 41.9
Atru.chr5.842 Acer truncatum HOM05D004916 ORTHO05D006147 2.2e-33 146.7 303 38.3
CiPaw.08G082200 Carya illinoinensis HOM05D004916 ORTHO05D006147 2.9e-33 146.4 323 38.4
TWI23G0103 Tripterygium wilfordii HOM05D004916 ORTHO05D006147 1.4e-32 144.1 202 48.0
Ca_09253_v3 Cicer arietinum L. HOM05D004916 ORTHO05D006147 3.2e-32 142.9 262 41.6
TAR636G0286 Trochodendron aralioides HOM05D004916 ORTHO05D006147 3.2e-32 142.9 248 41.1
QL12p035219 Quercus lobata HOM05D004916 ORTHO05D006147 4.2e-32 142.5 230 43.9
TAR362G0875 Trochodendron aralioides HOM05D004916 ORTHO05D006147 5.4e-32 142.1 182 49.5
TPR.G8393 Trifolium pratense HOM05D004916 ORTHO05D006147 9.3e-32 141.4 285 43.2
TAR362G0057 Trochodendron aralioides HOM05D004916 ORTHO05D006147 1.2e-31 141.0 201 48.3
Medtr7g110880 Medicago truncatula HOM05D004916 ORTHO05D006147 1.6e-31 140.6 259 42.9
Cfa004923 Carpinus fangiana HOM05D004916 ORTHO05D006147 2.1e-31 140.2 310 38.1
Lj1g0011620 Lotus japonicus HOM05D004916 ORTHO05D006147 2.1e-31 140.2 262 41.6
Gorai.007G118300 Gossypium raimondii HOM05D004916 ORTHO05D006147 2.7e-31 139.8 290 41.0
Psat3g016360 Pisum sativum HOM05D004916 ORTHO05D006147 2.7e-31 139.8 254 45.7
Gohir.A12G119000 Gossypium hirsutum HOM05D004916 ORTHO05D006147 4.6e-31 139.0 277 40.8
PSO761G0152 Papaver somniferum HOM05D004916 ORTHO05D006147 1.0e-30 137.9 227 42.7
Gohir.D12G122800 Gossypium hirsutum HOM05D004916 ORTHO05D006147 1.3e-30 137.5 277 40.8
Gorai.001G148600 Gossypium raimondii HOM05D004916 ORTHO05D006147 1.3e-30 137.5 277 38.3
Gorai.008G133600 Gossypium raimondii HOM05D004916 ORTHO05D006147 1.3e-30 137.5 277 40.8
PSO210G3767 Papaver somniferum HOM05D004916 ORTHO05D006147 1.3e-30 137.5 227 42.7
Nn4g25313 Nelumbo nucifera HOM05D004916 ORTHO05D006147 2.3e-30 136.7 283 40.6
Gohir.D11G110600 Gossypium hirsutum HOM05D004916 ORTHO05D006147 3.9e-30 136.0 290 40.3
PGR042G3904 Punica granatum HOM05D004916 ORTHO05D006147 3.9e-30 136.0 274 40.1
TWI14G0993 Tripterygium wilfordii HOM05D004916 ORTHO05D006147 3.9e-30 136.0 291 38.8
TAR633G1842 Trochodendron aralioides HOM05D004916 ORTHO05D006147 1.5e-29 134.0 227 44.9
Haze_05162 Corylus avellana HOM05D004916 ORTHO05D006147 1.9e-29 133.7 316 36.4
Gohir.A07G132300 Gossypium hirsutum HOM05D004916 ORTHO05D006147 2.5e-29 133.3 280 37.5
Gohir.A11G105700 Gossypium hirsutum HOM05D004916 ORTHO05D006147 2.8e-28 129.8 289 38.8
CSS0009622 Camellia sinensis var. sinensis HOM05D004916 ORTHO05D006147 3.7e-28 129.4 278 42.1
Gohir.D07G136500 Gossypium hirsutum HOM05D004916 ORTHO05D006147 4.8e-28 129.0 283 36.7
VMungo1383G1740 Vigna mungo HOM05D004916 ORTHO05D006147 4.8e-28 129.0 244 41.8
Glyma.03G225300 Glycine max HOM05D004916 ORTHO05D006147 8.1e-28 128.3 267 38.2
A09p54150 Brassica napus HOM05D004916 ORTHO05D006147 1.8e-27 127.1 253 45.8
Lalb_Chr15g0077851 Lupinus albus HOM05D004916 ORTHO05D006147 1.8e-27 127.1 278 40.3
TAR553G0002 Trochodendron aralioides HOM05D004916 ORTHO05D006147 2.4e-27 126.7 269 38.7
Lalb_Chr18g0046341 Lupinus albus HOM05D004916 ORTHO05D006147 5.3e-27 125.6 281 37.0
CiPaw.07G126700 Carya illinoinensis HOM05D004916 ORTHO05D006147 9.0e-27 124.8 262 39.3
Phvul.001G219100 Phaseolus vulgaris HOM05D004916 ORTHO05D006147 9.0e-27 124.8 277 39.4
TAR365G1046 Trochodendron aralioides HOM05D004916 ORTHO05D006147 1.5e-26 124.0 274 37.6
BraA09t40829Z Brassica rapa HOM05D004916 ORTHO05D006147 3.4e-26 122.9 264 46.6
Sp5g01300 Schrenkiella parvula HOM05D004916 ORTHO05D006147 7.6e-26 121.7 277 40.1
C08p37030 Brassica napus HOM05D004916 ORTHO05D006147 1.3e-25 120.9 264 45.1
Prupe.3G001400 Prunus persica HOM05D004916 ORTHO05D006147 1.7e-25 120.6 259 37.5
GSVIVG01028232001 Vitis vinifera HOM05D004916 ORTHO05D006147 1.7e-25 120.6 96 65.6
AL5G44750 Arabidopsis lyrata HOM05D004916 ORTHO05D006147 2.2e-25 120.2 268 39.9
BolC8t51280H Brassica oleracea HOM05D004916 ORTHO05D006147 3.8e-25 119.4 264 45.5
Glyma.19G222300 Glycine max HOM05D004916 ORTHO05D006147 8.4e-25 118.2 271 37.6
Thhalv10006193m.g Eutrema salsugineum HOM05D004916 ORTHO05D006147 1.1e-24 117.9 261 39.5
Carub.0005s2882 Capsella rubella HOM05D004916 ORTHO05D006147 1.4e-24 117.5 268 40.3
AT3G62070 Arabidopsis thaliana HOM05D004916 ORTHO05D006147 2.4e-24 116.7 272 39.3
THA.LOC104827649 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 5.5e-24 115.5 252 38.1
MD00G1137300 Malus domestica HOM05D004916 ORTHO05D006147 9.3e-24 114.8 296 37.5
AT2G46940 Arabidopsis thaliana HOM05D004916 ORTHO05D006147 1.6e-23 114.0 251 39.8
Carub.0004s2967 Capsella rubella HOM05D004916 ORTHO05D006147 2.1e-23 113.6 252 38.5
Lj5g0005115 Lotus japonicus HOM05D004916 ORTHO05D006147 1.0e-22 111.3 239 41.0
FAN19G1053 Fragaria x ananassa HOM05D004916 ORTHO05D006147 1.3e-22 110.9 265 37.4
FAN23G1874 Fragaria x ananassa HOM05D004916 ORTHO05D006147 1.3e-22 110.9 267 36.0
CSS0004254 Camellia sinensis var. sinensis HOM05D004916 ORTHO05D006147 1.8e-22 110.5 98 61.2
CANSAT25G0633 Cannabis sativa HOM05D004916 ORTHO05D006147 3.0e-22 109.8 240 42.5
FvH4_1g26130 Fragaria vesca HOM05D004916 ORTHO05D006147 3.0e-22 109.8 265 38.1
MBI18_g03855_MAGBIO Magnolia biondii HOM05D004916 ORTHO05D006147 5.1e-22 109.0 93 62.4
Aa31LG10G16040 Aethionema arabicum HOM05D004916 ORTHO05D006147 6.7e-22 108.6 231 39.0
FAN26G2369 Fragaria x ananassa HOM05D004916 ORTHO05D006147 3.3e-21 106.3 268 38.1
AL4G46410 Arabidopsis lyrata HOM05D004916 ORTHO05D006147 4.3e-21 105.9 239 38.1
RcHm_v2.0_Chr3g0485631 Rosa chinensis HOM05D004916 ORTHO05D006147 9.6e-21 104.8 285 35.8
DCAR_002943 Daucus carota HOM05D004916 ORTHO05D006147 1.6e-20 104.0 100 57.0
BcaC02g12625 Brassica carinata HOM05D004916 ORTHO05D006147 2.1e-20 103.6 265 37.0
Thhalv10001588m.g Eutrema salsugineum HOM05D004916 ORTHO05D006147 2.1e-20 103.6 250 36.0
FAN28G2008 Fragaria x ananassa HOM05D004916 ORTHO05D006147 2.8e-20 103.2 259 35.5
Aqoxy5G02859 Aquilegia oxysepala HOM05D004916 ORTHO05D006147 3.7e-20 102.8 275 34.9
CARHR142290 Cardamine hirsuta HOM05D004916 ORTHO05D006147 3.7e-20 102.8 244 38.1
C04p01040 Brassica napus HOM05D004916 ORTHO05D006147 4.8e-20 102.4 265 37.7
BolC4t21757H Brassica oleracea HOM05D004916 ORTHO05D006147 4.8e-20 102.4 265 37.7
DCAR_005711 Daucus carota HOM05D004916 ORTHO05D006147 4.8e-20 102.4 263 38.8
BolC3t15423H Brassica oleracea HOM05D004916 ORTHO05D006147 1.8e-19 100.5 264 38.3
BcaC01g05053 Brassica carinata HOM05D004916 ORTHO05D006147 2.4e-19 100.1 239 38.9
C03p30740 Brassica napus HOM05D004916 ORTHO05D006147 2.4e-19 100.1 239 38.9
BraA05t19090Z Brassica rapa HOM05D004916 ORTHO05D006147 3.1e-19 99.8 264 36.7
A05p00890 Brassica napus HOM05D004916 ORTHO05D006147 5.3e-19 99.0 264 36.7
BcaB01g03195 Brassica carinata HOM05D004916 ORTHO05D006147 6.9e-19 98.6 269 37.9
BcaC02g12821 Brassica carinata HOM05D004916 ORTHO05D006147 6.9e-19 98.6 267 36.0
BcaB01g03196 Brassica carinata HOM05D004916 ORTHO05D006147 9.0e-19 98.2 252 37.7
PSO170G5346 Papaver somniferum HOM05D004916 ORTHO05D006147 9.0e-19 98.2 240 34.6
PSO357G0289 Papaver somniferum HOM05D004916 ORTHO05D006147 2.6e-18 96.7 240 35.4
A03p25790 Brassica napus HOM05D004916 ORTHO05D006147 5.8e-18 95.5 264 37.5
BcaC07g40699 Brassica carinata HOM05D004916 ORTHO05D006147 7.6e-18 95.1 229 44.1
arahy.Tifrunner.gnm1.ann1.Y1689U Arachis hypogaea HOM05D004916 ORTHO05D006147 1.7e-17 94.0 237 34.2
BraA03t11793Z Brassica rapa HOM05D004916 ORTHO05D006147 4.9e-17 92.4 264 36.4
CDE11G0113 Ceratophyllum demersum HOM05D004916 ORTHO05D006147 1.3e-14 84.3 228 36.0
MBI18_g28911_MAGBIO Magnolia biondii HOM05D004916 ORTHO05D006147 3.9e-14 82.8 223 35.4
Os01g0284900 Oryza sativa ssp. japonica HOM05D004916 ORTHO05D006147 5.1e-14 82.4 224 37.1
Glyma.02G006700 Glycine max HOM05D004916 ORTHO05D006147 1.1e-13 81.3 79 58.2
Phvul.007G208300 Phaseolus vulgaris HOM05D004916 ORTHO05D006147 2.5e-13 80.1 241 34.0
CARHR172410 Cardamine hirsuta HOM05D004916 ORTHO05D006147 3.7e-12 76.3 239 35.6
Gorai.004G147700 Gossypium raimondii HOM05D004916 ORTHO05D006147 2.4e-11 73.6 233 35.2
HPP92_012762 Vanilla planifolia HOM05D004916 ORTHO05D006147 2.4e-11 73.6 215 33.0
ATR0796G037 Amborella trichopoda HOM05D004916 ORTHO05D006147 5.3e-11 72.4 231 33.8
Zm00001eb129480 Zea mays HOM05D004916 ORTHO05D006147 2.0e-10 70.5 240 32.5
Rhsim01G0293600 Rhododendron simsii HOM05D004916 ORTHO05D006147 3.4e-10 69.7 231 32.5
Gohir.A08G121950 Gossypium hirsutum HOM05D004916 ORTHO05D006147 1.3e-09 67.8 89 51.7
BcaC02g09022 Brassica carinata HOM05D004916 ORTHO05D006147 8.5e-09 65.1 175 32.6
BcaC02g12602 Brassica carinata HOM05D004916 ORTHO05D006147 1.1e-08 64.7 175 32.0
Actinidia25874 Actinidia chinensis HOM05D004916 ORTHO05D006147 2.5e-08 63.5 102 44.1
Zm00001eb417630 Zea mays HOM05D004916 ORTHO05D037121 7.2e-08 62.0 83 47.0
Aa31LG1G28300 Aethionema arabicum HOM05D004916 ORTHO05D006147 9.4e-08 61.6 61 60.7
arahy.Tifrunner.gnm1.ann1.GVI4HJ Arachis hypogaea HOM05D004916 ORTHO05D006147 3.6e-07 59.7 81 45.7
Zm00001eb354450 Zea mays HOM05D004916 ORTHO05D037121 1.8e-06 57.4 134 36.6


User provided reference genes

Program Settings