Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 1.3e-168 596.3 301 100.0
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 4.3e-167 591.3 298 100.0
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 3.9e-144 515.0 301 89.7
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 1.5e-143 513.1 300 89.3
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 1.8e-120 436.4 303 78.5
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 1.8e-117 426.4 303 80.2
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 5.5e-114 414.8 301 77.4
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 1.8e-112 409.8 303 78.2
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 5.1e-112 408.3 276 79.7
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 1.5e-111 406.8 213 98.6
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 2.9e-107 392.5 309 73.5
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 5.7e-103 378.3 308 70.1
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 2.2e-102 376.3 298 75.2
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 3.4e-100 369.0 304 70.7
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 7.7e-100 367.9 307 69.1
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 1.6e-92 343.6 263 74.1
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 2.6e-92 342.8 304 64.1
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 1.7e-91 340.1 300 67.3
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 5.7e-87 325.1 300 65.7
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 5.9e-84 315.1 288 59.0
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 1.0e-83 314.3 211 75.8
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 1.3e-83 313.9 215 77.7
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 2.2e-83 313.2 198 76.8
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 2.2e-83 313.2 198 76.8
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 2.2e-83 313.2 241 65.1
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 1.9e-82 310.1 208 74.0
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 2.5e-82 309.7 226 66.8
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 4.2e-82 308.9 187 78.6
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 9.4e-82 307.8 211 73.9
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.2e-81 307.4 208 74.5
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 2.7e-81 306.2 284 58.1
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 2.7e-81 306.2 211 72.5
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 8.0e-81 304.7 211 71.1
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 8.0e-81 304.7 211 72.0
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 8.0e-81 304.7 266 60.9
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 1.8e-80 303.5 211 69.7
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.8e-80 303.5 186 78.0
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 3.0e-80 302.8 211 70.6
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 5.2e-80 302.0 267 59.9
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 6.8e-80 301.6 197 75.6
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 6.8e-80 301.6 208 70.2
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 8.8e-80 301.2 273 59.0
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 1.2e-79 300.8 296 55.7
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 1.5e-79 300.4 289 57.1
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 4.4e-79 298.9 210 72.4
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 4.4e-79 298.9 188 74.5
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 5.7e-79 298.5 195 74.4
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 9.8e-79 297.7 220 69.1
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 9.8e-79 297.7 187 76.5
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 2.2e-78 296.6 210 72.4
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 2.2e-78 296.6 187 78.6
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 2.2e-78 296.6 192 74.5
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 2.2e-78 296.6 188 77.7
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 3.7e-78 295.8 262 58.8
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 3.7e-78 295.8 189 75.7
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 3.7e-78 295.8 210 70.0
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 8.3e-78 294.7 224 66.1
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 1.1e-77 294.3 202 70.3
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 1.8e-77 293.5 185 74.6
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 3.1e-77 292.7 187 74.3
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 3.1e-77 292.7 190 74.2
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 3.1e-77 292.7 190 74.2
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 3.1e-77 292.7 190 74.2
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 4.1e-77 292.4 187 74.9
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 5.4e-77 292.0 188 73.4
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 5.4e-77 292.0 188 74.5
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 1.2e-76 290.8 191 77.0
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 2.0e-76 290.0 186 73.1
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 2.0e-76 290.0 189 76.2
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 1.0e-75 287.7 191 76.4
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 1.7e-75 287.0 187 75.4
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 1.7e-75 287.0 188 72.3
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 2.9e-75 286.2 186 73.7
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 3.8e-75 285.8 311 50.2
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 3.8e-75 285.8 181 73.5
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 8.6e-75 284.6 190 72.1
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 8.6e-75 284.6 186 74.2
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 1.9e-74 283.5 195 73.8
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 2.5e-74 283.1 188 75.0
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 4.2e-74 282.3 185 73.0
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 4.2e-74 282.3 204 69.1
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 5.5e-74 282.0 190 74.2
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 9.5e-74 281.2 187 72.7
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 1.2e-73 280.8 215 66.0
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 3.6e-73 279.3 195 68.2
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 4.7e-73 278.9 212 66.5
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 8.0e-73 278.1 187 70.1
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 8.0e-73 278.1 190 71.6
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.0e-72 277.7 203 68.0
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.4e-72 277.3 195 67.7
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 2.3e-72 276.6 203 66.5
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 3.0e-72 276.2 186 74.2
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 3.0e-72 276.2 187 71.1
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 5.2e-72 275.4 191 72.8
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 6.8e-72 275.0 186 73.1
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 6.8e-72 275.0 186 73.1
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 6.8e-72 275.0 191 74.9
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 8.9e-72 274.6 220 63.6
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 9.8e-71 271.2 186 68.8
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 1.7e-70 270.4 174 75.3
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 6.3e-70 268.5 191 70.2
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 1.4e-69 267.3 217 61.8
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 3.1e-69 266.2 199 68.8
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.2e-68 264.2 226 61.1
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 2.0e-68 263.5 186 68.3
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.0e-68 263.5 186 68.3
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.0e-68 263.5 186 68.3
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.0e-68 263.5 186 68.3
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 1.1e-66 257.7 204 63.7
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 1.1e-66 257.7 240 57.9
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 2.5e-66 256.5 185 64.3
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.3e-64 250.0 210 60.5
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 4.4e-63 245.7 160 71.9
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 9.8e-63 244.6 173 67.6
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 3.7e-62 242.7 244 55.3
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 2.0e-60 236.9 187 65.8
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 4.6e-60 235.7 183 63.4
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 1.5e-55 220.7 177 60.5
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 8.3e-54 214.9 136 72.8
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 4.1e-53 212.6 133 78.2
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 1.2e-52 211.1 139 74.1
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 8.6e-51 204.9 182 58.2
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 4.0e-48 196.1 137 70.1
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.2e-45 186.4 109 78.0
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 3.0e-43 179.9 118 72.0
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 1.1e-37 161.4 93 81.7
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 8.1e-33 145.2 187 45.5
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 3.1e-32 143.3 102 66.7
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.0e-27 126.7 181 44.8
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 3.9e-27 126.3 111 58.6
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 1.1e-26 124.8 133 47.4
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 1.6e-25 120.9 135 45.2
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 2.8e-25 120.2 167 38.9
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.3e-22 111.3 94 58.5
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.3e-22 111.3 94 58.5
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 1.3e-22 111.3 78 69.2
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 1.9e-18 97.4 79 62.0
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 4.2e-13 79.7 84 53.6
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.9e-11 73.2 124 41.9
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 5.6e-10 69.3 41 75.6
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 9.0e-08 62.0 38 76.3
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 1.2e-07 61.6 56 64.3


User provided reference genes

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