Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p01210 Brassica napus HOM05D006232 ORTHO05D007746 0.0e+00 1095.5 780 100.0
BolC9t53055H Brassica oleracea HOM05D006232 ORTHO05D007746 2.7e-311 1071.6 781 98.5
BcaC04g24085 Brassica carinata HOM05D006232 ORTHO05D007746 2.2e-300 1035.4 781 93.2
BraA09t35784Z Brassica rapa HOM05D006232 ORTHO05D007746 1.3e-284 983.0 781 92.6
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 1.1e-280 969.9 786 88.0
A09p01130 Brassica napus HOM05D006232 ORTHO05D007746 3.7e-279 964.9 782 90.8
Sp6g01480 Schrenkiella parvula HOM05D006232 ORTHO05D007746 1.1e-203 714.1 806 73.6
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 4.5e-200 702.2 811 72.5
Thhalv10028437m.g Eutrema salsugineum HOM05D006232 ORTHO05D007746 7.6e-200 701.4 805 73.0
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 3.8e-199 699.1 807 72.9
Carub.0006s3563 Capsella rubella HOM05D006232 ORTHO05D007746 7.4e-187 658.3 807 70.0
CARHR250090 Cardamine hirsuta HOM05D006232 ORTHO05D007746 9.0e-177 624.8 799 68.6
Aa31LG5G1290 Aethionema arabicum HOM05D006232 ORTHO05D007746 9.7e-171 604.7 798 67.5
THA.LOC104801339 Tarenaya hassleriana HOM05D006232 ORTHO05D007746 3.5e-160 569.7 803 64.1
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 6.8e-140 502.3 650 51.5
Migut.F01833 Erythranthe guttata HOM05D006232 ORTHO05D007746 1.2e-131 474.9 639 50.7
SalBow8G3454 Salvia bowleyana HOM05D006232 ORTHO05D007746 4.7e-125 453.0 653 47.2
Solyc11g008760.3 Solanum lycopersicum HOM05D006232 ORTHO05D007746 2.3e-124 450.7 626 50.8
Sopen11g004540 Solanum pennellii HOM05D006232 ORTHO05D007746 9.8e-123 445.3 615 51.4
CAN.G691.16 Capsicum annuum HOM05D006232 ORTHO05D007746 1.9e-121 441.0 625 50.9
PGSC0003DMG400016173 Solanum tuberosum HOM05D006232 ORTHO05D007746 4.1e-121 439.9 615 51.4
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 5.4e-121 439.5 659 54.3
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 1.2e-120 438.3 618 53.1
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 1.7e-119 434.5 643 50.2
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 2.8e-117 427.2 660 53.5
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 3.1e-116 423.7 656 53.5
Phvul.011G061000 Phaseolus vulgaris HOM05D006232 ORTHO05D007746 4.4e-115 419.9 635 47.9
CiPaw.11G045400 Carya illinoinensis HOM05D006232 ORTHO05D007746 7.5e-115 419.1 799 57.3
CSS0005474 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 2.4e-113 414.1 683 51.7
MSTRG.8185 Avicennia marina HOM05D006232 ORTHO05D007746 4.1e-113 413.3 654 45.1
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 4.1e-113 413.3 640 53.4
Atru.chr5.807 Acer truncatum HOM05D006232 ORTHO05D007746 1.2e-112 411.8 629 55.8
CSS0021551 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 2.7e-112 410.6 683 51.5
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 4.6e-112 409.8 655 52.8
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 2.3e-111 407.5 774 56.7
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 2.3e-108 397.5 667 48.6
Sabra02G0132400 Salix brachista HOM05D006232 ORTHO05D007746 1.2e-107 395.2 628 54.3
Potri.002G182900 Populus trichocarpa HOM05D006232 ORTHO05D007746 5.8e-107 392.9 628 54.3
arahy.Tifrunner.gnm1.ann1.NHK9RM Arachis hypogaea HOM05D006232 ORTHO05D007746 7.1e-105 386.0 637 41.1
Rhsim06G0114200 Rhododendron simsii HOM05D006232 ORTHO05D007746 3.5e-104 383.6 691 49.1
Gohir.D07G137500 Gossypium hirsutum HOM05D006232 ORTHO05D007746 4.0e-100 370.2 672 49.9
vmacro04311 Vaccinium macrocarpon HOM05D006232 ORTHO05D007746 1.2e-99 368.6 675 48.7
Sc15g0005080 Simmondsia chinensis HOM05D006232 ORTHO05D007746 2.0e-99 367.9 653 50.4
Potri.002G183100 Populus trichocarpa HOM05D006232 ORTHO05D007746 1.3e-98 365.2 628 52.5
Haze_15770 Corylus avellana HOM05D006232 ORTHO05D007746 2.4e-97 360.9 649 51.3
Prupe.2G203600 Prunus persica HOM05D006232 ORTHO05D007746 7.1e-97 359.4 644 50.3
Actinidia23019 Actinidia chinensis HOM05D006232 ORTHO05D007746 2.7e-96 357.5 667 49.6
DCAR_015569 Daucus carota HOM05D006232 ORTHO05D007746 4.6e-96 356.7 642 49.8
Gorai.001G149600 Gossypium raimondii HOM05D006232 ORTHO05D007746 6.0e-96 356.3 648 50.3
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 1.3e-95 355.1 648 49.5
CSS0047958 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 1.3e-95 355.1 679 48.5
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 1.7e-95 354.8 640 50.5
arahy.Tifrunner.gnm1.ann1.E4FCEH Arachis hypogaea HOM05D006232 ORTHO05D007746 5.1e-95 353.2 658 46.4
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 6.6e-95 352.8 669 48.6
Nitab4.5_0000743g0190 Nicotiana tabacum HOM05D006232 ORTHO05D007746 6.6e-95 352.8 550 50.0
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 8.7e-95 352.4 670 48.4
arahy.Tifrunner.gnm1.ann1.YGP4KT Arachis hypogaea HOM05D006232 ORTHO05D007746 2.5e-94 350.9 658 47.0
Peaxi162Scf00254g00041 Petunia axillaris HOM05D006232 ORTHO05D007746 7.3e-94 349.4 528 55.3
FAN10G2312 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.6e-93 348.2 615 48.5
VMungo1127G1689 Vigna mungo HOM05D006232 ORTHO05D007746 2.8e-93 347.4 636 48.9
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 8.1e-93 345.9 647 47.4
Gohir.A07G133100 Gossypium hirsutum HOM05D006232 ORTHO05D007746 1.4e-92 345.1 648 49.5
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 1.8e-92 344.7 651 48.5
PSO782G2059 Papaver somniferum HOM05D006232 ORTHO05D007746 9.9e-91 339.0 650 47.5
FAN03G0759 Fragaria x ananassa HOM05D006232 ORTHO05D007746 2.3e-87 327.8 635 47.7
Peaxi162Scf00890g00001 Petunia axillaris HOM05D006232 ORTHO05D007746 2.3e-87 327.8 528 54.4
Nn2g14420 Nelumbo nucifera HOM05D006232 ORTHO05D007746 2.5e-86 324.3 645 47.3
FvH4_7g18170 Fragaria vesca HOM05D006232 ORTHO05D007746 1.5e-83 315.1 612 48.0
FAN06G0943 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.5e-83 315.1 612 48.0
FAN06G1608 Fragaria x ananassa HOM05D006232 ORTHO05D007746 2.0e-83 314.7 612 47.9
MBI12_g26899_MAGBIO Magnolia biondii HOM05D006232 ORTHO05D007746 7.6e-83 312.8 645 48.1
RcHm_v2.0_Chr1g0361811 Rosa chinensis HOM05D006232 ORTHO05D007746 3.2e-81 307.4 611 47.8
Glyma.11G135300 Glycine max HOM05D006232 ORTHO05D007746 8.7e-79 299.3 609 48.4
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 5.6e-78 296.6 614 47.2
Psat3g203240 Pisum sativum HOM05D006232 ORTHO05D007746 7.4e-78 296.2 649 46.8
Lj1g0009831 Lotus japonicus HOM05D006232 ORTHO05D007746 2.4e-76 291.2 630 47.0
MD01G1097600 Malus domestica HOM05D006232 ORTHO05D007746 5.3e-76 290.0 479 39.0
Medtr7g016910 Medicago truncatula HOM05D006232 ORTHO05D007746 5.3e-76 290.0 657 44.4
Ciclev10023806m.g Citrus clementina HOM05D006232 ORTHO05D007746 9.0e-76 289.3 273 57.1
Eucgr.A00015 Eucalyptus grandis HOM05D006232 ORTHO05D007746 2.6e-75 287.7 631 46.6
Sed0020235 Sechium edule HOM05D006232 ORTHO05D007746 1.3e-74 285.4 618 48.9
SGA_v2.0_scaffold83G26365 Striga asiatica HOM05D006232 ORTHO05D007746 6.4e-74 283.1 501 45.3
MELO3C022296.2 Cucumis melo HOM05D006232 ORTHO05D007746 1.4e-73 282.0 621 45.9
Lsat_1_v5_gn_4_109581 Lactuca sativa HOM05D006232 ORTHO05D007746 1.9e-73 281.6 643 49.3
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 5.1e-71 273.5 548 48.7
TPR.G23396 Trifolium pratense HOM05D006232 ORTHO05D007746 3.3e-70 270.8 660 43.5
FAN10G2235 Fragaria x ananassa HOM05D006232 ORTHO05D007746 5.7e-70 270.0 244 57.0
ATR0684G123 Amborella trichopoda HOM05D006232 ORTHO05D007746 2.4e-68 264.6 633 47.6
Dinv01552 Davidia involucrata HOM05D006232 ORTHO05D007746 4.0e-68 263.8 252 56.7
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 4.5e-67 260.4 643 47.0
FAN01G1185 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.3e-66 258.8 671 41.9
COL.COLO4_23076 Corchorus olitorius HOM05D006232 ORTHO05D007746 6.5e-66 256.5 665 32.6
PGR092G0006 Punica granatum HOM05D006232 ORTHO05D007746 1.8e-63 248.4 617 44.7
arahy.Tifrunner.gnm1.ann1.MJ9C76 Arachis hypogaea HOM05D006232 ORTHO05D007746 3.0e-63 247.7 513 47.8
Zm00001eb055010 Zea mays HOM05D006232 ORTHO05D007746 6.3e-61 240.0 657 41.9
MD01G1095900 Malus domestica HOM05D006232 ORTHO05D007746 1.5e-59 235.3 275 47.6
MD01G1096200 Malus domestica HOM05D006232 ORTHO05D007746 6.5e-58 229.9 496 49.2
GSVIVG01010456001 Vitis vinifera HOM05D006232 ORTHO05D007746 8.5e-58 229.6 190 62.1
TAR371G1107 Trochodendron aralioides HOM05D006232 ORTHO05D007746 4.6e-56 223.8 200 58.0
HanXRQChr09g0270591 Helianthus annuus HOM05D006232 ORTHO05D007746 1.0e-55 222.6 210 53.8
CSS0030017 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 5.1e-55 220.3 202 56.4
Ca_06909_v3 Cicer arietinum L. HOM05D006232 ORTHO05D007746 9.7e-54 216.1 192 58.3
Os03g0712900 Oryza sativa ssp. japonica HOM05D006232 ORTHO05D007746 1.8e-52 211.8 228 46.9
TAR371G0213 Trochodendron aralioides HOM05D006232 ORTHO05D007746 3.8e-50 204.1 267 46.1
HPP92_002273 Vanilla planifolia HOM05D006232 ORTHO05D007746 1.1e-46 192.6 200 48.5
Hund17178 Selenicereus undatus HOM05D006232 ORTHO05D007746 9.7e-46 189.5 239 46.0
CsaV3_6G008430 Cucumis sativus L. HOM05D006232 ORTHO05D007746 6.3e-37 160.2 622 41.8
SEGI_19483 Sequoiadendron giganteum HOM05D006232 ORTHO05D007746 4.7e-32 144.1 226 39.4
unitig_62.g23853 Utricularia gibba HOM05D006232 ORTHO05D007746 1.0e-31 142.9 195 43.1
unitig_64.g29781 Utricularia gibba HOM05D006232 ORTHO05D007746 1.0e-31 142.9 195 43.1
Nn6g33415 Nelumbo nucifera HOM05D006232 ORTHO05D007746 1.2e-30 139.4 162 45.1
Dinv01553 Davidia involucrata HOM05D006232 ORTHO05D007746 2.8e-29 134.8 109 67.0
MD01G1096300 Malus domestica HOM05D006232 ORTHO05D007746 1.5e-25 122.5 109 59.6
Lj1P725T29 Lonicera japonica HOM05D006232 ORTHO05D007746 1.4e-23 115.9 166 37.3
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 1.5e-22 112.5 145 44.8
Hma1.2p1_0074F.1_g038910 Hydrangea macrophylla HOM05D006232 ORTHO05D007746 7.0e-20 103.6 332 50.0
CAN.G691.7 Capsicum annuum HOM05D006232 ORTHO05D007746 7.7e-19 100.1 114 49.1
CAN.G395.52 Capsicum annuum HOM05D006232 ORTHO05D007746 3.6e-16 91.3 158 33.5
Lj1P725T28 Lonicera japonica HOM05D006232 ORTHO05D007746 2.7e-11 75.1 47 76.6
SGA_v2.0_scaffold4055G54421 Striga asiatica HOM05D006232 ORTHO05D007746 2.5e-09 68.6 181 42.5
Sc02g0005770 Simmondsia chinensis HOM05D006232 ORTHO05D007746 5.6e-09 67.4 76 55.3
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 1.2e-08 66.2 43 62.8
Dinv15329 Davidia involucrata HOM05D006232 ORTHO05D007746 2.1e-08 65.5 163 65.6
HanXRQChr11g0349291 Helianthus annuus HOM05D006895 ORTHO05D008605 4.7e-08 64.3 141 31.9
QL02p015096 Quercus lobata HOM05D006218 ORTHO05D007338 8.0e-08 63.5 211 22.7
BcaB03g14655 Brassica carinata HOM05D000424 ORTHO05D000355 1.4e-07 62.8 187 28.9
Sp3g20430 Schrenkiella parvula HOM05D000424 ORTHO05D000355 1.4e-07 62.8 176 29.5
MD01G1131700 Malus domestica HOM05D006232 ORTHO05D007746 1.8e-07 62.4 49 61.2
Thhalv10020419m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 2.3e-07 62.0 178 29.2
Potri.005G247200 Populus trichocarpa HOM05D006218 ORTHO05D007338 2.3e-07 62.0 182 24.2
Sc02g0005780 Simmondsia chinensis HOM05D006232 ORTHO05D007746 3.1e-07 61.6 36 72.2
PGR083G2098 Punica granatum HOM05D000424 ORTHO05D000355 4.0e-07 61.2 233 24.5
Manes.08G078400 Manihot esculenta HOM05D006895 ORTHO05D008605 6.8e-07 60.5 113 32.7
PGR004G1128 Punica granatum HOM05D006895 ORTHO05D008605 6.8e-07 60.5 180 27.8
Sabra05G0191200 Salix brachista HOM05D006218 ORTHO05D007338 6.8e-07 60.5 182 24.2
AL3G36970 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 8.9e-07 60.1 185 28.1
RcHm_v2.0_Chr6g0271861 Rosa chinensis HOM05D006218 ORTHO05D007338 1.5e-06 59.3 160 25.0
TPR.G37490 Trifolium pratense HOM05D002460 ORTHO05D002716 1.5e-06 59.3 268 23.5
Gorai.005G172000 Gossypium raimondii HOM05D000424 ORTHO05D008586 2.0e-06 58.9 182 26.4
SGA_v2.0_scaffold73G24233 Striga asiatica HOM05D000424 ORTHO05D000355 2.0e-06 58.9 274 24.5
EL10Ac8g18760 Beta vulgaris HOM05D006895 ORTHO05D008605 2.6e-06 58.5 172 26.7
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 2.6e-06 58.5 143 31.5
CAN.G395.53 Capsicum annuum HOM05D006232 ORTHO05D007746 3.4e-06 58.2 40 72.5
Nitab4.5_0001793g0050 Nicotiana tabacum HOM05D002460 ORTHO05D002716 3.4e-06 58.2 261 24.5
Oeu049215.1 Olea europaea HOM05D006895 ORTHO05D008605 3.4e-06 58.2 185 25.9
SGA_v2.0_scaffold126G33815 Striga asiatica HOM05D006895 ORTHO05D008605 3.4e-06 58.2 167 31.7
A03p42910 Brassica napus HOM05D000424 ORTHO05D000355 4.4e-06 57.8 180 28.3
BraA03t13435Z Brassica rapa HOM05D000424 ORTHO05D000355 4.4e-06 57.8 180 28.3
DCAR_009247 Daucus carota HOM05D006895 ORTHO05D008605 4.4e-06 57.8 118 31.4
Lj4g0001346 Lotus japonicus HOM05D002460 ORTHO05D002716 4.4e-06 57.8 262 24.4
C03p52660 Brassica napus HOM05D000424 ORTHO05D000355 5.8e-06 57.4 175 28.6
Lsat_1_v5_gn_1_55640 Lactuca sativa HOM05D006895 ORTHO05D008605 5.8e-06 57.4 153 28.8
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 5.8e-06 57.4 84 34.5
Carub.0003s2283 Capsella rubella HOM05D000424 ORTHO05D000355 7.5e-06 57.0 185 25.9
DCAR_025928 Daucus carota HOM05D000891 ORTHO05D000761 7.5e-06 57.0 92 30.4
SalBow6G2955 Salvia bowleyana HOM05D000424 ORTHO05D000355 7.5e-06 57.0 152 27.6
Sc01g0004190 Simmondsia chinensis HOM05D006895 ORTHO05D008605 7.5e-06 57.0 171 25.7
Sopen03g031280 Solanum pennellii HOM05D002460 ORTHO05D002716 7.5e-06 57.0 288 23.3
BcaC01g03431 Brassica carinata HOM05D000424 ORTHO05D000355 9.8e-06 56.6 175 28.0
BolC3t17534H Brassica oleracea HOM05D000424 ORTHO05D000355 9.8e-06 56.6 175 28.0
Gohir.D02G152900 Gossypium hirsutum HOM05D000424 ORTHO05D008586 9.8e-06 56.6 182 25.8
Solyc03g112190.4 Solanum lycopersicum HOM05D002460 ORTHO05D002716 9.8e-06 56.6 288 23.6
SGA_v2.0_scaffold25G10796 Striga asiatica HOM05D002460 ORTHO05D002716 9.8e-06 56.6 252 23.4


User provided reference genes

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