Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p54100 Brassica napus HOM05D008883 ORTHO05D011075 1.1e-121 439.9 215 100.0
BolC8t52918H Brassica oleracea HOM05D008883 ORTHO05D011075 1.1e-121 439.9 215 100.0
BcaC05g29665 Brassica carinata HOM05D008883 ORTHO05D011075 4.3e-121 438.0 215 99.5
BcaB08g35019 Brassica carinata HOM05D008883 ORTHO05D011075 2.9e-93 345.5 213 76.1
BcaB06g27532 Brassica carinata HOM05D008883 ORTHO05D011075 3.1e-79 298.9 191 75.4
A09p69280 Brassica napus HOM05D008883 ORTHO05D011075 2.5e-68 262.7 132 100.0
SpUn0486_0010 Schrenkiella parvula HOM05D008883 ORTHO05D011075 2.3e-66 256.1 214 57.5
Sp5g18780 Schrenkiella parvula HOM05D008883 ORTHO05D011075 6.4e-56 221.5 177 59.3
SpUn1299_0010 Schrenkiella parvula HOM05D008883 ORTHO05D011075 6.4e-56 221.5 178 58.4
BcaC04g20437 Brassica carinata HOM05D008883 ORTHO05D011075 1.1e-55 220.7 111 99.1
SpUn0003_0120 Schrenkiella parvula HOM05D008883 ORTHO05D011075 1.1e-55 220.7 183 60.7
SpUn1191_0010 Schrenkiella parvula HOM05D008883 ORTHO05D011075 7.0e-55 218.0 177 57.1
BcaC04g20436 Brassica carinata HOM05D008883 ORTHO05D011075 3.7e-48 195.7 204 47.5
A09p69290 Brassica napus HOM05D008883 ORTHO05D011075 5.8e-41 171.8 204 44.1
BolC8t52919H Brassica oleracea HOM05D008883 ORTHO05D011075 5.8e-41 171.8 204 44.1
Sp3g24800 Schrenkiella parvula HOM05D008883 ORTHO05D011075 1.9e-39 166.8 187 47.6
BcaC04g20434 Brassica carinata HOM05D008883 ORTHO05D011075 5.4e-39 165.2 204 42.6
CARHR158160 Cardamine hirsuta HOM05D008883 ORTHO05D011075 5.4e-39 165.2 172 47.7
Sp5g18640 Schrenkiella parvula HOM05D008883 ORTHO05D011075 5.4e-39 165.2 195 45.6
CARHR108020 Cardamine hirsuta HOM05D008883 ORTHO05D011075 2.1e-38 163.3 159 50.9
A09p69320 Brassica napus HOM05D008883 ORTHO05D011075 2.7e-38 162.9 204 42.2
BolC8t52922H Brassica oleracea HOM05D008883 ORTHO05D011075 2.7e-38 162.9 204 42.2
Sp7g07010 Schrenkiella parvula HOM05D008883 ORTHO05D011075 1.5e-33 147.1 211 38.9
SpUn0002_0140 Schrenkiella parvula HOM05D008883 ORTHO05D011075 4.1e-31 139.0 104 59.6
Sp7g05080 Schrenkiella parvula HOM05D008883 ORTHO05D011075 6.2e-27 125.2 147 46.3
C08p54140 Brassica napus HOM05D008883 ORTHO05D011075 2.0e-25 120.2 146 41.1
BcaC05g29663 Brassica carinata HOM05D008883 ORTHO05D011075 5.8e-25 118.6 191 37.7
SpUn0011_0050 Schrenkiella parvula HOM05D008883 ORTHO05D011075 9.9e-25 117.9 139 44.6
SpUn0052_0010 Schrenkiella parvula HOM05D008883 ORTHO05D011075 9.9e-25 117.9 139 44.6
SpUn0057_0050 Schrenkiella parvula HOM05D008883 ORTHO05D011075 9.9e-25 117.9 139 44.6
SpUn0001_0500 Schrenkiella parvula HOM05D008883 ORTHO05D011075 7.8e-22 108.2 188 38.8
Sp1g33150 Schrenkiella parvula HOM05D008883 ORTHO05D011075 3.3e-20 102.8 135 39.3
BcaC05g29664 Brassica carinata HOM05D008883 ORTHO05D011075 1.3e-19 100.9 87 50.6
BcaB08g35020 Brassica carinata HOM05D008883 ORTHO05D011075 6.9e-18 95.1 109 41.3
Sp7g05660 Schrenkiella parvula HOM05D008883 ORTHO05D011075 1.1e-15 87.8 147 38.1
Sp6g12610 Schrenkiella parvula HOM05D008883 ORTHO05D011075 2.4e-15 86.7 147 35.4
SpUn0015_0030 Schrenkiella parvula HOM05D008883 ORTHO05D011075 2.4e-15 86.7 147 35.4
SpUn0039_0060 Schrenkiella parvula HOM05D008883 ORTHO05D011075 2.4e-15 86.7 147 35.4
CiPaw.06G099700 Carya illinoinensis HOM05D002915 ORTHO05D003004 1.2e-14 84.3 222 27.5
BraA07t28801Z Brassica rapa HOM05D003839 ORTHO05D003352 2.3e-13 80.1 202 25.2
A09p20270 Brassica napus HOM05D003839 ORTHO05D003352 6.7e-13 78.6 202 24.3
C09p33270 Brassica napus HOM05D008292 ORTHO05D003352 6.7e-13 78.6 189 28.0
BolC9t56163H Brassica oleracea HOM05D008292 ORTHO05D003352 6.7e-13 78.6 189 28.0
Thhalv10005434m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 1.1e-12 77.8 211 25.1
BcaB04g16904 Brassica carinata HOM05D008292 ORTHO05D003352 1.5e-12 77.4 196 28.1
C09p21410 Brassica napus HOM05D003839 ORTHO05D003352 2.5e-12 76.6 198 24.2
A01p17040 Brassica napus HOM05D008292 ORTHO05D003352 3.3e-12 76.3 199 29.1
BraA09t39508Z Brassica rapa HOM05D008292 ORTHO05D003352 3.3e-12 76.3 199 29.1
BraA08t34531Z Brassica rapa HOM05D008292 ORTHO05D003352 4.3e-12 75.9 152 29.6
Thhalv10005441m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 1.6e-11 73.9 205 25.4
Thhalv10002164m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 2.1e-11 73.6 201 24.9
A06p31440 Brassica napus HOM05D008292 ORTHO05D003352 2.8e-11 73.2 211 25.1
Thhalv10002269m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 2.8e-11 73.2 144 29.9
BolC2t12326H Brassica oleracea HOM05D008292 ORTHO05D003352 3.6e-11 72.8 152 28.9
BcaC01g02162 Brassica carinata HOM05D003839 ORTHO05D003352 6.2e-11 72.0 163 23.9
Thhalv10002917m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 6.2e-11 72.0 143 33.6
BcaC03g17703 Brassica carinata HOM05D008292 ORTHO05D003352 8.1e-11 71.6 152 28.3
BolC2t11778H Brassica oleracea HOM05D008292 ORTHO05D003352 8.1e-11 71.6 152 28.3
AL8G28420 Arabidopsis lyrata HOM05D003839 ORTHO05D003352 1.4e-10 70.9 203 24.6
Atru.chr1.711 Acer truncatum HOM05D002915 ORTHO05D003004 1.8e-10 70.5 164 32.3
C03p32250 Brassica napus HOM05D008292 ORTHO05D003352 1.8e-10 70.5 192 25.5
CiPaw.05G115300 Carya illinoinensis HOM05D002915 ORTHO05D003004 1.8e-10 70.5 222 25.2
CiPaw.05G115400 Carya illinoinensis HOM05D002915 ORTHO05D003004 1.8e-10 70.5 222 25.2
A09p40840 Brassica napus HOM05D008292 ORTHO05D003352 2.4e-10 70.1 204 25.0
C07p08430 Brassica napus HOM05D008292 ORTHO05D003352 2.4e-10 70.1 192 25.5
AT2G35280 Arabidopsis thaliana HOM05D008292 ORTHO05D003352 3.1e-10 69.7 139 31.7
BcaNung06308 Brassica carinata HOM05D008292 ORTHO05D003352 3.1e-10 69.7 188 25.5
CARHR101890 Cardamine hirsuta HOM05D008292 ORTHO05D003352 4.0e-10 69.3 139 31.7
BcaB01g00999 Brassica carinata HOM05D008292 ORTHO05D003352 5.3e-10 68.9 176 27.3
BraA09t40513Z Brassica rapa HOM05D003839 ORTHO05D003352 5.3e-10 68.9 157 24.2
BcaC04g22280 Brassica carinata HOM05D003839 ORTHO05D003352 6.9e-10 68.6 211 24.2
CiPaw.05G115500 Carya illinoinensis HOM05D002915 ORTHO05D003004 6.9e-10 68.6 164 26.8
Atru.chr1.712 Acer truncatum HOM05D002915 ORTHO05D003004 9.0e-10 68.2 164 31.7
C06p50270 Brassica napus HOM05D003839 ORTHO05D003352 9.0e-10 68.2 204 22.5
Atru.chr11.2244 Acer truncatum HOM05D002915 ORTHO05D003004 1.2e-09 67.8 166 31.9
Atru.chr11.2259 Acer truncatum HOM05D002915 ORTHO05D003004 1.2e-09 67.8 166 31.9
C04p33340 Brassica napus HOM05D003839 ORTHO05D003352 1.2e-09 67.8 204 22.5
Manes.12G023850 Manihot esculenta HOM05D002915 ORTHO05D003004 1.5e-09 67.4 163 28.2
TAR629G0865 Trochodendron aralioides HOM05D002915 ORTHO05D003004 1.5e-09 67.4 172 25.6
A09p19700 Brassica napus HOM05D003839 ORTHO05D003352 2.0e-09 67.0 179 24.6
BcaB08g35221 Brassica carinata HOM05D003839 ORTHO05D003352 3.4e-09 66.2 210 19.5
BcaC03g15389 Brassica carinata HOM05D003839 ORTHO05D003352 3.4e-09 66.2 148 25.0
BcaC06g36055 Brassica carinata HOM05D008292 ORTHO05D003352 3.4e-09 66.2 188 25.5
Manes.12G014800 Manihot esculenta HOM05D002915 ORTHO05D003004 3.4e-09 66.2 163 28.2
C04p41030 Brassica napus HOM05D003839 ORTHO05D003352 4.5e-09 65.9 173 25.4
BolC4t25686H Brassica oleracea HOM05D003839 ORTHO05D003352 4.5e-09 65.9 173 25.4
Prupe.1G137300 Prunus persica HOM05D002915 ORTHO05D003004 5.8e-09 65.5 208 26.4
BcaB08g35818 Brassica carinata HOM05D003839 ORTHO05D003352 7.6e-09 65.1 159 23.9
BcaC03g16634 Brassica carinata HOM05D003839 ORTHO05D003352 7.6e-09 65.1 148 25.0
BolC7t43565H Brassica oleracea HOM05D003839 ORTHO05D003352 9.9e-09 64.7 148 25.0
Manes.13G015600 Manihot esculenta HOM05D002915 ORTHO05D003004 9.9e-09 64.7 163 28.8
BraA01t02749Z Brassica rapa HOM05D003839 ORTHO05D003352 1.3e-08 64.3 160 24.4
Medtr4g119850 Medicago truncatula HOM05D002915 ORTHO05D003004 1.3e-08 64.3 127 33.9
BraA02t07279Z Brassica rapa HOM05D003839 ORTHO05D003352 1.7e-08 63.9 135 25.9
Hma1.2p1_0167F.1_g073810 Hydrangea macrophylla HOM05D002915 ORTHO05D003004 1.7e-08 63.9 172 26.7
Psat0s1573g0120 Pisum sativum HOM05D002915 ORTHO05D003004 1.7e-08 63.9 179 29.6
BcaB05g23505 Brassica carinata HOM05D003839 ORTHO05D003352 2.2e-08 63.5 159 24.5
Dinv14798 Davidia involucrata HOM05D002915 ORTHO05D003004 2.9e-08 63.2 140 28.6
Lsat_1_v5_gn_8_150181 Lactuca sativa HOM05D000825 ORTHO05D003684 2.9e-08 63.2 148 28.4
Psat4g025920 Pisum sativum HOM05D002915 ORTHO05D003004 2.9e-08 63.2 177 28.2
A03p67960 Brassica napus HOM05D003839 ORTHO05D003352 3.8e-08 62.8 206 22.8
TPR.G23884 Trifolium pratense HOM05D002915 ORTHO05D003004 3.8e-08 62.8 232 26.7
TAR629G0058 Trochodendron aralioides HOM05D002915 ORTHO05D003004 4.9e-08 62.4 215 23.3
Manes.11G084185 Manihot esculenta HOM05D002915 ORTHO05D003004 6.4e-08 62.0 162 25.3
AT5G17167 Arabidopsis thaliana HOM05D003839 ORTHO05D003352 8.4e-08 61.6 159 25.2
BcaB07g32710 Brassica carinata HOM05D003839 ORTHO05D003352 8.4e-08 61.6 159 24.5
BcaC03g15793 Brassica carinata HOM05D008292 ORTHO05D003352 8.4e-08 61.6 145 26.2
THA.LOC104810144 Tarenaya hassleriana HOM05D002915 ORTHO05D003004 8.4e-08 61.6 145 30.3
TPR.G3196 Trifolium pratense HOM05D002915 ORTHO05D003004 8.4e-08 61.6 220 26.4
BolC6t38134H Brassica oleracea HOM05D003839 ORTHO05D003352 1.1e-07 61.2 161 24.8
BcaB07g31374 Brassica carinata HOM05D003839 ORTHO05D003352 1.9e-07 60.5 173 22.5
A05p32880 Brassica napus HOM05D008292 ORTHO05D003352 1.9e-07 60.5 149 26.2
BraA05t22695Z Brassica rapa HOM05D008292 ORTHO05D003352 1.9e-07 60.5 149 26.2
Haze_24934 Corylus avellana HOM05D002915 ORTHO05D003004 1.9e-07 60.5 126 30.2
Sabra13G0007400 Salix brachista HOM05D002915 ORTHO05D003004 1.9e-07 60.5 134 29.1
Potri.013G008800 Populus trichocarpa HOM05D002915 ORTHO05D003004 2.4e-07 60.1 154 26.0
QL03p054762 Quercus lobata HOM05D002915 ORTHO05D003004 2.4e-07 60.1 163 29.4
A01p36380 Brassica napus HOM05D003839 ORTHO05D003352 3.2e-07 59.7 212 21.7
BolC9t55033H Brassica oleracea HOM05D003839 ORTHO05D003352 3.2e-07 59.7 151 27.8
BolC9t55562H Brassica oleracea HOM05D009411 ORTHO05D014997 5.5e-07 58.9 131 27.5
C07p34600 Brassica napus HOM05D009411 ORTHO05D014997 7.1e-07 58.5 130 27.7
C09p26700 Brassica napus HOM05D009411 ORTHO05D014997 7.1e-07 58.5 130 27.7
BolC3t15567H Brassica oleracea HOM05D008292 ORTHO05D003352 7.1e-07 58.5 143 25.9
BolC7t43992H Brassica oleracea HOM05D009411 ORTHO05D014997 7.1e-07 58.5 130 27.7
Thhalv10003388m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 7.1e-07 58.5 89 32.6
C06p24070 Brassica napus HOM05D018430 ORTHO05D020143 9.3e-07 58.2 106 28.3
Potri.001G321400 Populus trichocarpa HOM05D002915 ORTHO05D003004 9.3e-07 58.2 165 26.1
BcaC04g21847 Brassica carinata HOM05D009411 ORTHO05D014997 1.2e-06 57.8 130 27.7
BcaC07g37399 Brassica carinata HOM05D008292 ORTHO05D003352 1.2e-06 57.8 135 27.4
BcaC09g47930 Brassica carinata HOM05D008292 ORTHO05D003352 1.2e-06 57.8 176 26.7
BolC4t27064H Brassica oleracea HOM05D008292 ORTHO05D003352 1.2e-06 57.8 149 26.2
Cfa002665 Carpinus fangiana HOM05D002915 ORTHO05D003004 1.2e-06 57.8 161 28.6
Lj4g0001673 Lotus japonicus HOM05D002915 ORTHO05D003004 1.2e-06 57.8 135 31.9
BcaB01g02875 Brassica carinata HOM05D003839 ORTHO05D003352 1.6e-06 57.4 158 24.7
BcaB02g06630 Brassica carinata HOM05D003839 ORTHO05D003352 1.6e-06 57.4 213 23.9
C05p17950 Brassica napus HOM05D003839 ORTHO05D003352 1.6e-06 57.4 153 27.5
C08p54110 Brassica napus HOM05D008883 ORTHO05D011075 1.6e-06 57.4 101 35.6
TAR629G2135 Trochodendron aralioides HOM05D002915 ORTHO05D003004 1.6e-06 57.4 148 27.0
BcaB04g18348 Brassica carinata HOM05D003839 ORTHO05D003352 2.1e-06 57.0 160 21.2
BcaC03g15888 Brassica carinata HOM05D008292 ORTHO05D003352 2.1e-06 57.0 128 28.9
ClCG11G013100 Citrullus lanatus HOM05D002915 ORTHO05D003004 2.1e-06 57.0 163 25.2
Lj4g0008862 Lotus japonicus HOM05D002915 ORTHO05D003004 2.1e-06 57.0 119 32.8
C03p19740 Brassica napus HOM05D008292 ORTHO05D003352 2.7e-06 56.6 147 26.5
Actinidia25760 Actinidia chinensis HOM05D002915 ORTHO05D003004 4.6e-06 55.8 168 27.4
Thhalv10027513m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 4.6e-06 55.8 126 30.2
Lj4g0002182 Lotus japonicus HOM05D002915 ORTHO05D003004 4.6e-06 55.8 147 31.3
ECA233G1149 Erigeron canadensis HOM05D000825 ORTHO05D003004 7.9e-06 55.1 156 26.9


User provided reference genes

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